data_4B09 # _model_server_result.job_id A9vvIdiyyUq-ZeU38bPigA _model_server_result.datetime_utc '2024-11-22 18:15:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4b09 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":1241}' # _entry.id 4B09 # _exptl.entry_id 4B09 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 2044.535 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEXATANTALUM DODECABROMIDE' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.4 _cell.angle_gamma 90 _cell.entry_id 4B09 _cell.length_a 236.602 _cell.length_b 130.401 _cell.length_c 198.213 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4B09 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA dimeric 2 author_and_software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,M,N 1 1 C,D,O,P 2 1 E,F,Q,R 3 1 G,H,S 4 1 I,J,T 5 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 72 A LEU 72 1_555 A N CAS 73 A CAS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C CAS 73 A CAS 73 1_555 A N ARG 74 A ARG 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C ILE 108 A ILE 108 1_555 A N CAS 109 A CAS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C CAS 109 A CAS 109 1_555 A N LYS 110 A LYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 B C LEU 72 B LEU 72 1_555 B N CAS 73 B CAS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 B C CAS 73 B CAS 73 1_555 B N ARG 74 B ARG 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 B C ILE 108 B ILE 108 1_555 B N CAS 109 B CAS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 B C CAS 109 B CAS 109 1_555 B N LYS 110 B LYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 C C LEU 72 C LEU 72 1_555 C N CAS 73 C CAS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 C C CAS 73 C CAS 73 1_555 C N ARG 74 C ARG 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 C C ILE 108 C ILE 108 1_555 C N CAS 109 C CAS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 C C CAS 109 C CAS 109 1_555 C N LYS 110 C LYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 D C LEU 72 D LEU 72 1_555 D N CAS 73 D CAS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 D C CAS 73 D CAS 73 1_555 D N ARG 74 D ARG 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale15 D C ILE 108 D ILE 108 1_555 D N CAS 109 D CAS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 D C CAS 109 D CAS 109 1_555 D N LYS 110 D LYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale17 E C LEU 72 E LEU 72 1_555 E N CAS 73 E CAS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale18 E C CAS 73 E CAS 73 1_555 E N ARG 74 E ARG 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale19 E C ILE 108 E ILE 108 1_555 E N CAS 109 E CAS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale20 E C CAS 109 E CAS 109 1_555 E N LYS 110 E LYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale21 F C LEU 72 F LEU 72 1_555 F N CAS 73 F CAS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale22 F C CAS 73 F CAS 73 1_555 F N ARG 74 F ARG 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale23 F C ILE 108 F ILE 108 1_555 F N CAS 109 F CAS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale24 F C CAS 109 F CAS 109 1_555 F N LYS 110 F LYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale25 G C LEU 72 G LEU 72 1_555 G N CAS 73 G CAS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale26 G C CAS 73 G CAS 73 1_555 G N ARG 74 G ARG 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale27 G C ILE 108 G ILE 108 1_555 G N CAS 109 G CAS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale28 G C CAS 109 G CAS 109 1_555 G N LYS 110 G LYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale29 H C LEU 72 H LEU 72 1_555 H N CAS 73 H CAS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale30 H C CAS 73 H CAS 73 1_555 H N ARG 74 H ARG 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale31 H C ILE 108 H ILE 108 1_555 H N CAS 109 H CAS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale32 H C CAS 109 H CAS 109 1_555 H N LYS 110 H LYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale33 I C LEU 72 I LEU 72 1_555 I N CAS 73 I CAS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale34 I C CAS 73 I CAS 73 1_555 I N ARG 74 I ARG 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale35 I C ILE 108 I ILE 108 1_555 I N CAS 109 I CAS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale36 I C CAS 109 I CAS 109 1_555 I N LYS 110 I LYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale37 J C LEU 72 J LEU 72 1_555 J N CAS 73 J CAS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale38 J C CAS 73 J CAS 73 1_555 J N ARG 74 J ARG 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale39 J C ILE 108 J ILE 108 1_555 J N CAS 109 J CAS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale40 J C CAS 109 J CAS 109 1_555 J N LYS 110 J LYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale41 K C LEU 72 K LEU 72 1_555 K N CAS 73 K CAS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale42 K C CAS 73 K CAS 73 1_555 K N ARG 74 K ARG 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale43 K C ILE 108 K ILE 108 1_555 K N CAS 109 K CAS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale44 K C CAS 109 K CAS 109 1_555 K N LYS 110 K LYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale45 L C LEU 72 L LEU 72 1_555 L N CAS 73 L CAS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale46 L C CAS 73 L CAS 73 1_555 L N ARG 74 L ARG 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale47 L C ILE 108 L ILE 108 1_555 L N CAS 109 L CAS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale48 L C CAS 109 L CAS 109 1_555 L N LYS 110 L LYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'Br12 Ta6' _chem_comp.formula_weight 2044.535 _chem_comp.id TBR _chem_comp.mon_nstd_flag . _chem_comp.name 'HEXATANTALUM DODECABROMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DODECABROMOHEXATANTALUM # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag TA1 TA2 TBR sing 309 n n TA1 TA3 TBR sing 310 n n TA1 TA5 TBR sing 311 n n TA1 TA6 TBR sing 312 n n TA1 BR1 TBR sing 313 n n TA1 BR2 TBR sing 314 n n TA1 BR3 TBR sing 315 n n TA1 BR4 TBR sing 316 n n TA2 TA3 TBR sing 317 n n TA2 TA4 TBR sing 318 n n TA2 TA6 TBR sing 319 n n TA2 BR1 TBR sing 320 n n TA2 BR5 TBR sing 321 n n TA2 BR9 TBR sing 322 n n TA2 BRC TBR sing 323 n n TA3 TA4 TBR sing 324 n n TA3 TA5 TBR sing 325 n n TA3 BR2 TBR sing 326 n n TA3 BR5 TBR sing 327 n n TA3 BRA TBR sing 328 n n TA3 BR6 TBR sing 329 n n TA4 TA5 TBR sing 330 n n TA4 TA6 TBR sing 331 n n TA4 BR7 TBR sing 332 n n TA4 BR8 TBR sing 333 n n TA4 BR9 TBR sing 334 n n TA4 BRA TBR sing 335 n n TA5 TA6 TBR sing 336 n n TA5 BR3 TBR sing 337 n n TA5 BR6 TBR sing 338 n n TA5 BR7 TBR sing 339 n n TA5 BRB TBR sing 340 n n TA6 BR4 TBR sing 341 n n TA6 BR8 TBR sing 342 n n TA6 BRB TBR sing 343 n n TA6 BRC TBR sing 344 n n # _atom_sites.entry_id 4B09 _atom_sites.fract_transf_matrix[1][1] 0.004227 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00003 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007669 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 TBR A 1 1241 1241 TBR TBR . N 2 TBR B 1 1241 1241 TBR TBR . O 2 TBR C 1 1241 1241 TBR TBR . P 2 TBR D 1 1241 1241 TBR TBR . Q 2 TBR E 1 1241 1241 TBR TBR . R 2 TBR F 1 1241 1241 TBR TBR . S 2 TBR G 1 1241 1241 TBR TBR . T 2 TBR I 1 1241 1241 TBR TBR . U 2 TBR K 1 1241 1241 TBR TBR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 TA TA1 TBR . . . U 2 -49.533 -7.743 49.922 0.5 210.96 ? TA1 TBR 1241 K 1 HETATM 2 TA TA2 TBR . . . U 2 -50.063 -10.312 48.641 0.5 191.81 ? TA2 TBR 1241 K 1 HETATM 3 TA TA3 TBR . . . U 2 -47.311 -9.481 49.144 0.5 224.05 ? TA3 TBR 1241 K 1 HETATM 4 TA TA4 TBR . . . U 2 -48.522 -11.664 50.731 0.5 211.27 ? TA4 TBR 1241 K 1 HETATM 5 TA TA5 TBR . . . U 2 -47.961 -9.089 51.98 0.5 212.49 ? TA5 TBR 1241 K 1 HETATM 6 TA TA6 TBR . . . U 2 -50.728 -9.905 51.488 0.5 204.48 ? TA6 TBR 1241 K 1 HETATM 7 BR BR1 TBR . . . U 2 -50.943 -8.034 47.741 0.5 160.98 ? BR1 TBR 1241 K 1 HETATM 8 BR BR2 TBR . . . U 2 -47.578 -6.986 48.369 0.5 168.92 ? BR2 TBR 1241 K 1 HETATM 9 BR BR3 TBR . . . U 2 -48.369 -6.524 51.887 0.5 186.01 ? BR3 TBR 1241 K 1 HETATM 10 BR BR4 TBR . . . U 2 -51.758 -7.526 51.273 0.5 214.67 ? BR4 TBR 1241 K 1 HETATM 11 BR BR5 TBR . . . U 2 -48.237 -10.2 46.802 0.5 140.51 ? BR5 TBR 1241 K 1 HETATM 12 BR BR6 TBR . . . U 2 -45.649 -8.602 50.943 0.5 192.93 ? BR6 TBR 1241 K 1 HETATM 13 BR BR7 TBR . . . U 2 -46.991 -11.358 52.823 0.5 199.37 ? BR7 TBR 1241 K 1 HETATM 14 BR BR8 TBR . . . U 2 -50.47 -12.392 52.299 0.5 185.22 ? BR8 TBR 1241 K 1 HETATM 15 BR BR9 TBR . . . U 2 -49.767 -12.894 48.813 0.5 180.8 ? BR9 TBR 1241 K 1 HETATM 16 BR BRA TBR . . . U 2 -46.677 -11.862 48.907 0.5 184.54 ? BRA TBR 1241 K 1 HETATM 17 BR BRB TBR . . . U 2 -49.789 -9.184 53.824 0.5 197.52 ? BRB TBR 1241 K 1 HETATM 18 BR BRC TBR . . . U 2 -52.4 -10.732 49.666 0.5 173.06 ? BRC TBR 1241 K 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #