data_4B0S # _model_server_result.job_id 7KQRoGLWYA1E1R4b0zcWsw _model_server_result.datetime_utc '2025-04-05 15:12:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4b0s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 4B0S # _exptl.entry_id 4B0S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4B0S _cell.length_a 65.36 _cell.length_b 70.41 _cell.length_c 93.52 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4B0S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 8 A GLU 8 1_555 C MG MG . A MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc2 A OE2 GLU 8 A GLU 8 1_555 C MG MG . A MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc3 A OE1 GLU 8 A GLU 8 1_555 D MG MG . A MG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc4 A OH TYR 92 A TYR 92 1_555 D MG MG . A MG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc5 A OE1 GLU 99 A GLU 99 1_555 D MG MG . A MG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc6 A OE2 GLU 99 A GLU 99 1_555 D MG MG . A MG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc7 B O2G ATP . A ATP 1501 1_555 C MG MG . A MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc8 B O2G ATP . A ATP 1501 1_555 D MG MG . A MG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? metalc ? metalc9 B O2A ATP . A ATP 1501 1_555 D MG MG . A MG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc10 B O3A ATP . A ATP 1501 1_555 D MG MG . A MG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc11 D MG MG . A MG 1503 1_555 E O HOH . A HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4B0S _atom_sites.fract_transf_matrix[1][1] 0.0153 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014203 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010693 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1501 1501 ATP ATP . C 3 MG A 1 1502 1502 MG MG . D 3 MG A 1 1503 1503 MG MG . E 4 HOH A 1 2001 2001 HOH HOH . E 4 HOH A 2 2002 2002 HOH HOH . E 4 HOH A 3 2003 2003 HOH HOH . E 4 HOH A 4 2004 2004 HOH HOH . E 4 HOH A 5 2005 2005 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 -17.295 23.395 -18.992 0.71 110.88 ? PG ATP 1501 A 1 HETATM 2 O O1G ATP . . . B 2 -18.075 24.087 -17.901 0.71 109.73 ? O1G ATP 1501 A 1 HETATM 3 O O2G ATP . . . B 2 -16.893 21.978 -18.654 0.71 106.36 ? O2G ATP 1501 A 1 HETATM 4 O O3G ATP . . . B 2 -16.194 24.241 -19.586 0.71 110.49 ? O3G ATP 1501 A 1 HETATM 5 P PB ATP . . . B 2 -17.897 22.89 -21.692 0.71 68.11 ? PB ATP 1501 A 1 HETATM 6 O O1B ATP . . . B 2 -17.378 24.151 -22.342 0.71 69.69 ? O1B ATP 1501 A 1 HETATM 7 O O2B ATP . . . B 2 -18.987 22.086 -22.359 0.71 71.12 ? O2B ATP 1501 A 1 HETATM 8 O O3B ATP . . . B 2 -18.367 23.222 -20.185 0.71 179.74 ? O3B ATP 1501 A 1 HETATM 9 P PA ATP . . . B 2 -15.623 21.459 -22.571 0.71 142.2 ? PA ATP 1501 A 1 HETATM 10 O O1A ATP . . . B 2 -15.472 22.591 -23.556 0.71 140.69 ? O1A ATP 1501 A 1 HETATM 11 O O2A ATP . . . B 2 -14.412 20.902 -21.865 0.71 144.54 ? O2A ATP 1501 A 1 HETATM 12 O O3A ATP . . . B 2 -16.679 21.874 -21.429 0.71 213.41 ? O3A ATP 1501 A 1 HETATM 13 O O5' ATP . . . B 2 -16.399 20.261 -23.315 0.71 78.24 ? O5' ATP 1501 A 1 HETATM 14 C C5' ATP . . . B 2 -15.95 19.711 -24.544 0.71 77.78 ? C5' ATP 1501 A 1 HETATM 15 C C4' ATP . . . B 2 -16.521 18.305 -24.666 0.71 82.31 ? C4' ATP 1501 A 1 HETATM 16 O O4' ATP . . . B 2 -17.892 18.383 -25.056 0.71 86.26 ? O4' ATP 1501 A 1 HETATM 17 C C3' ATP . . . B 2 -15.788 17.468 -25.702 0.71 81.51 ? C3' ATP 1501 A 1 HETATM 18 O O3' ATP . . . B 2 -15.265 16.303 -25.063 0.71 82.59 ? O3' ATP 1501 A 1 HETATM 19 C C2' ATP . . . B 2 -16.818 17.122 -26.762 0.71 81.11 ? C2' ATP 1501 A 1 HETATM 20 O O2' ATP . . . B 2 -16.832 15.734 -27.089 0.71 84.48 ? O2' ATP 1501 A 1 HETATM 21 C C1' ATP . . . B 2 -18.155 17.506 -26.154 0.71 81.05 ? C1' ATP 1501 A 1 HETATM 22 N N9 ATP . . . B 2 -19.021 18.198 -27.137 0.71 75.63 ? N9 ATP 1501 A 1 HETATM 23 C C8 ATP . . . B 2 -18.734 19.358 -27.76 0.71 80.15 ? C8 ATP 1501 A 1 HETATM 24 N N7 ATP . . . B 2 -19.749 19.712 -28.588 0.71 77.68 ? N7 ATP 1501 A 1 HETATM 25 C C5 ATP . . . B 2 -20.703 18.767 -28.496 0.71 71.35 ? C5 ATP 1501 A 1 HETATM 26 C C6 ATP . . . B 2 -22.034 18.525 -29.1 0.71 69.28 ? C6 ATP 1501 A 1 HETATM 27 N N6 ATP . . . B 2 -22.564 19.39 -29.997 0.71 81.37 ? N6 ATP 1501 A 1 HETATM 28 N N1 ATP . . . B 2 -22.702 17.411 -28.726 0.71 48.34 ? N1 ATP 1501 A 1 HETATM 29 C C2 ATP . . . B 2 -22.195 16.537 -27.837 0.71 37.92 ? C2 ATP 1501 A 1 HETATM 30 N N3 ATP . . . B 2 -20.995 16.699 -27.256 0.71 41.91 ? N3 ATP 1501 A 1 HETATM 31 C C4 ATP . . . B 2 -20.217 17.769 -27.538 0.71 58.8 ? C4 ATP 1501 A 1 HETATM 32 H "H5'1" ATP . . . B 2 -14.859 19.676 -24.563 0.71 101.53 ? "H5'1" ATP 1501 A 1 HETATM 33 H "H5'2" ATP . . . B 2 -16.291 20.328 -25.378 0.71 101.53 ? "H5'2" ATP 1501 A 1 HETATM 34 H H4' ATP . . . B 2 -16.44 17.807 -23.689 0.71 106.96 ? H4' ATP 1501 A 1 HETATM 35 H H3' ATP . . . B 2 -14.981 18.062 -26.152 0.71 106 ? H3' ATP 1501 A 1 HETATM 36 H HO3' ATP . . . B 2 -14.796 15.762 -25.714 0.71 107.29 ? HO3' ATP 1501 A 1 HETATM 37 H H2' ATP . . . B 2 -16.638 17.73 -27.66 0.71 105.52 ? H2' ATP 1501 A 1 HETATM 38 H HO2' ATP . . . B 2 -15.97 15.479 -27.447 0.71 109.56 ? HO2' ATP 1501 A 1 HETATM 39 H H1' ATP . . . B 2 -18.653 16.596 -25.793 0.71 105.45 ? H1' ATP 1501 A 1 HETATM 40 H H8 ATP . . . B 2 -17.823 19.926 -27.62 0.71 104.37 ? H8 ATP 1501 A 1 HETATM 41 H HN61 ATP . . . B 2 -22.05 20.218 -30.265 0.71 105.83 ? HN61 ATP 1501 A 1 HETATM 42 H HN62 ATP . . . B 2 -23.472 19.208 -30.4 0.71 105.83 ? HN62 ATP 1501 A 1 HETATM 43 H H2 ATP . . . B 2 -22.78 15.662 -27.58 0.71 53.69 ? H2 ATP 1501 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #