data_4B17
#
_model_server_result.job_id            z2n7HLX7ThLwlVrwo195dg 
_model_server_result.datetime_utc      '2024-11-04 22:37:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4b17 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1360}' 
#
_entry.id    4B17 
#
_exptl.entry_id    4B17 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4B17 
_cell.length_a            92.26 
_cell.length_b            92.26 
_cell.length_c            83.56 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4B17 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_558 y,x,-z+3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 250.68 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLY 156 A GLY 156 1_555 A N CSS 157 A CSS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A C CSS 157 A CSS 157 1_555 A N CYS 158 A CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 152 n n 
C1 C2 GOL sing 153 n n 
C1 H11 GOL sing 154 n n 
C1 H12 GOL sing 155 n n 
O1 HO1 GOL sing 156 n n 
C2 O2 GOL sing 157 n n 
C2 C3 GOL sing 158 n n 
C2 H2 GOL sing 159 n n 
O2 HO2 GOL sing 160 n n 
C3 O3 GOL sing 161 n n 
C3 H31 GOL sing 162 n n 
C3 H32 GOL sing 163 n n 
O3 HO3 GOL sing 164 n n 
#
_atom_sites.entry_id                     4B17 
_atom_sites.fract_transf_matrix[1][1]    0.010839 
_atom_sites.fract_transf_matrix[1][2]    0.006258 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012516 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011967 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SAM A 1 1358 1358 SAM SAM . 
C 3 GOL A 1 1359 1359 GOL GOL . 
D 3 GOL A 1 1360 1360 GOL GOL . 
E 4 EDO A 1 1361 1361 EDO EDO . 
F 4 EDO A 1 1362 1362 EDO EDO . 
G 4 EDO A 1 1363 1363 EDO EDO . 
H 4 EDO A 1 1364 1364 EDO EDO . 
I 4 EDO A 1 1365 1365 EDO EDO . 
J 4 EDO A 1 1366 1366 EDO EDO . 
K 4 EDO A 1 1367 1367 EDO EDO . 
L 4 EDO A 1 1368 1368 EDO EDO . 
M 4 EDO A 1 1369 1369 EDO EDO . 
N 4 EDO A 1 1370 1370 EDO EDO . 
O 4 EDO A 1 1371 1371 EDO EDO . 
P 5 SO4 A 1 1372 1372 SO4 SO4 . 
Q 5 SO4 A 1 1373 1373 SO4 SO4 . 
R 5 SO4 A 1 1374 1374 SO4 SO4 . 
S 5 SO4 A 1 1375 1375 SO4 SO4 . 
T 6 HOH A 1 2001 2001 HOH HOH . 
T 6 HOH A 2 2002 2002 HOH HOH . 
T 6 HOH A 3 2003 2003 HOH HOH . 
T 6 HOH A 4 2004 2004 HOH HOH . 
T 6 HOH A 5 2005 2005 HOH HOH . 
T 6 HOH A 6 2006 2006 HOH HOH . 
T 6 HOH A 7 2007 2007 HOH HOH . 
T 6 HOH A 8 2008 2008 HOH HOH . 
T 6 HOH A 9 2009 2009 HOH HOH . 
T 6 HOH A 10 2010 2010 HOH HOH . 
T 6 HOH A 11 2011 2011 HOH HOH . 
T 6 HOH A 12 2012 2012 HOH HOH . 
T 6 HOH A 13 2013 2013 HOH HOH . 
T 6 HOH A 14 2014 2014 HOH HOH . 
T 6 HOH A 15 2015 2015 HOH HOH . 
T 6 HOH A 16 2016 2016 HOH HOH . 
T 6 HOH A 17 2017 2017 HOH HOH . 
T 6 HOH A 18 2018 2018 HOH HOH . 
T 6 HOH A 19 2019 2019 HOH HOH . 
T 6 HOH A 20 2020 2020 HOH HOH . 
T 6 HOH A 21 2021 2021 HOH HOH . 
T 6 HOH A 22 2022 2022 HOH HOH . 
T 6 HOH A 23 2023 2023 HOH HOH . 
T 6 HOH A 24 2024 2024 HOH HOH . 
T 6 HOH A 25 2025 2025 HOH HOH . 
T 6 HOH A 26 2026 2026 HOH HOH . 
T 6 HOH A 27 2027 2027 HOH HOH . 
T 6 HOH A 28 2028 2028 HOH HOH . 
T 6 HOH A 29 2029 2029 HOH HOH . 
T 6 HOH A 30 2030 2030 HOH HOH . 
T 6 HOH A 31 2031 2031 HOH HOH . 
T 6 HOH A 32 2032 2032 HOH HOH . 
T 6 HOH A 33 2033 2033 HOH HOH . 
T 6 HOH A 34 2034 2034 HOH HOH . 
T 6 HOH A 35 2035 2035 HOH HOH . 
T 6 HOH A 36 2036 2036 HOH HOH . 
T 6 HOH A 37 2037 2037 HOH HOH . 
T 6 HOH A 38 2038 2038 HOH HOH . 
T 6 HOH A 39 2039 2039 HOH HOH . 
T 6 HOH A 40 2040 2040 HOH HOH . 
T 6 HOH A 41 2041 2041 HOH HOH . 
T 6 HOH A 42 2042 2042 HOH HOH . 
T 6 HOH A 43 2043 2043 HOH HOH . 
T 6 HOH A 44 2044 2044 HOH HOH . 
T 6 HOH A 45 2045 2045 HOH HOH . 
T 6 HOH A 46 2046 2046 HOH HOH . 
T 6 HOH A 47 2047 2047 HOH HOH . 
T 6 HOH A 48 2048 2048 HOH HOH . 
T 6 HOH A 49 2049 2049 HOH HOH . 
T 6 HOH A 50 2050 2050 HOH HOH . 
T 6 HOH A 51 2051 2051 HOH HOH . 
T 6 HOH A 52 2052 2052 HOH HOH . 
T 6 HOH A 53 2053 2053 HOH HOH . 
T 6 HOH A 54 2054 2054 HOH HOH . 
T 6 HOH A 55 2055 2055 HOH HOH . 
T 6 HOH A 56 2056 2056 HOH HOH . 
T 6 HOH A 57 2057 2057 HOH HOH . 
T 6 HOH A 58 2058 2058 HOH HOH . 
T 6 HOH A 59 2059 2059 HOH HOH . 
T 6 HOH A 60 2060 2060 HOH HOH . 
T 6 HOH A 61 2061 2061 HOH HOH . 
T 6 HOH A 62 2062 2062 HOH HOH . 
T 6 HOH A 63 2063 2063 HOH HOH . 
T 6 HOH A 64 2064 2064 HOH HOH . 
T 6 HOH A 65 2065 2065 HOH HOH . 
T 6 HOH A 66 2066 2066 HOH HOH . 
T 6 HOH A 67 2067 2067 HOH HOH . 
T 6 HOH A 68 2068 2068 HOH HOH . 
T 6 HOH A 69 2069 2069 HOH HOH . 
T 6 HOH A 70 2070 2070 HOH HOH . 
T 6 HOH A 71 2071 2071 HOH HOH . 
T 6 HOH A 72 2072 2072 HOH HOH . 
T 6 HOH A 73 2073 2073 HOH HOH . 
T 6 HOH A 74 2074 2074 HOH HOH . 
T 6 HOH A 75 2075 2075 HOH HOH . 
T 6 HOH A 76 2076 2076 HOH HOH . 
T 6 HOH A 77 2077 2077 HOH HOH . 
T 6 HOH A 78 2078 2078 HOH HOH . 
T 6 HOH A 79 2079 2079 HOH HOH . 
T 6 HOH A 80 2080 2080 HOH HOH . 
T 6 HOH A 81 2081 2081 HOH HOH . 
T 6 HOH A 82 2082 2082 HOH HOH . 
T 6 HOH A 83 2083 2083 HOH HOH . 
T 6 HOH A 84 2084 2084 HOH HOH . 
T 6 HOH A 85 2085 2085 HOH HOH . 
T 6 HOH A 86 2086 2086 HOH HOH . 
T 6 HOH A 87 2087 2087 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 48.976 51.762 104.569 1 32.64 ? C1 GOL 1360 A 1 
HETATM 2 O O1 GOL . . . D 3 49.823 52.221 105.612 1 30.75 ? O1 GOL 1360 A 1 
HETATM 3 C C2 GOL . . . D 3 48.645 52.888 103.584 1 31.6 ? C2 GOL 1360 A 1 
HETATM 4 O O2 GOL . . . D 3 48.04 53.974 104.258 1 24.47 ? O2 GOL 1360 A 1 
HETATM 5 C C3 GOL . . . D 3 47.696 52.38 102.498 1 32.09 ? C3 GOL 1360 A 1 
HETATM 6 O O3 GOL . . . D 3 47.557 53.328 101.448 1 31.81 ? O3 GOL 1360 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#