data_4B1U # _model_server_result.job_id oG-2K8k-sG6a_VIHeswHiQ _model_server_result.datetime_utc '2024-11-25 00:21:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4b1u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1376}' # _entry.id 4B1U # _exptl.entry_id 4B1U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 395.513 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LATRUNCULIN B' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4B1U _cell.length_a 77.6 _cell.length_b 77.6 _cell.length_c 128.23 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4B1U _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O1G ATP . B ATP 1377 1_555 E MG MG . B MG 1378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc2 D O1B ATP . B ATP 1377 1_555 E MG MG . B MG 1378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc3 E MG MG . B MG 1378 1_555 H O HOH . B HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc4 E MG MG . B MG 1378 1_555 H O HOH . B HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc5 E MG MG . B MG 1378 1_555 H O HOH . B HOH 2061 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc6 E MG MG . B MG 1378 1_555 H O HOH . B HOH 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc7 B ND1 HIS 3 M HIS 135 1_555 G CA CA . M CA 1163 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.064 ? # _chem_comp.formula 'C20 H29 N O5 S' _chem_comp.formula_weight 395.513 _chem_comp.id LAB _chem_comp.mon_nstd_flag . _chem_comp.name 'LATRUNCULIN B' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C18 LAB doub 222 n n C18 N1 LAB sing 223 n n C18 S1 LAB sing 224 n n N1 C16 LAB sing 225 n n N1 HN1 LAB sing 226 n n C16 C15 LAB sing 227 n n C16 C17 LAB sing 228 n n C16 H16 LAB sing 229 n n C17 S1 LAB sing 230 n n C17 H171 LAB sing 231 n n C17 H172 LAB sing 232 n n C15 O3 LAB sing 233 n n C15 C14 LAB sing 234 n n C15 O4 LAB sing 235 n n O4 HO4 LAB sing 236 n n C14 C13 LAB sing 237 n n C14 H141 LAB sing 238 n n C14 H142 LAB sing 239 n n C13 C12 LAB sing 240 n n C13 O2 LAB sing 241 n n C13 H13 LAB sing 242 n n O2 C1 LAB sing 243 n n C12 C11 LAB sing 244 n n C12 H121 LAB sing 245 n n C12 H122 LAB sing 246 n n C11 C10 LAB sing 247 n n C11 O3 LAB sing 248 n n C11 H11 LAB sing 249 n n C10 C9 LAB sing 250 n n C10 H101 LAB sing 251 n n C10 H102 LAB sing 252 n n C9 C8 LAB sing 253 n n C9 H91 LAB sing 254 n n C9 H92 LAB sing 255 n n C8 C7 LAB sing 256 n n C8 C20 LAB sing 257 n n C8 H8 LAB sing 258 n n C20 H201 LAB sing 259 n n C20 H202 LAB sing 260 n n C20 H203 LAB sing 261 n n C7 C6 LAB doub 262 z n C7 H7 LAB sing 263 n n C6 C5 LAB sing 264 n n C6 H6 LAB sing 265 n n C5 C4 LAB sing 266 n n C5 H51 LAB sing 267 n n C5 H52 LAB sing 268 n n C4 C3 LAB sing 269 n n C4 H41 LAB sing 270 n n C4 H42 LAB sing 271 n n C3 C2 LAB doub 272 z n C3 C19 LAB sing 273 n n C19 H191 LAB sing 274 n n C19 H192 LAB sing 275 n n C19 H193 LAB sing 276 n n C2 C1 LAB sing 277 n n C2 H2 LAB sing 278 n n C1 O1 LAB doub 279 n n # _atom_sites.entry_id 4B1U _atom_sites.fract_transf_matrix[1][1] 0.012887 _atom_sites.fract_transf_matrix[1][2] 0.00744 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007798 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 LAB B 1 1376 1376 LAB LAB . D 4 ATP B 1 1377 1377 ATP ATP . E 5 MG B 1 1378 1378 MG MG . F 6 TRS B 1 1379 1379 TRS TRS . G 7 CA M 1 1163 1163 CA CA . H 8 HOH B 1 2001 2001 HOH HOH . H 8 HOH B 2 2002 2002 HOH HOH . H 8 HOH B 3 2003 2003 HOH HOH . H 8 HOH B 4 2004 2004 HOH HOH . H 8 HOH B 5 2005 2005 HOH HOH . H 8 HOH B 6 2006 2006 HOH HOH . H 8 HOH B 7 2007 2007 HOH HOH . H 8 HOH B 8 2008 2008 HOH HOH . H 8 HOH B 9 2009 2009 HOH HOH . H 8 HOH B 10 2010 2010 HOH HOH . H 8 HOH B 11 2011 2011 HOH HOH . H 8 HOH B 12 2012 2012 HOH HOH . H 8 HOH B 13 2013 2013 HOH HOH . H 8 HOH B 14 2014 2014 HOH HOH . H 8 HOH B 15 2015 2015 HOH HOH . H 8 HOH B 16 2016 2016 HOH HOH . H 8 HOH B 17 2017 2017 HOH HOH . H 8 HOH B 18 2018 2018 HOH HOH . H 8 HOH B 19 2019 2019 HOH HOH . H 8 HOH B 20 2020 2020 HOH HOH . H 8 HOH B 21 2021 2021 HOH HOH . H 8 HOH B 22 2022 2022 HOH HOH . H 8 HOH B 23 2023 2023 HOH HOH . H 8 HOH B 24 2024 2024 HOH HOH . H 8 HOH B 25 2025 2025 HOH HOH . H 8 HOH B 26 2026 2026 HOH HOH . H 8 HOH B 27 2027 2027 HOH HOH . H 8 HOH B 28 2028 2028 HOH HOH . H 8 HOH B 29 2029 2029 HOH HOH . H 8 HOH B 30 2030 2030 HOH HOH . H 8 HOH B 31 2031 2031 HOH HOH . H 8 HOH B 32 2032 2032 HOH HOH . H 8 HOH B 33 2033 2033 HOH HOH . H 8 HOH B 34 2034 2034 HOH HOH . H 8 HOH B 35 2035 2035 HOH HOH . H 8 HOH B 36 2036 2036 HOH HOH . H 8 HOH B 37 2037 2037 HOH HOH . H 8 HOH B 38 2038 2038 HOH HOH . H 8 HOH B 39 2039 2039 HOH HOH . H 8 HOH B 40 2040 2040 HOH HOH . H 8 HOH B 41 2041 2041 HOH HOH . H 8 HOH B 42 2042 2042 HOH HOH . H 8 HOH B 43 2043 2043 HOH HOH . H 8 HOH B 44 2044 2044 HOH HOH . H 8 HOH B 45 2045 2045 HOH HOH . H 8 HOH B 46 2046 2046 HOH HOH . H 8 HOH B 47 2047 2047 HOH HOH . H 8 HOH B 48 2048 2048 HOH HOH . H 8 HOH B 49 2049 2049 HOH HOH . H 8 HOH B 50 2050 2050 HOH HOH . H 8 HOH B 51 2051 2051 HOH HOH . H 8 HOH B 52 2052 2052 HOH HOH . H 8 HOH B 53 2053 2053 HOH HOH . H 8 HOH B 54 2054 2054 HOH HOH . H 8 HOH B 55 2055 2055 HOH HOH . H 8 HOH B 56 2056 2056 HOH HOH . H 8 HOH B 57 2057 2057 HOH HOH . H 8 HOH B 58 2058 2058 HOH HOH . H 8 HOH B 59 2059 2059 HOH HOH . H 8 HOH B 60 2060 2060 HOH HOH . H 8 HOH B 61 2061 2061 HOH HOH . H 8 HOH B 62 2062 2062 HOH HOH . H 8 HOH B 63 2063 2063 HOH HOH . H 8 HOH B 64 2064 2064 HOH HOH . H 8 HOH B 65 2065 2065 HOH HOH . H 8 HOH B 66 2066 2066 HOH HOH . H 8 HOH B 67 2067 2067 HOH HOH . H 8 HOH B 68 2068 2068 HOH HOH . H 8 HOH B 69 2069 2069 HOH HOH . H 8 HOH B 70 2070 2070 HOH HOH . H 8 HOH B 71 2071 2071 HOH HOH . H 8 HOH B 72 2072 2072 HOH HOH . H 8 HOH B 73 2073 2073 HOH HOH . H 8 HOH B 74 2074 2074 HOH HOH . H 8 HOH B 75 2075 2075 HOH HOH . H 8 HOH B 76 2076 2076 HOH HOH . H 8 HOH B 77 2077 2077 HOH HOH . H 8 HOH B 78 2078 2078 HOH HOH . H 8 HOH B 79 2079 2079 HOH HOH . H 8 HOH B 80 2080 2080 HOH HOH . H 8 HOH B 81 2081 2081 HOH HOH . H 8 HOH B 82 2082 2082 HOH HOH . H 8 HOH B 83 2083 2083 HOH HOH . H 8 HOH B 84 2084 2084 HOH HOH . H 8 HOH B 85 2085 2085 HOH HOH . H 8 HOH B 86 2086 2086 HOH HOH . H 8 HOH B 87 2087 2087 HOH HOH . H 8 HOH B 88 2088 2088 HOH HOH . H 8 HOH B 89 2089 2089 HOH HOH . H 8 HOH B 90 2090 2090 HOH HOH . H 8 HOH B 91 2091 2091 HOH HOH . H 8 HOH B 92 2092 2092 HOH HOH . H 8 HOH B 93 2093 2093 HOH HOH . H 8 HOH B 94 2094 2094 HOH HOH . H 8 HOH B 95 2095 2095 HOH HOH . H 8 HOH B 96 2096 2096 HOH HOH . H 8 HOH B 97 2097 2097 HOH HOH . H 8 HOH B 98 2098 2098 HOH HOH . H 8 HOH B 99 2099 2099 HOH HOH . H 8 HOH B 100 2100 2100 HOH HOH . H 8 HOH B 101 2101 2101 HOH HOH . H 8 HOH B 102 2102 2102 HOH HOH . H 8 HOH B 103 2103 2103 HOH HOH . H 8 HOH B 104 2104 2104 HOH HOH . H 8 HOH B 105 2105 2105 HOH HOH . H 8 HOH B 106 2106 2106 HOH HOH . H 8 HOH B 107 2107 2107 HOH HOH . H 8 HOH B 108 2108 2108 HOH HOH . H 8 HOH B 109 2109 2109 HOH HOH . H 8 HOH B 110 2110 2110 HOH HOH . H 8 HOH B 111 2111 2111 HOH HOH . H 8 HOH B 112 2112 2112 HOH HOH . H 8 HOH B 113 2113 2113 HOH HOH . H 8 HOH B 114 2114 2114 HOH HOH . H 8 HOH B 115 2115 2115 HOH HOH . H 8 HOH B 116 2116 2116 HOH HOH . H 8 HOH B 117 2117 2117 HOH HOH . H 8 HOH B 118 2118 2118 HOH HOH . H 8 HOH B 119 2119 2119 HOH HOH . H 8 HOH B 120 2120 2120 HOH HOH . H 8 HOH B 121 2121 2121 HOH HOH . H 8 HOH B 122 2122 2122 HOH HOH . H 8 HOH B 123 2123 2123 HOH HOH . H 8 HOH B 124 2124 2124 HOH HOH . H 8 HOH B 125 2125 2125 HOH HOH . H 8 HOH B 126 2126 2126 HOH HOH . H 8 HOH B 127 2127 2127 HOH HOH . H 8 HOH B 128 2128 2128 HOH HOH . H 8 HOH B 129 2129 2129 HOH HOH . H 8 HOH B 130 2130 2130 HOH HOH . H 8 HOH B 131 2131 2131 HOH HOH . H 8 HOH B 132 2132 2132 HOH HOH . H 8 HOH B 133 2133 2133 HOH HOH . H 8 HOH B 134 2134 2134 HOH HOH . H 8 HOH B 135 2135 2135 HOH HOH . H 8 HOH B 136 2136 2136 HOH HOH . H 8 HOH B 137 2137 2137 HOH HOH . H 8 HOH B 138 2138 2138 HOH HOH . H 8 HOH B 139 2139 2139 HOH HOH . H 8 HOH B 140 2140 2140 HOH HOH . H 8 HOH B 141 2141 2141 HOH HOH . H 8 HOH B 142 2142 2142 HOH HOH . H 8 HOH B 143 2143 2143 HOH HOH . H 8 HOH B 144 2144 2144 HOH HOH . H 8 HOH B 145 2145 2145 HOH HOH . H 8 HOH B 146 2146 2146 HOH HOH . H 8 HOH B 147 2147 2147 HOH HOH . H 8 HOH B 148 2148 2148 HOH HOH . I 8 HOH M 1 2001 2001 HOH HOH . I 8 HOH M 2 2002 2002 HOH HOH . I 8 HOH M 3 2003 2003 HOH HOH . I 8 HOH M 4 2004 2004 HOH HOH . I 8 HOH M 5 2005 2005 HOH HOH . I 8 HOH M 6 2006 2006 HOH HOH . I 8 HOH M 7 2007 2007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 LAB . . . C 3 15.797 -17.748 14.878 1 24.4 ? O5 LAB 1376 B 1 HETATM 2 C C18 LAB . . . C 3 16.081 -18.288 15.934 1 29.27 ? C18 LAB 1376 B 1 HETATM 3 N N1 LAB . . . C 3 17.444 -18.513 16.459 1 25.59 ? N1 LAB 1376 B 1 HETATM 4 C C16 LAB . . . C 3 17.404 -19.476 17.598 1 25.48 ? C16 LAB 1376 B 1 HETATM 5 C C17 LAB . . . C 3 16.085 -19.399 18.279 1 23.57 ? C17 LAB 1376 B 1 HETATM 6 S S1 LAB . . . C 3 14.93 -18.95 17.076 1 35.61 ? S1 LAB 1376 B 1 HETATM 7 C C15 LAB . . . C 3 17.762 -20.894 17.218 1 27.46 ? C15 LAB 1376 B 1 HETATM 8 O O4 LAB . . . C 3 16.669 -21.504 16.648 1 24.14 ? O4 LAB 1376 B 1 HETATM 9 C C14 LAB . . . C 3 18.91 -20.93 16.203 1 20.02 ? C14 LAB 1376 B 1 HETATM 10 C C13 LAB . . . C 3 19.622 -22.281 16.175 1 25.51 ? C13 LAB 1376 B 1 HETATM 11 O O2 LAB . . . C 3 18.846 -23.2 15.49 1 30.03 ? O2 LAB 1376 B 1 HETATM 12 C C12 LAB . . . C 3 19.861 -22.798 17.545 1 24.59 ? C12 LAB 1376 B 1 HETATM 13 C C11 LAB . . . C 3 18.587 -22.887 18.292 1 22.75 ? C11 LAB 1376 B 1 HETATM 14 O O3 LAB . . . C 3 18.064 -21.619 18.371 1 24.19 ? O3 LAB 1376 B 1 HETATM 15 C C10 LAB . . . C 3 18.814 -23.452 19.685 1 23.45 ? C10 LAB 1376 B 1 HETATM 16 C C9 LAB . . . C 3 17.486 -23.853 20.314 1 22.08 ? C9 LAB 1376 B 1 HETATM 17 C C8 LAB . . . C 3 16.672 -24.859 19.537 1 29.22 ? C8 LAB 1376 B 1 HETATM 18 C C20 LAB . . . C 3 15.467 -25.294 20.265 1 33.33 ? C20 LAB 1376 B 1 HETATM 19 C C7 LAB . . . C 3 17.467 -26.108 19.182 1 29.21 ? C7 LAB 1376 B 1 HETATM 20 C C6 LAB . . . C 3 17.439 -26.701 17.902 1 27.51 ? C6 LAB 1376 B 1 HETATM 21 C C5 LAB . . . C 3 17.081 -25.941 16.634 1 30.01 ? C5 LAB 1376 B 1 HETATM 22 C C4 LAB . . . C 3 18.154 -26.149 15.571 1 31.46 ? C4 LAB 1376 B 1 HETATM 23 C C3 LAB . . . C 3 17.653 -25.731 14.188 1 34.83 ? C3 LAB 1376 B 1 HETATM 24 C C19 LAB . . . C 3 16.805 -26.718 13.426 1 31.32 ? C19 LAB 1376 B 1 HETATM 25 C C2 LAB . . . C 3 18.077 -24.569 13.505 1 36.67 ? C2 LAB 1376 B 1 HETATM 26 C C1 LAB . . . C 3 18.805 -23.368 14.107 1 30.74 ? C1 LAB 1376 B 1 HETATM 27 O O1 LAB . . . C 3 19.24 -22.465 13.405 1 29.67 ? O1 LAB 1376 B 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #