data_4B1U # _model_server_result.job_id 9ITlrHAdaeFB3BSw0gdSIQ _model_server_result.datetime_utc '2024-11-13 09:40:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4b1u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1377}' # _entry.id 4B1U # _exptl.entry_id 4B1U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4B1U _cell.length_a 77.6 _cell.length_b 77.6 _cell.length_c 128.23 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4B1U _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O1G ATP . B ATP 1377 1_555 E MG MG . B MG 1378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc2 D O1B ATP . B ATP 1377 1_555 E MG MG . B MG 1378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc3 E MG MG . B MG 1378 1_555 H O HOH . B HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc4 E MG MG . B MG 1378 1_555 H O HOH . B HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc5 E MG MG . B MG 1378 1_555 H O HOH . B HOH 2061 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc6 E MG MG . B MG 1378 1_555 H O HOH . B HOH 2148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc7 B ND1 HIS 3 M HIS 135 1_555 G CA CA . M CA 1163 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.064 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4B1U _atom_sites.fract_transf_matrix[1][1] 0.012887 _atom_sites.fract_transf_matrix[1][2] 0.00744 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007798 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 LAB B 1 1376 1376 LAB LAB . D 4 ATP B 1 1377 1377 ATP ATP . E 5 MG B 1 1378 1378 MG MG . F 6 TRS B 1 1379 1379 TRS TRS . G 7 CA M 1 1163 1163 CA CA . H 8 HOH B 1 2001 2001 HOH HOH . H 8 HOH B 2 2002 2002 HOH HOH . H 8 HOH B 3 2003 2003 HOH HOH . H 8 HOH B 4 2004 2004 HOH HOH . H 8 HOH B 5 2005 2005 HOH HOH . H 8 HOH B 6 2006 2006 HOH HOH . H 8 HOH B 7 2007 2007 HOH HOH . H 8 HOH B 8 2008 2008 HOH HOH . H 8 HOH B 9 2009 2009 HOH HOH . H 8 HOH B 10 2010 2010 HOH HOH . H 8 HOH B 11 2011 2011 HOH HOH . H 8 HOH B 12 2012 2012 HOH HOH . H 8 HOH B 13 2013 2013 HOH HOH . H 8 HOH B 14 2014 2014 HOH HOH . H 8 HOH B 15 2015 2015 HOH HOH . H 8 HOH B 16 2016 2016 HOH HOH . H 8 HOH B 17 2017 2017 HOH HOH . H 8 HOH B 18 2018 2018 HOH HOH . H 8 HOH B 19 2019 2019 HOH HOH . H 8 HOH B 20 2020 2020 HOH HOH . H 8 HOH B 21 2021 2021 HOH HOH . H 8 HOH B 22 2022 2022 HOH HOH . H 8 HOH B 23 2023 2023 HOH HOH . H 8 HOH B 24 2024 2024 HOH HOH . H 8 HOH B 25 2025 2025 HOH HOH . H 8 HOH B 26 2026 2026 HOH HOH . H 8 HOH B 27 2027 2027 HOH HOH . H 8 HOH B 28 2028 2028 HOH HOH . H 8 HOH B 29 2029 2029 HOH HOH . H 8 HOH B 30 2030 2030 HOH HOH . H 8 HOH B 31 2031 2031 HOH HOH . H 8 HOH B 32 2032 2032 HOH HOH . H 8 HOH B 33 2033 2033 HOH HOH . H 8 HOH B 34 2034 2034 HOH HOH . H 8 HOH B 35 2035 2035 HOH HOH . H 8 HOH B 36 2036 2036 HOH HOH . H 8 HOH B 37 2037 2037 HOH HOH . H 8 HOH B 38 2038 2038 HOH HOH . H 8 HOH B 39 2039 2039 HOH HOH . H 8 HOH B 40 2040 2040 HOH HOH . H 8 HOH B 41 2041 2041 HOH HOH . H 8 HOH B 42 2042 2042 HOH HOH . H 8 HOH B 43 2043 2043 HOH HOH . H 8 HOH B 44 2044 2044 HOH HOH . H 8 HOH B 45 2045 2045 HOH HOH . H 8 HOH B 46 2046 2046 HOH HOH . H 8 HOH B 47 2047 2047 HOH HOH . H 8 HOH B 48 2048 2048 HOH HOH . H 8 HOH B 49 2049 2049 HOH HOH . H 8 HOH B 50 2050 2050 HOH HOH . H 8 HOH B 51 2051 2051 HOH HOH . H 8 HOH B 52 2052 2052 HOH HOH . H 8 HOH B 53 2053 2053 HOH HOH . H 8 HOH B 54 2054 2054 HOH HOH . H 8 HOH B 55 2055 2055 HOH HOH . H 8 HOH B 56 2056 2056 HOH HOH . H 8 HOH B 57 2057 2057 HOH HOH . H 8 HOH B 58 2058 2058 HOH HOH . H 8 HOH B 59 2059 2059 HOH HOH . H 8 HOH B 60 2060 2060 HOH HOH . H 8 HOH B 61 2061 2061 HOH HOH . H 8 HOH B 62 2062 2062 HOH HOH . H 8 HOH B 63 2063 2063 HOH HOH . H 8 HOH B 64 2064 2064 HOH HOH . H 8 HOH B 65 2065 2065 HOH HOH . H 8 HOH B 66 2066 2066 HOH HOH . H 8 HOH B 67 2067 2067 HOH HOH . H 8 HOH B 68 2068 2068 HOH HOH . H 8 HOH B 69 2069 2069 HOH HOH . H 8 HOH B 70 2070 2070 HOH HOH . H 8 HOH B 71 2071 2071 HOH HOH . H 8 HOH B 72 2072 2072 HOH HOH . H 8 HOH B 73 2073 2073 HOH HOH . H 8 HOH B 74 2074 2074 HOH HOH . H 8 HOH B 75 2075 2075 HOH HOH . H 8 HOH B 76 2076 2076 HOH HOH . H 8 HOH B 77 2077 2077 HOH HOH . H 8 HOH B 78 2078 2078 HOH HOH . H 8 HOH B 79 2079 2079 HOH HOH . H 8 HOH B 80 2080 2080 HOH HOH . H 8 HOH B 81 2081 2081 HOH HOH . H 8 HOH B 82 2082 2082 HOH HOH . H 8 HOH B 83 2083 2083 HOH HOH . H 8 HOH B 84 2084 2084 HOH HOH . H 8 HOH B 85 2085 2085 HOH HOH . H 8 HOH B 86 2086 2086 HOH HOH . H 8 HOH B 87 2087 2087 HOH HOH . H 8 HOH B 88 2088 2088 HOH HOH . H 8 HOH B 89 2089 2089 HOH HOH . H 8 HOH B 90 2090 2090 HOH HOH . H 8 HOH B 91 2091 2091 HOH HOH . H 8 HOH B 92 2092 2092 HOH HOH . H 8 HOH B 93 2093 2093 HOH HOH . H 8 HOH B 94 2094 2094 HOH HOH . H 8 HOH B 95 2095 2095 HOH HOH . H 8 HOH B 96 2096 2096 HOH HOH . H 8 HOH B 97 2097 2097 HOH HOH . H 8 HOH B 98 2098 2098 HOH HOH . H 8 HOH B 99 2099 2099 HOH HOH . H 8 HOH B 100 2100 2100 HOH HOH . H 8 HOH B 101 2101 2101 HOH HOH . H 8 HOH B 102 2102 2102 HOH HOH . H 8 HOH B 103 2103 2103 HOH HOH . H 8 HOH B 104 2104 2104 HOH HOH . H 8 HOH B 105 2105 2105 HOH HOH . H 8 HOH B 106 2106 2106 HOH HOH . H 8 HOH B 107 2107 2107 HOH HOH . H 8 HOH B 108 2108 2108 HOH HOH . H 8 HOH B 109 2109 2109 HOH HOH . H 8 HOH B 110 2110 2110 HOH HOH . H 8 HOH B 111 2111 2111 HOH HOH . H 8 HOH B 112 2112 2112 HOH HOH . H 8 HOH B 113 2113 2113 HOH HOH . H 8 HOH B 114 2114 2114 HOH HOH . H 8 HOH B 115 2115 2115 HOH HOH . H 8 HOH B 116 2116 2116 HOH HOH . H 8 HOH B 117 2117 2117 HOH HOH . H 8 HOH B 118 2118 2118 HOH HOH . H 8 HOH B 119 2119 2119 HOH HOH . H 8 HOH B 120 2120 2120 HOH HOH . H 8 HOH B 121 2121 2121 HOH HOH . H 8 HOH B 122 2122 2122 HOH HOH . H 8 HOH B 123 2123 2123 HOH HOH . H 8 HOH B 124 2124 2124 HOH HOH . H 8 HOH B 125 2125 2125 HOH HOH . H 8 HOH B 126 2126 2126 HOH HOH . H 8 HOH B 127 2127 2127 HOH HOH . H 8 HOH B 128 2128 2128 HOH HOH . H 8 HOH B 129 2129 2129 HOH HOH . H 8 HOH B 130 2130 2130 HOH HOH . H 8 HOH B 131 2131 2131 HOH HOH . H 8 HOH B 132 2132 2132 HOH HOH . H 8 HOH B 133 2133 2133 HOH HOH . H 8 HOH B 134 2134 2134 HOH HOH . H 8 HOH B 135 2135 2135 HOH HOH . H 8 HOH B 136 2136 2136 HOH HOH . H 8 HOH B 137 2137 2137 HOH HOH . H 8 HOH B 138 2138 2138 HOH HOH . H 8 HOH B 139 2139 2139 HOH HOH . H 8 HOH B 140 2140 2140 HOH HOH . H 8 HOH B 141 2141 2141 HOH HOH . H 8 HOH B 142 2142 2142 HOH HOH . H 8 HOH B 143 2143 2143 HOH HOH . H 8 HOH B 144 2144 2144 HOH HOH . H 8 HOH B 145 2145 2145 HOH HOH . H 8 HOH B 146 2146 2146 HOH HOH . H 8 HOH B 147 2147 2147 HOH HOH . H 8 HOH B 148 2148 2148 HOH HOH . I 8 HOH M 1 2001 2001 HOH HOH . I 8 HOH M 2 2002 2002 HOH HOH . I 8 HOH M 3 2003 2003 HOH HOH . I 8 HOH M 4 2004 2004 HOH HOH . I 8 HOH M 5 2005 2005 HOH HOH . I 8 HOH M 6 2006 2006 HOH HOH . I 8 HOH M 7 2007 2007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 4 26.467 -15.846 14.182 1 20.81 ? PG ATP 1377 B 1 HETATM 2 O O1G ATP . . . D 4 27.418 -15.921 13.007 1 16.35 ? O1G ATP 1377 B 1 HETATM 3 O O2G ATP . . . D 4 25.57 -14.68 14.186 1 17.25 ? O2G ATP 1377 B 1 HETATM 4 O O3G ATP . . . D 4 27.139 -16.147 15.51 0.83 24.1 ? O3G ATP 1377 B 1 HETATM 5 P PB ATP . . . D 4 25.568 -18.494 13.309 1 15.31 ? PB ATP 1377 B 1 HETATM 6 O O1B ATP . . . D 4 26.86 -18.711 12.603 1 16.58 ? O1B ATP 1377 B 1 HETATM 7 O O2B ATP . . . D 4 25.212 -19.582 14.316 1 18.64 ? O2B ATP 1377 B 1 HETATM 8 O O3B ATP . . . D 4 25.356 -17.037 13.986 1 16.77 ? O3B ATP 1377 B 1 HETATM 9 P PA ATP . . . D 4 24.247 -19.31 10.908 1 17.39 ? PA ATP 1377 B 1 HETATM 10 O O1A ATP . . . D 4 24.541 -20.752 11.236 1 16.44 ? O1A ATP 1377 B 1 HETATM 11 O O2A ATP . . . D 4 25.073 -18.71 9.79 1 18.16 ? O2A ATP 1377 B 1 HETATM 12 O O3A ATP . . . D 4 24.348 -18.387 12.245 1 13.81 ? O3A ATP 1377 B 1 HETATM 13 O O5' ATP . . . D 4 22.717 -19.047 10.599 1 16.13 ? O5' ATP 1377 B 1 HETATM 14 C C5' ATP . . . D 4 21.699 -19.279 11.57 1 14.43 ? C5' ATP 1377 B 1 HETATM 15 C C4' ATP . . . D 4 20.568 -18.28 11.362 1 16.18 ? C4' ATP 1377 B 1 HETATM 16 O O4' ATP . . . D 4 20.242 -18.244 9.971 1 22.19 ? O4' ATP 1377 B 1 HETATM 17 C C3' ATP . . . D 4 19.282 -18.672 12.089 1 16.53 ? C3' ATP 1377 B 1 HETATM 18 O O3' ATP . . . D 4 18.642 -17.473 12.54 1 22.59 ? O3' ATP 1377 B 1 HETATM 19 C C2' ATP . . . D 4 18.43 -19.28 11.001 1 16.83 ? C2' ATP 1377 B 1 HETATM 20 O O2' ATP . . . D 4 17.038 -19.162 11.283 1 18.75 ? O2' ATP 1377 B 1 HETATM 21 C C1' ATP . . . D 4 18.84 -18.414 9.813 1 16.29 ? C1' ATP 1377 B 1 HETATM 22 N N9 ATP . . . D 4 18.527 -19.112 8.56 1 20.98 ? N9 ATP 1377 B 1 HETATM 23 C C8 ATP . . . D 4 18.974 -20.326 8.19 1 20.59 ? C8 ATP 1377 B 1 HETATM 24 N N7 ATP . . . D 4 18.478 -20.65 6.978 1 22.72 ? N7 ATP 1377 B 1 HETATM 25 C C5 ATP . . . D 4 17.692 -19.641 6.58 1 21.42 ? C5 ATP 1377 B 1 HETATM 26 C C6 ATP . . . D 4 16.852 -19.343 5.402 1 19.7 ? C6 ATP 1377 B 1 HETATM 27 N N6 ATP . . . D 4 16.743 -20.232 4.394 1 14.63 ? N6 ATP 1377 B 1 HETATM 28 N N1 ATP . . . D 4 16.185 -18.176 5.396 1 21.64 ? N1 ATP 1377 B 1 HETATM 29 C C2 ATP . . . D 4 16.271 -17.294 6.399 1 22.2 ? C2 ATP 1377 B 1 HETATM 30 N N3 ATP . . . D 4 17.03 -17.486 7.487 1 19.44 ? N3 ATP 1377 B 1 HETATM 31 C C4 ATP . . . D 4 17.728 -18.631 7.629 1 17.78 ? C4 ATP 1377 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #