data_4B1Z
#
_model_server_result.job_id            M-0Kpe9iC6z6zAF5eN-MzA 
_model_server_result.datetime_utc      '2024-11-13 09:47:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4b1z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1376}' 
#
_entry.id    4B1Z 
#
_exptl.entry_id    4B1Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4B1Z 
_cell.length_a            127.06 
_cell.length_b            142.89 
_cell.length_c            184.38 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4B1Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 M N N 
? 3 P N N 
? 3 T N N 
? 3 V N N 
? 3 Y N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 I O2G ATP . A ATP 1376 1_555 J MG MG . A MG 1377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? 
metalc ? metalc2 I O1B ATP . A ATP 1376 1_555 J MG MG . A MG 1377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? 
metalc ? metalc3 M O2G ATP . B ATP 1376 1_555 N MG MG . B MG 1377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? 
metalc ? metalc4 M O1B ATP . B ATP 1376 1_555 N MG MG . B MG 1377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? 
metalc ? metalc5 P O2G ATP . C ATP 1376 1_555 Q MG MG . C MG 1377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? 
metalc ? metalc6 P O1B ATP . C ATP 1376 1_555 Q MG MG . C MG 1377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? 
metalc ? metalc7 T O1B ATP . D ATP 1376 1_555 U MG MG . D MG 1377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? 
metalc ? metalc8 T O2G ATP . D ATP 1376 1_555 U MG MG . D MG 1377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? 
metalc ? metalc9 V O1B ATP . E ATP 1376 1_555 W MG MG . E MG 1377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? 
metalc ? metalc10 Y O1B ATP . F ATP 1376 1_555 Z MG MG . F MG 1377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? 
metalc ? metalc11 Y O2G ATP . F ATP 1376 1_555 Z MG MG . F MG 1377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.9 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     4B1Z 
_atom_sites.fract_transf_matrix[1][1]    0.00787 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006998 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005424 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 ATP A 1 1376 1376 ATP ATP . 
J 4 MG A 1 1377 1377 MG MG . 
K 5 GOL A 1 1378 1378 GOL GOL . 
L 5 GOL A 1 1379 1379 GOL GOL . 
M 3 ATP B 1 1376 1376 ATP ATP . 
N 4 MG B 1 1377 1377 MG MG . 
O 5 GOL B 1 1378 1378 GOL GOL . 
P 3 ATP C 1 1376 1376 ATP ATP . 
Q 4 MG C 1 1377 1377 MG MG . 
R 5 GOL C 1 1378 1378 GOL GOL . 
S 5 GOL C 1 1379 1379 GOL GOL . 
T 3 ATP D 1 1376 1376 ATP ATP . 
U 4 MG D 1 1377 1377 MG MG . 
V 3 ATP E 1 1376 1376 ATP ATP . 
W 4 MG E 1 1377 1377 MG MG . 
X 5 GOL E 1 1378 1378 GOL GOL . 
Y 3 ATP F 1 1376 1376 ATP ATP . 
Z 4 MG F 1 1377 1377 MG MG . 
AA 5 GOL F 1 1378 1378 GOL GOL . 
BA 5 GOL N 1 1529 1529 GOL GOL . 
CA 6 HOH E 1 2001 2001 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . M 3 -37.798 -1.997 1.548 1 81.05 ? PG ATP 1376 B 1 
HETATM 2 O O1G ATP . . . M 3 -38.897 -2.88 1.012 1 81.05 ? O1G ATP 1376 B 1 
HETATM 3 O O2G ATP . . . M 3 -36.429 -2.287 0.976 1 81.05 ? O2G ATP 1376 B 1 
HETATM 4 O O3G ATP . . . M 3 -37.81 -1.852 3.053 1 81.05 ? O3G ATP 1376 B 1 
HETATM 5 P PB ATP . . . M 3 -37.954 -0.02 -0.492 1 81.05 ? PB ATP 1376 B 1 
HETATM 6 O O1B ATP . . . M 3 -37.339 -1.118 -1.326 1 81.05 ? O1B ATP 1376 B 1 
HETATM 7 O O2B ATP . . . M 3 -39.222 0.663 -0.95 1 81.05 ? O2B ATP 1376 B 1 
HETATM 8 O O3B ATP . . . M 3 -38.161 -0.512 1.031 1 81.05 ? O3B ATP 1376 B 1 
HETATM 9 P PA ATP . . . M 3 -35.871 1.613 -1.429 1 81.05 ? PA ATP 1376 B 1 
HETATM 10 O O1A ATP . . . M 3 -34.735 0.627 -1.571 1 81.05 ? O1A ATP 1376 B 1 
HETATM 11 O O2A ATP . . . M 3 -36.694 1.982 -2.639 1 81.05 ? O2A ATP 1376 B 1 
HETATM 12 O O3A ATP . . . M 3 -36.863 1.134 -0.26 1 81.05 ? O3A ATP 1376 B 1 
HETATM 13 O O5' ATP . . . M 3 -35.309 2.965 -0.772 1 81.05 ? O5' ATP 1376 B 1 
HETATM 14 C C5' ATP . . . M 3 -36.177 4.079 -0.593 1 81.05 ? C5' ATP 1376 B 1 
HETATM 15 C C4' ATP . . . M 3 -35.577 4.971 0.482 1 81.05 ? C4' ATP 1376 B 1 
HETATM 16 O O4' ATP . . . M 3 -34.265 5.363 0.087 1 81.05 ? O4' ATP 1376 B 1 
HETATM 17 C C3' ATP . . . M 3 -36.381 6.24 0.699 1 81.05 ? C3' ATP 1376 B 1 
HETATM 18 O O3' ATP . . . M 3 -36.913 6.236 2.027 1 81.05 ? O3' ATP 1376 B 1 
HETATM 19 C C2' ATP . . . M 3 -35.407 7.39 0.538 1 81.05 ? C2' ATP 1376 B 1 
HETATM 20 O O2' ATP . . . M 3 -35.44 8.221 1.7 1 81.05 ? O2' ATP 1376 B 1 
HETATM 21 C C1' ATP . . . M 3 -34.04 6.741 0.381 1 81.05 ? C1' ATP 1376 B 1 
HETATM 22 N N9 ATP . . . M 3 -33.266 7.366 -0.721 1 81.05 ? N9 ATP 1376 B 1 
HETATM 23 C C8 ATP . . . M 3 -33.634 7.425 -2.015 1 81.05 ? C8 ATP 1376 B 1 
HETATM 24 N N7 ATP . . . M 3 -32.696 8.065 -2.759 1 81.05 ? N7 ATP 1376 B 1 
HETATM 25 C C5 ATP . . . M 3 -31.699 8.43 -1.932 1 81.05 ? C5 ATP 1376 B 1 
HETATM 26 C C6 ATP . . . M 3 -30.405 9.14 -2.062 1 81.05 ? C6 ATP 1376 B 1 
HETATM 27 N N6 ATP . . . M 3 -29.976 9.598 -3.263 1 81.05 ? N6 ATP 1376 B 1 
HETATM 28 N N1 ATP . . . M 3 -29.666 9.308 -0.941 1 81.05 ? N1 ATP 1376 B 1 
HETATM 29 C C2 ATP . . . M 3 -30.081 8.855 0.256 1 81.05 ? C2 ATP 1376 B 1 
HETATM 30 N N3 ATP . . . M 3 -31.242 8.206 0.443 1 81.05 ? N3 ATP 1376 B 1 
HETATM 31 C C4 ATP . . . M 3 -32.082 7.968 -0.591 1 81.05 ? C4 ATP 1376 B 1 
#
_model_server_stats.io_time_ms              37 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#