data_4B1Z # _model_server_result.job_id 59_UkaJyVsw5tLAVyI5riQ _model_server_result.datetime_utc '2024-11-25 01:38:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4b1z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":1376}' # _entry.id 4B1Z # _exptl.entry_id 4B1Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4B1Z _cell.length_a 127.06 _cell.length_b 142.89 _cell.length_c 184.38 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4B1Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 M N N ? 3 P N N ? 3 T N N ? 3 V N N ? 3 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 I O2G ATP . A ATP 1376 1_555 J MG MG . A MG 1377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc2 I O1B ATP . A ATP 1376 1_555 J MG MG . A MG 1377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc3 M O2G ATP . B ATP 1376 1_555 N MG MG . B MG 1377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc4 M O1B ATP . B ATP 1376 1_555 N MG MG . B MG 1377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc5 P O2G ATP . C ATP 1376 1_555 Q MG MG . C MG 1377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc6 P O1B ATP . C ATP 1376 1_555 Q MG MG . C MG 1377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc7 T O1B ATP . D ATP 1376 1_555 U MG MG . D MG 1377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc8 T O2G ATP . D ATP 1376 1_555 U MG MG . D MG 1377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? metalc ? metalc9 V O1B ATP . E ATP 1376 1_555 W MG MG . E MG 1377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? metalc ? metalc10 Y O1B ATP . F ATP 1376 1_555 Z MG MG . F MG 1377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc11 Y O2G ATP . F ATP 1376 1_555 Z MG MG . F MG 1377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.9 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4B1Z _atom_sites.fract_transf_matrix[1][1] 0.00787 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005424 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 ATP A 1 1376 1376 ATP ATP . J 4 MG A 1 1377 1377 MG MG . K 5 GOL A 1 1378 1378 GOL GOL . L 5 GOL A 1 1379 1379 GOL GOL . M 3 ATP B 1 1376 1376 ATP ATP . N 4 MG B 1 1377 1377 MG MG . O 5 GOL B 1 1378 1378 GOL GOL . P 3 ATP C 1 1376 1376 ATP ATP . Q 4 MG C 1 1377 1377 MG MG . R 5 GOL C 1 1378 1378 GOL GOL . S 5 GOL C 1 1379 1379 GOL GOL . T 3 ATP D 1 1376 1376 ATP ATP . U 4 MG D 1 1377 1377 MG MG . V 3 ATP E 1 1376 1376 ATP ATP . W 4 MG E 1 1377 1377 MG MG . X 5 GOL E 1 1378 1378 GOL GOL . Y 3 ATP F 1 1376 1376 ATP ATP . Z 4 MG F 1 1377 1377 MG MG . AA 5 GOL F 1 1378 1378 GOL GOL . BA 5 GOL N 1 1529 1529 GOL GOL . CA 6 HOH E 1 2001 2001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . Y 3 -14.287 -8.289 -51.183 1 91.34 ? PG ATP 1376 F 1 HETATM 2 O O1G ATP . . . Y 3 -14.472 -6.911 -51.766 1 91.34 ? O1G ATP 1376 F 1 HETATM 3 O O2G ATP . . . Y 3 -13.262 -9.138 -51.897 1 91.34 ? O2G ATP 1376 F 1 HETATM 4 O O3G ATP . . . Y 3 -15.59 -9.001 -50.903 1 91.34 ? O3G ATP 1376 F 1 HETATM 5 P PB ATP . . . Y 3 -12.184 -7.5 -49.418 1 91.34 ? PB ATP 1376 F 1 HETATM 6 O O1B ATP . . . Y 3 -11.296 -7.706 -50.621 1 91.34 ? O1B ATP 1376 F 1 HETATM 7 O O2B ATP . . . Y 3 -12.308 -6.128 -48.795 1 91.34 ? O2B ATP 1376 F 1 HETATM 8 O O3B ATP . . . Y 3 -13.672 -8.052 -49.709 1 91.34 ? O3B ATP 1376 F 1 HETATM 9 P PA ATP . . . Y 3 -10.235 -8.879 -47.872 1 91.34 ? PA ATP 1376 F 1 HETATM 10 O O1A ATP . . . Y 3 -9.636 -9.768 -48.935 1 91.34 ? O1A ATP 1376 F 1 HETATM 11 O O2A ATP . . . Y 3 -9.521 -7.613 -47.464 1 91.34 ? O2A ATP 1376 F 1 HETATM 12 O O3A ATP . . . Y 3 -11.758 -8.525 -48.253 1 91.34 ? O3A ATP 1376 F 1 HETATM 13 O O5' ATP . . . Y 3 -10.491 -9.772 -46.559 1 91.34 ? O5' ATP 1376 F 1 HETATM 14 C C5' ATP . . . Y 3 -11.035 -9.172 -45.386 1 91.34 ? C5' ATP 1376 F 1 HETATM 15 C C4' ATP . . . Y 3 -11.616 -10.266 -44.502 1 91.34 ? C4' ATP 1376 F 1 HETATM 16 O O4' ATP . . . Y 3 -10.623 -11.269 -44.285 1 91.34 ? O4' ATP 1376 F 1 HETATM 17 C C3' ATP . . . Y 3 -12.033 -9.727 -43.143 1 91.34 ? C3' ATP 1376 F 1 HETATM 18 O O3' ATP . . . Y 3 -13.409 -10.033 -42.903 1 91.34 ? O3' ATP 1376 F 1 HETATM 19 C C2' ATP . . . Y 3 -11.171 -10.459 -42.135 1 91.34 ? C2' ATP 1376 F 1 HETATM 20 O O2' ATP . . . Y 3 -11.955 -10.919 -41.031 1 91.34 ? O2' ATP 1376 F 1 HETATM 21 C C1' ATP . . . Y 3 -10.582 -11.629 -42.905 1 91.34 ? C1' ATP 1376 F 1 HETATM 22 N N9 ATP . . . Y 3 -9.19 -11.891 -42.469 1 91.34 ? N9 ATP 1376 F 1 HETATM 23 C C8 ATP . . . Y 3 -8.166 -11.018 -42.501 1 91.34 ? C8 ATP 1376 F 1 HETATM 24 N N7 ATP . . . Y 3 -7.031 -11.586 -42.02 1 91.34 ? N7 ATP 1376 F 1 HETATM 25 C C5 ATP . . . Y 3 -7.329 -12.851 -41.667 1 91.34 ? C5 ATP 1376 F 1 HETATM 26 C C6 ATP . . . Y 3 -6.6 -14.004 -41.087 1 91.34 ? C6 ATP 1376 F 1 HETATM 27 N N6 ATP . . . Y 3 -5.281 -13.922 -40.783 1 91.34 ? N6 ATP 1376 F 1 HETATM 28 N N1 ATP . . . Y 3 -7.294 -15.146 -40.879 1 91.34 ? N1 ATP 1376 F 1 HETATM 29 C C2 ATP . . . Y 3 -8.603 -15.249 -41.177 1 91.34 ? C2 ATP 1376 F 1 HETATM 30 N N3 ATP . . . Y 3 -9.326 -14.245 -41.702 1 91.34 ? N3 ATP 1376 F 1 HETATM 31 C C4 ATP . . . Y 3 -8.756 -13.044 -41.961 1 91.34 ? C4 ATP 1376 F 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 417 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #