data_4B2K # _model_server_result.job_id WNZHSLv4ROrcOv133Ccilg _model_server_result.datetime_utc '2024-11-24 17:50:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4b2k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":103}' # _entry.id 4B2K # _exptl.entry_id 4B2K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4B2K _cell.length_a 142.301 _cell.length_b 142.301 _cell.length_c 142.301 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4B2K _symmetry.cell_setting ? _symmetry.Int_Tables_number 210 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'F 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 4 'crystal symmetry operation' 52_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 54_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 6 'crystal symmetry operation' 59_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 7 'crystal symmetry operation' 75_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 80_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 82_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 10 'crystal symmetry operation' 36_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 11 'crystal symmetry operation' 26_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 12 'crystal symmetry operation' 31_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 35 A VAL 35 1_555 A N 4IN 36 A 4IN 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale2 A C 4IN 36 A 4IN 36 1_555 A N ALA 37 A ALA 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? metalc ? metalc1 A OE2 GLU 14 A GLU 14 1_555 B MG MG . A MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc2 A OD2 ASP 41 A ASP 41 80_555 C MG MG . A MG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc3 B MG MG . A MG 101 1_555 H O HOH . A HOH 2025 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc4 B MG MG . A MG 101 1_555 H O HOH . A HOH 2026 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc5 B MG MG . A MG 101 1_555 H O HOH . A HOH 2032 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc6 B MG MG . A MG 101 1_555 H O HOH . A HOH 2083 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc7 C MG MG . A MG 102 1_555 H O HOH . A HOH 2090 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc8 C MG MG . A MG 102 1_555 H O HOH . A HOH 2091 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc9 C MG MG . A MG 102 1_555 H O HOH . A HOH 2092 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc10 C MG MG . A MG 102 1_555 H O HOH . A HOH 2093 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc11 D NA NA . A NA 103 1_555 E CL CL . A CL 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc12 D NA NA . A NA 103 1_555 E CL CL . A CL 104 59_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc13 D NA NA . A NA 103 1_555 E CL CL . A CL 104 80_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc14 D NA NA . A NA 103 1_555 H O HOH . A HOH 2094 80_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc15 D NA NA . A NA 103 1_555 H O HOH . A HOH 2094 59_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc16 D NA NA . A NA 103 1_555 H O HOH . A HOH 2094 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc17 D NA NA . A NA 103 1_555 H O HOH . A HOH 2095 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc18 D NA NA . A NA 103 1_555 H O HOH . A HOH 2095 59_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc19 D NA NA . A NA 103 1_555 H O HOH . A HOH 2095 80_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4B2K _atom_sites.fract_transf_matrix[1][1] 0.007027 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007027 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007027 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 101 101 MG MG . C 2 MG A 1 102 102 MG MG . D 3 NA A 1 103 103 NA NA . E 4 CL A 1 104 104 CL CL . F 5 SO4 A 1 300 300 SO4 SO4 . G 6 RBF A 1 1067 1067 RBF RBF . H 7 HOH A 1 2001 2001 HOH HOH . H 7 HOH A 2 2002 2002 HOH HOH . H 7 HOH A 3 2003 2003 HOH HOH . H 7 HOH A 4 2004 2004 HOH HOH . H 7 HOH A 5 2005 2005 HOH HOH . H 7 HOH A 6 2006 2006 HOH HOH . H 7 HOH A 7 2007 2007 HOH HOH . H 7 HOH A 8 2008 2008 HOH HOH . H 7 HOH A 9 2009 2009 HOH HOH . H 7 HOH A 10 2010 2010 HOH HOH . H 7 HOH A 11 2011 2011 HOH HOH . H 7 HOH A 12 2012 2012 HOH HOH . H 7 HOH A 13 2013 2013 HOH HOH . H 7 HOH A 14 2014 2014 HOH HOH . H 7 HOH A 15 2015 2015 HOH HOH . H 7 HOH A 16 2016 2016 HOH HOH . H 7 HOH A 17 2017 2017 HOH HOH . H 7 HOH A 18 2018 2018 HOH HOH . H 7 HOH A 19 2019 2019 HOH HOH . H 7 HOH A 20 2020 2020 HOH HOH . H 7 HOH A 21 2021 2021 HOH HOH . H 7 HOH A 22 2022 2022 HOH HOH . H 7 HOH A 23 2023 2023 HOH HOH . H 7 HOH A 24 2024 2024 HOH HOH . H 7 HOH A 25 2025 2025 HOH HOH . H 7 HOH A 26 2026 2026 HOH HOH . H 7 HOH A 27 2027 2027 HOH HOH . H 7 HOH A 28 2028 2028 HOH HOH . H 7 HOH A 29 2029 2029 HOH HOH . H 7 HOH A 30 2030 2030 HOH HOH . H 7 HOH A 31 2031 2031 HOH HOH . H 7 HOH A 32 2032 2032 HOH HOH . H 7 HOH A 33 2033 2033 HOH HOH . H 7 HOH A 34 2034 2034 HOH HOH . H 7 HOH A 35 2035 2035 HOH HOH . H 7 HOH A 36 2036 2036 HOH HOH . H 7 HOH A 37 2037 2037 HOH HOH . H 7 HOH A 38 2038 2038 HOH HOH . H 7 HOH A 39 2039 2039 HOH HOH . H 7 HOH A 40 2040 2040 HOH HOH . H 7 HOH A 41 2041 2041 HOH HOH . H 7 HOH A 42 2042 2042 HOH HOH . H 7 HOH A 43 2043 2043 HOH HOH . H 7 HOH A 44 2044 2044 HOH HOH . H 7 HOH A 45 2045 2045 HOH HOH . H 7 HOH A 46 2046 2046 HOH HOH . H 7 HOH A 47 2047 2047 HOH HOH . H 7 HOH A 48 2048 2048 HOH HOH . H 7 HOH A 49 2049 2049 HOH HOH . H 7 HOH A 50 2050 2050 HOH HOH . H 7 HOH A 51 2051 2051 HOH HOH . H 7 HOH A 52 2052 2052 HOH HOH . H 7 HOH A 53 2053 2053 HOH HOH . H 7 HOH A 54 2054 2054 HOH HOH . H 7 HOH A 55 2055 2055 HOH HOH . H 7 HOH A 56 2056 2056 HOH HOH . H 7 HOH A 57 2057 2057 HOH HOH . H 7 HOH A 58 2058 2058 HOH HOH . H 7 HOH A 59 2059 2059 HOH HOH . H 7 HOH A 60 2060 2060 HOH HOH . H 7 HOH A 61 2061 2061 HOH HOH . H 7 HOH A 62 2062 2062 HOH HOH . H 7 HOH A 63 2063 2063 HOH HOH . H 7 HOH A 64 2064 2064 HOH HOH . H 7 HOH A 65 2065 2065 HOH HOH . H 7 HOH A 66 2066 2066 HOH HOH . H 7 HOH A 67 2067 2067 HOH HOH . H 7 HOH A 68 2068 2068 HOH HOH . H 7 HOH A 69 2069 2069 HOH HOH . H 7 HOH A 70 2070 2070 HOH HOH . H 7 HOH A 71 2071 2071 HOH HOH . H 7 HOH A 72 2072 2072 HOH HOH . H 7 HOH A 73 2073 2073 HOH HOH . H 7 HOH A 74 2074 2074 HOH HOH . H 7 HOH A 75 2075 2075 HOH HOH . H 7 HOH A 76 2076 2076 HOH HOH . H 7 HOH A 77 2077 2077 HOH HOH . H 7 HOH A 78 2078 2078 HOH HOH . H 7 HOH A 79 2079 2079 HOH HOH . H 7 HOH A 80 2080 2080 HOH HOH . H 7 HOH A 81 2081 2081 HOH HOH . H 7 HOH A 82 2082 2082 HOH HOH . H 7 HOH A 83 2083 2083 HOH HOH . H 7 HOH A 84 2084 2084 HOH HOH . H 7 HOH A 85 2085 2085 HOH HOH . H 7 HOH A 86 2086 2086 HOH HOH . H 7 HOH A 87 2087 2087 HOH HOH . H 7 HOH A 88 2088 2088 HOH HOH . H 7 HOH A 89 2089 2089 HOH HOH . H 7 HOH A 90 2090 2090 HOH HOH . H 7 HOH A 91 2091 2091 HOH HOH . H 7 HOH A 92 2092 2092 HOH HOH . H 7 HOH A 93 2093 2093 HOH HOH . H 7 HOH A 94 2094 2094 HOH HOH . H 7 HOH A 95 2095 2095 HOH HOH . H 7 HOH A 96 2096 2096 HOH HOH . H 7 HOH A 97 2097 2097 HOH HOH . H 7 HOH A 98 2098 2098 HOH HOH . H 7 HOH A 99 2099 2099 HOH HOH . H 7 HOH A 100 2100 2100 HOH HOH . H 7 HOH A 101 2101 2101 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 10.241 _atom_site.Cartn_y 10.226 _atom_site.Cartn_z -10.258 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 23.14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 103 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #