data_4B3Q # _model_server_result.job_id i7w6wIvnV4R0v9RQjzQ4BQ _model_server_result.datetime_utc '2025-03-06 12:35:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4b3q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":999}' # _entry.id 4B3Q # _exptl.entry_id 4B3Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.298 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4B3Q _cell.length_a 272.7 _cell.length_b 272.7 _cell.length_c 233.1 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4B3Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 C N1 DA 5 D DA 3 1_555 D N3 U 26 R U 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N6 DA 5 D DA 3 1_555 D O4 U 26 R U 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C N3 DT 6 D DT 4 1_555 D N1 A 25 R A 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C O4 DT 6 D DT 4 1_555 D N6 A 25 R A 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C N1 DG 7 D DG 5 1_555 D N3 C 24 R C 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N2 DG 7 D DG 5 1_555 D O2 C 24 R C 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C O6 DG 7 D DG 5 1_555 D N4 C 24 R C 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C N3 DC 8 D DC 6 1_555 D N1 G 23 R G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C N4 DC 8 D DC 6 1_555 D O6 G 23 R G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C O2 DC 8 D DC 6 1_555 D N2 G 23 R G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N3 DC 9 D DC 7 1_555 D N1 G 22 R G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C N4 DC 9 D DC 7 1_555 D O6 G 22 R G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C O2 DC 9 D DC 7 1_555 D N2 G 22 R G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N3 DT 10 D DT 8 1_555 D N1 A 21 R A 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C O4 DT 10 D DT 8 1_555 D N6 A 21 R A 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C N1 DA 11 D DA 9 1_555 D N3 U 20 R U 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C N6 DA 11 D DA 9 1_555 D O4 U 20 R U 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C N3 DT 12 D DT 10 1_555 D N1 A 19 R A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C O4 DT 12 D DT 10 1_555 D N6 A 19 R A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C N1 DA 13 D DA 11 1_555 D N3 U 18 R U 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C N6 DA 13 D DA 11 1_555 D O4 U 18 R U 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C N1 DG 14 D DG 12 1_555 D N3 C 17 R C 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C N2 DG 14 D DG 12 1_555 D O2 C 17 R C 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 C O6 DG 14 D DG 12 1_555 D N4 C 17 R C 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 C N3 DT 15 D DT 13 1_555 D N1 A 16 R A 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C O4 DT 15 D DT 13 1_555 D N6 A 16 R A 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C N3 DT 16 D DT 14 1_555 D N1 A 15 R A 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C O4 DT 16 D DT 14 1_555 D N6 A 15 R A 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 C N1 DA 17 D DA 15 1_555 D N3 U 14 R U 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 C N6 DA 17 D DA 15 1_555 D O4 U 14 R U 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 C N3 DT 18 D DT 16 1_555 D N1 A 13 R A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 C O4 DT 18 D DT 16 1_555 D N6 A 13 R A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 C N3 DT 19 D DT 17 1_555 D N1 A 12 R A 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 C O4 DT 19 D DT 17 1_555 D N6 A 12 R A 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 C N1 DG 20 D DG 18 1_555 D N3 C 11 R C 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 C N2 DG 20 D DG 18 1_555 D O2 C 11 R C 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 C O6 DG 20 D DG 18 1_555 D N4 C 11 R C 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 C N3 DT 21 D DT 19 1_555 D N1 A 10 R A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 C O4 DT 21 D DT 19 1_555 D N6 A 10 R A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 C N1 DG 22 D DG 20 1_555 D N3 C 9 R C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 C N2 DG 22 D DG 20 1_555 D O2 C 9 R C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 C O6 DG 22 D DG 20 1_555 D N4 C 9 R C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 C N1 DG 23 D DG 21 1_555 D N3 C 8 R C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog44 C N2 DG 23 D DG 21 1_555 D O2 C 8 R C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog45 C O6 DG 23 D DG 21 1_555 D N4 C 8 R C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog46 C N3 DC 24 D DC 22 1_555 D N1 G 7 R G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog47 C N4 DC 24 D DC 22 1_555 D O6 G 7 R G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog48 C O2 DC 24 D DC 22 1_555 D N2 G 7 R G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog49 C N3 DC 25 D DC 23 1_555 D N1 G 6 R G 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog50 C N4 DC 25 D DC 23 1_555 D O6 G 6 R G 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog51 C O2 DC 25 D DC 23 1_555 D N2 G 6 R G 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C15 H14 N4 O' _chem_comp.formula_weight 266.298 _chem_comp.id NVP _chem_comp.mon_nstd_flag . _chem_comp.name "11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'NON-NUCLEOSIDE RT INHIBITOR NEVIRAPINE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA NVP sing 499 n n N1 C2 NVP sing 500 n n N1 C15 NVP sing 501 n n CA CB NVP sing 502 n n CA CC NVP sing 503 n n CA HCA NVP sing 504 n n CB CC NVP sing 505 n n CB HCB1 NVP sing 506 n n CB HCB2 NVP sing 507 n n CC HCC1 NVP sing 508 n n CC HCC2 NVP sing 509 n n N3 C4 NVP doub 510 n y N3 C2 NVP sing 511 n y C4 C5 NVP sing 512 n y C4 HC4 NVP sing 513 n n C5 C6 NVP doub 514 n y C5 HC5 NVP sing 515 n n C6 CD NVP sing 516 n n C6 C7 NVP sing 517 n y CD HCD1 NVP sing 518 n n CD HCD2 NVP sing 519 n n CD HCD3 NVP sing 520 n n C2 C7 NVP doub 521 n y C7 N8 NVP sing 522 n n N8 C9 NVP sing 523 n n N8 HN8 NVP sing 524 n n C9 OE NVP doub 525 n n C9 C10 NVP sing 526 n n C10 C15 NVP doub 527 n y C10 C11 NVP sing 528 n y C15 N14 NVP sing 529 n y C11 C12 NVP doub 530 n y C11 H11 NVP sing 531 n n C12 C13 NVP sing 532 n y C12 H12 NVP sing 533 n n C13 N14 NVP doub 534 n y C13 H13 NVP sing 535 n n # _atom_sites.entry_id 4B3Q _atom_sites.fract_transf_matrix[1][1] 0.003667 _atom_sites.fract_transf_matrix[1][2] 0.002117 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004234 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00429 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 5 _pdbx_nonpoly_scheme.mon_id NVP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 999 _pdbx_nonpoly_scheme.auth_seq_num 999 _pdbx_nonpoly_scheme.pdb_mon_id NVP _pdbx_nonpoly_scheme.auth_mon_id NVP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NVP . . . E 5 54.098 15.548 24.24 1 136.65 ? N1 NVP 999 A 1 HETATM 2 C CA NVP . . . E 5 52.081 14.388 25.336 1 144.68 ? CA NVP 999 A 1 HETATM 3 C CB NVP . . . E 5 53.539 14.375 25.008 1 148.11 ? CB NVP 999 A 1 HETATM 4 C CC NVP . . . E 5 52.601 13.469 24.277 1 151.94 ? CC NVP 999 A 1 HETATM 5 N N3 NVP . . . E 5 52.121 16.274 22.742 1 137.33 ? N3 NVP 999 A 1 HETATM 6 C C4 NVP . . . E 5 51.545 16.892 21.677 1 148.59 ? C4 NVP 999 A 1 HETATM 7 C C5 NVP . . . E 5 52.351 17.598 20.752 1 150.58 ? C5 NVP 999 A 1 HETATM 8 C C6 NVP . . . E 5 53.741 17.672 20.95 1 139.16 ? C6 NVP 999 A 1 HETATM 9 C CD NVP . . . E 5 54.579 18.42 19.962 1 142.43 ? CD NVP 999 A 1 HETATM 10 C C2 NVP . . . E 5 53.469 16.302 22.96 1 133.79 ? C2 NVP 999 A 1 HETATM 11 C C7 NVP . . . E 5 54.319 17.059 22.124 1 131.81 ? C7 NVP 999 A 1 HETATM 12 N N8 NVP . . . E 5 55.539 16.86 22.132 1 137.01 ? N8 NVP 999 A 1 HETATM 13 C C9 NVP . . . E 5 56.434 16.931 23.027 1 151.95 ? C9 NVP 999 A 1 HETATM 14 O OE NVP . . . E 5 57.447 17.15 22.495 1 161.69 ? OE NVP 999 A 1 HETATM 15 C C10 NVP . . . E 5 56.703 16.043 23.949 1 152.48 ? C10 NVP 999 A 1 HETATM 16 C C15 NVP . . . E 5 55.634 15.447 24.756 1 152.64 ? C15 NVP 999 A 1 HETATM 17 C C11 NVP . . . E 5 58.045 15.973 24.43 1 151.89 ? C11 NVP 999 A 1 HETATM 18 C C12 NVP . . . E 5 58.3 15.247 25.625 1 150.37 ? C12 NVP 999 A 1 HETATM 19 C C13 NVP . . . E 5 57.218 14.625 26.345 1 157.16 ? C13 NVP 999 A 1 HETATM 20 N N14 NVP . . . E 5 55.932 14.757 25.885 1 159.53 ? N14 NVP 999 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 508 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 20 #