data_4B48 # _model_server_result.job_id jnUQVrXM9XiWj6x0Anb2dg _model_server_result.datetime_utc '2024-10-12 12:20:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4b48 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1355}' # _entry.id 4B48 # _exptl.entry_id 4B48 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4B48 _cell.length_a 45.02 _cell.length_b 61.95 _cell.length_c 160.42 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4B48 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O1G GTP . A GTP 1355 1_555 C MG MG . A MG 1356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc2 B O1B GTP . A GTP 1355 1_555 C MG MG . A MG 1356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 116 n n PG O2G GTP sing 117 n n PG O3G GTP sing 118 n n PG O3B GTP sing 119 n n O2G HOG2 GTP sing 120 n n O3G HOG3 GTP sing 121 n n O3B PB GTP sing 122 n n PB O1B GTP doub 123 n n PB O2B GTP sing 124 n n PB O3A GTP sing 125 n n O2B HOB2 GTP sing 126 n n O3A PA GTP sing 127 n n PA O1A GTP doub 128 n n PA O2A GTP sing 129 n n PA O5' GTP sing 130 n n O2A HOA2 GTP sing 131 n n O5' C5' GTP sing 132 n n C5' C4' GTP sing 133 n n C5' H5' GTP sing 134 n n C5' "H5''" GTP sing 135 n n C4' O4' GTP sing 136 n n C4' C3' GTP sing 137 n n C4' H4' GTP sing 138 n n O4' C1' GTP sing 139 n n C3' O3' GTP sing 140 n n C3' C2' GTP sing 141 n n C3' H3' GTP sing 142 n n O3' HO3' GTP sing 143 n n C2' O2' GTP sing 144 n n C2' C1' GTP sing 145 n n C2' H2' GTP sing 146 n n O2' HO2' GTP sing 147 n n C1' N9 GTP sing 148 n n C1' H1' GTP sing 149 n n N9 C8 GTP sing 150 n y N9 C4 GTP sing 151 n y C8 N7 GTP doub 152 n y C8 H8 GTP sing 153 n n N7 C5 GTP sing 154 n y C5 C6 GTP sing 155 n n C5 C4 GTP doub 156 n y C6 O6 GTP doub 157 n n C6 N1 GTP sing 158 n n N1 C2 GTP sing 159 n n N1 HN1 GTP sing 160 n n C2 N2 GTP sing 161 n n C2 N3 GTP doub 162 n n N2 HN21 GTP sing 163 n n N2 HN22 GTP sing 164 n n N3 C4 GTP sing 165 n n # _atom_sites.entry_id 4B48 _atom_sites.fract_transf_matrix[1][1] 0.022212 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016142 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GTP A 1 1355 1355 GTP GTP . C 3 MG A 1 1356 1356 MG MG . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . B 2 15.979 8.204 42.412 0.68 112.9 ? PG GTP 1355 A 1 HETATM 2 O O1G GTP . . . B 2 16.267 7.594 41.062 0.68 109.75 ? O1G GTP 1355 A 1 HETATM 3 O O2G GTP . . . B 2 15.745 7.097 43.407 0.68 109.57 ? O2G GTP 1355 A 1 HETATM 4 O O3G GTP . . . B 2 17.145 9.058 42.848 0.68 105.21 ? O3G GTP 1355 A 1 HETATM 5 O O3B GTP . . . B 2 14.657 9.108 42.271 1 103.29 ? O3B GTP 1355 A 1 HETATM 6 P PB GTP . . . B 2 13.223 8.395 42.363 1 107.74 ? PB GTP 1355 A 1 HETATM 7 O O1B GTP . . . B 2 12.969 7.549 41.141 1 109.89 ? O1B GTP 1355 A 1 HETATM 8 O O2B GTP . . . B 2 13.114 7.565 43.614 1 112.16 ? O2B GTP 1355 A 1 HETATM 9 O O3A GTP . . . B 2 12.165 9.59 42.491 1 102.48 ? O3A GTP 1355 A 1 HETATM 10 P PA GTP . . . B 2 10.637 9.171 42.733 1 105.83 ? PA GTP 1355 A 1 HETATM 11 O O1A GTP . . . B 2 10.353 7.863 42.043 1 97.52 ? O1A GTP 1355 A 1 HETATM 12 O O2A GTP . . . B 2 9.689 10.246 42.274 1 100.3 ? O2A GTP 1355 A 1 HETATM 13 O O5' GTP . . . B 2 10.579 8.959 44.325 1 111.54 ? O5' GTP 1355 A 1 HETATM 14 C C5' GTP . . . B 2 10.087 7.754 44.864 1 109.94 ? C5' GTP 1355 A 1 HETATM 15 C C4' GTP . . . B 2 8.801 8.022 45.63 1 105 ? C4' GTP 1355 A 1 HETATM 16 O O4' GTP . . . B 2 8.704 9.397 45.94 1 105.42 ? O4' GTP 1355 A 1 HETATM 17 C C3' GTP . . . B 2 7.574 7.669 44.809 1 103.46 ? C3' GTP 1355 A 1 HETATM 18 O O3' GTP . . . B 2 6.789 6.754 45.531 1 100.62 ? O3' GTP 1355 A 1 HETATM 19 C C2' GTP . . . B 2 6.802 8.96 44.684 1 99.14 ? C2' GTP 1355 A 1 HETATM 20 O O2' GTP . . . B 2 5.424 8.732 44.844 1 97.49 ? O2' GTP 1355 A 1 HETATM 21 C C1' GTP . . . B 2 7.358 9.8 45.818 1 104.57 ? C1' GTP 1355 A 1 HETATM 22 N N9 GTP . . . B 2 7.263 11.231 45.5 1 107.86 ? N9 GTP 1355 A 1 HETATM 23 C C8 GTP . . . B 2 7.885 11.887 44.476 1 106.64 ? C8 GTP 1355 A 1 HETATM 24 N N7 GTP . . . B 2 7.539 13.192 44.534 1 105.52 ? N7 GTP 1355 A 1 HETATM 25 C C5 GTP . . . B 2 6.709 13.376 45.583 1 107.23 ? C5 GTP 1355 A 1 HETATM 26 C C6 GTP . . . B 2 6.07 14.5 46.086 1 109.65 ? C6 GTP 1355 A 1 HETATM 27 O O6 GTP . . . B 2 6.225 15.593 45.544 1 106.75 ? O6 GTP 1355 A 1 HETATM 28 N N1 GTP . . . B 2 5.263 14.381 47.199 1 112.47 ? N1 GTP 1355 A 1 HETATM 29 C C2 GTP . . . B 2 5.096 13.15 47.8 1 114.68 ? C2 GTP 1355 A 1 HETATM 30 N N2 GTP . . . B 2 4.318 13.033 48.87 1 118.59 ? N2 GTP 1355 A 1 HETATM 31 N N3 GTP . . . B 2 5.735 12.039 47.291 1 109.92 ? N3 GTP 1355 A 1 HETATM 32 C C4 GTP . . . B 2 6.529 12.15 46.2 1 108.53 ? C4 GTP 1355 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #