data_4B67
#
_model_server_result.job_id            8HPKUzICCByoNTXcSL2pjg 
_model_server_result.datetime_utc      '2024-10-17 01:43:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4b67 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1492}' 
#
_entry.id    4B67 
#
_exptl.entry_id    4B67 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4B67 
_cell.length_a            77.17 
_cell.length_b            84.04 
_cell.length_c            144.72 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4B67 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -84.04 0 
3 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -77.17 -84.04 0 
4 'crystal symmetry operation' 3_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -77.17 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     4B67 
_atom_sites.fract_transf_matrix[1][1]    0.012958 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011899 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00691 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 1492 1492 FAD FAD . 
C 3 NAP A 1 1493 1493 NAP NAP . 
D 4 ORN A 1 1494 1494 ORN ORN . 
E 5 SO4 A 1 1495 1495 SO4 SO4 . 
F 5 SO4 A 1 1496 1496 SO4 SO4 . 
G 4 ORN A 1 1497 1497 ORN ORN . 
H 6 GOL A 1 1498 1498 GOL GOL . 
I 4 ORN A 1 1499 1499 ORN ORN . 
J 7 HOH A 1 2001 2001 HOH HOH . 
J 7 HOH A 2 2002 2002 HOH HOH . 
J 7 HOH A 3 2003 2003 HOH HOH . 
J 7 HOH A 4 2004 2004 HOH HOH . 
J 7 HOH A 5 2005 2005 HOH HOH . 
J 7 HOH A 6 2006 2006 HOH HOH . 
J 7 HOH A 7 2007 2007 HOH HOH . 
J 7 HOH A 8 2008 2008 HOH HOH . 
J 7 HOH A 9 2009 2009 HOH HOH . 
J 7 HOH A 10 2010 2010 HOH HOH . 
J 7 HOH A 11 2011 2011 HOH HOH . 
J 7 HOH A 12 2012 2012 HOH HOH . 
J 7 HOH A 13 2013 2013 HOH HOH . 
J 7 HOH A 14 2014 2014 HOH HOH . 
J 7 HOH A 15 2015 2015 HOH HOH . 
J 7 HOH A 16 2016 2016 HOH HOH . 
J 7 HOH A 17 2017 2017 HOH HOH . 
J 7 HOH A 18 2018 2018 HOH HOH . 
J 7 HOH A 19 2019 2019 HOH HOH . 
J 7 HOH A 20 2020 2020 HOH HOH . 
J 7 HOH A 21 2021 2021 HOH HOH . 
J 7 HOH A 22 2022 2022 HOH HOH . 
J 7 HOH A 23 2023 2023 HOH HOH . 
J 7 HOH A 24 2024 2024 HOH HOH . 
J 7 HOH A 25 2025 2025 HOH HOH . 
J 7 HOH A 26 2026 2026 HOH HOH . 
J 7 HOH A 27 2027 2027 HOH HOH . 
J 7 HOH A 28 2028 2028 HOH HOH . 
J 7 HOH A 29 2029 2029 HOH HOH . 
J 7 HOH A 30 2030 2030 HOH HOH . 
J 7 HOH A 31 2031 2031 HOH HOH . 
J 7 HOH A 32 2032 2032 HOH HOH . 
J 7 HOH A 33 2033 2033 HOH HOH . 
J 7 HOH A 34 2034 2034 HOH HOH . 
J 7 HOH A 35 2035 2035 HOH HOH . 
J 7 HOH A 36 2036 2036 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . B 2 -20.026 -26.498 21.543 1 26.05 ? PA FAD 1492 A 1 
HETATM 2 O O1A FAD . . . B 2 -21.404 -26.833 21.018 1 25.91 ? O1A FAD 1492 A 1 
HETATM 3 O O2A FAD . . . B 2 -19.181 -25.512 20.761 1 25.38 ? O2A FAD 1492 A 1 
HETATM 4 O O5B FAD . . . B 2 -20.169 -25.95 23.048 1 24.91 ? O5B FAD 1492 A 1 
HETATM 5 C C5B FAD . . . B 2 -19.078 -25.256 23.653 1 25.17 ? C5B FAD 1492 A 1 
HETATM 6 C C4B FAD . . . B 2 -19.563 -24.068 24.479 1 25.62 ? C4B FAD 1492 A 1 
HETATM 7 O O4B FAD . . . B 2 -18.502 -23.547 25.28 1 25.07 ? O4B FAD 1492 A 1 
HETATM 8 C C3B FAD . . . B 2 -20.059 -22.929 23.609 1 25.99 ? C3B FAD 1492 A 1 
HETATM 9 O O3B FAD . . . B 2 -21.353 -22.546 24.084 1 26.43 ? O3B FAD 1492 A 1 
HETATM 10 C C2B FAD . . . B 2 -19.077 -21.793 23.815 1 26.09 ? C2B FAD 1492 A 1 
HETATM 11 O O2B FAD . . . B 2 -19.733 -20.519 23.867 1 26.53 ? O2B FAD 1492 A 1 
HETATM 12 C C1B FAD . . . B 2 -18.425 -22.127 25.147 1 25.67 ? C1B FAD 1492 A 1 
HETATM 13 N N9A FAD . . . B 2 -17.005 -21.685 25.223 1 25.94 ? N9A FAD 1492 A 1 
HETATM 14 C C8A FAD . . . B 2 -16.095 -21.717 24.227 1 25.53 ? C8A FAD 1492 A 1 
HETATM 15 N N7A FAD . . . B 2 -14.897 -21.243 24.654 1 25.87 ? N7A FAD 1492 A 1 
HETATM 16 C C5A FAD . . . B 2 -15.029 -20.896 25.951 1 25.62 ? C5A FAD 1492 A 1 
HETATM 17 C C6A FAD . . . B 2 -14.154 -20.33 27.01 1 25.74 ? C6A FAD 1492 A 1 
HETATM 18 N N6A FAD . . . B 2 -12.856 -20.031 26.754 1 25.92 ? N6A FAD 1492 A 1 
HETATM 19 N N1A FAD . . . B 2 -14.692 -20.122 28.238 1 25.71 ? N1A FAD 1492 A 1 
HETATM 20 C C2A FAD . . . B 2 -15.981 -20.417 28.512 1 25.83 ? C2A FAD 1492 A 1 
HETATM 21 N N3A FAD . . . B 2 -16.828 -20.931 27.596 1 25.8 ? N3A FAD 1492 A 1 
HETATM 22 C C4A FAD . . . B 2 -16.422 -21.19 26.323 1 25.74 ? C4A FAD 1492 A 1 
HETATM 23 N N1 FAD . . . B 2 -23.593 -32.745 15.486 1 26.52 ? N1 FAD 1492 A 1 
HETATM 24 C C2 FAD . . . B 2 -24.641 -33.603 15.664 1 26.51 ? C2 FAD 1492 A 1 
HETATM 25 O O2 FAD . . . B 2 -24.453 -34.687 16.261 1 26.42 ? O2 FAD 1492 A 1 
HETATM 26 N N3 FAD . . . B 2 -25.883 -33.328 15.211 1 26.36 ? N3 FAD 1492 A 1 
HETATM 27 C C4 FAD . . . B 2 -26.121 -32.248 14.454 1 26.6 ? C4 FAD 1492 A 1 
HETATM 28 O O4 FAD . . . B 2 -27.093 -32.199 13.668 1 25.74 ? O4 FAD 1492 A 1 
HETATM 29 C C4X FAD . . . B 2 -25.144 -31.134 14.531 1 26.97 ? C4X FAD 1492 A 1 
HETATM 30 N N5 FAD . . . B 2 -25.443 -29.884 14.12 1 27.24 ? N5 FAD 1492 A 1 
HETATM 31 C C5X FAD . . . B 2 -24.473 -28.953 14.003 1 27.35 ? C5X FAD 1492 A 1 
HETATM 32 C C6 FAD . . . B 2 -24.762 -27.748 13.372 1 27.64 ? C6 FAD 1492 A 1 
HETATM 33 C C7 FAD . . . B 2 -23.774 -26.777 13.231 1 27.54 ? C7 FAD 1492 A 1 
HETATM 34 C C7M FAD . . . B 2 -24.127 -25.49 12.535 1 27.05 ? C7M FAD 1492 A 1 
HETATM 35 C C8 FAD . . . B 2 -22.4 -27.025 13.772 1 27.01 ? C8 FAD 1492 A 1 
HETATM 36 C C8M FAD . . . B 2 -21.304 -26.002 13.65 1 26.06 ? C8M FAD 1492 A 1 
HETATM 37 C C9 FAD . . . B 2 -22.117 -28.23 14.405 1 27.13 ? C9 FAD 1492 A 1 
HETATM 38 C C9A FAD . . . B 2 -23.102 -29.209 14.546 1 27.17 ? C9A FAD 1492 A 1 
HETATM 39 N N10 FAD . . . B 2 -22.832 -30.446 15.189 1 27.03 ? N10 FAD 1492 A 1 
HETATM 40 C C10 FAD . . . B 2 -23.808 -31.467 15.089 1 26.84 ? C10 FAD 1492 A 1 
HETATM 41 C C1' FAD . . . B 2 -21.502 -30.737 15.741 1 26.54 ? C1' FAD 1492 A 1 
HETATM 42 C C2' FAD . . . B 2 -21.387 -30.052 17.096 1 26.5 ? C2' FAD 1492 A 1 
HETATM 43 O O2' FAD . . . B 2 -20.036 -29.602 17.29 1 26.66 ? O2' FAD 1492 A 1 
HETATM 44 C C3' FAD . . . B 2 -21.805 -30.987 18.23 1 26.14 ? C3' FAD 1492 A 1 
HETATM 45 O O3' FAD . . . B 2 -22.995 -31.714 17.898 1 27.17 ? O3' FAD 1492 A 1 
HETATM 46 C C4' FAD . . . B 2 -22.041 -30.26 19.546 1 25.4 ? C4' FAD 1492 A 1 
HETATM 47 O O4' FAD . . . B 2 -22.384 -28.889 19.322 1 25.33 ? O4' FAD 1492 A 1 
HETATM 48 C C5' FAD . . . B 2 -20.783 -30.349 20.39 1 25.22 ? C5' FAD 1492 A 1 
HETATM 49 O O5' FAD . . . B 2 -20.995 -29.662 21.61 1 24.7 ? O5' FAD 1492 A 1 
HETATM 50 P P FAD . . . B 2 -19.731 -29.193 22.478 1 25.75 ? P FAD 1492 A 1 
HETATM 51 O O1P FAD . . . B 2 -18.654 -30.251 22.382 1 25.42 ? O1P FAD 1492 A 1 
HETATM 52 O O2P FAD . . . B 2 -20.267 -28.793 23.833 1 25.35 ? O2P FAD 1492 A 1 
HETATM 53 O O3P FAD . . . B 2 -19.191 -27.878 21.699 1 25.52 ? O3P FAD 1492 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           53 
#