data_4B67 # _model_server_result.job_id l7f7s8MLZouhln6X4obmSw _model_server_result.datetime_utc '2024-10-17 01:38:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4b67 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1493}' # _entry.id 4B67 # _exptl.entry_id 4B67 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4B67 _cell.length_a 77.17 _cell.length_b 84.04 _cell.length_c 144.72 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4B67 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -84.04 0 3 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -77.17 -84.04 0 4 'crystal symmetry operation' 3_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -77.17 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 341 n n PA O2A NAP sing 342 n n PA O5B NAP sing 343 n n PA O3 NAP sing 344 n n O2A HOA2 NAP sing 345 n n O5B C5B NAP sing 346 n n C5B C4B NAP sing 347 n n C5B H51A NAP sing 348 n n C5B H52A NAP sing 349 n n C4B O4B NAP sing 350 n n C4B C3B NAP sing 351 n n C4B H4B NAP sing 352 n n O4B C1B NAP sing 353 n n C3B O3B NAP sing 354 n n C3B C2B NAP sing 355 n n C3B H3B NAP sing 356 n n O3B HO3A NAP sing 357 n n C2B O2B NAP sing 358 n n C2B C1B NAP sing 359 n n C2B H2B NAP sing 360 n n O2B P2B NAP sing 361 n n C1B N9A NAP sing 362 n n C1B H1B NAP sing 363 n n N9A C8A NAP sing 364 n y N9A C4A NAP sing 365 n y C8A N7A NAP doub 366 n y C8A H8A NAP sing 367 n n N7A C5A NAP sing 368 n y C5A C6A NAP sing 369 n y C5A C4A NAP doub 370 n y C6A N6A NAP sing 371 n n C6A N1A NAP doub 372 n y N6A H61A NAP sing 373 n n N6A H62A NAP sing 374 n n N1A C2A NAP sing 375 n y C2A N3A NAP doub 376 n y C2A H2A NAP sing 377 n n N3A C4A NAP sing 378 n y O3 PN NAP sing 379 n n PN O1N NAP doub 380 n n PN O2N NAP sing 381 n n PN O5D NAP sing 382 n n O5D C5D NAP sing 383 n n C5D C4D NAP sing 384 n n C5D H51N NAP sing 385 n n C5D H52N NAP sing 386 n n C4D O4D NAP sing 387 n n C4D C3D NAP sing 388 n n C4D H4D NAP sing 389 n n O4D C1D NAP sing 390 n n C3D O3D NAP sing 391 n n C3D C2D NAP sing 392 n n C3D H3D NAP sing 393 n n O3D HO3N NAP sing 394 n n C2D O2D NAP sing 395 n n C2D C1D NAP sing 396 n n C2D H2D NAP sing 397 n n O2D HO2N NAP sing 398 n n C1D N1N NAP sing 399 n n C1D H1D NAP sing 400 n n N1N C2N NAP sing 401 n y N1N C6N NAP doub 402 n y C2N C3N NAP doub 403 n y C2N H2N NAP sing 404 n n C3N C7N NAP sing 405 n n C3N C4N NAP sing 406 n y C7N O7N NAP doub 407 n n C7N N7N NAP sing 408 n n N7N H71N NAP sing 409 n n N7N H72N NAP sing 410 n n C4N C5N NAP doub 411 n y C4N H4N NAP sing 412 n n C5N C6N NAP sing 413 n y C5N H5N NAP sing 414 n n C6N H6N NAP sing 415 n n P2B O1X NAP doub 416 n n P2B O2X NAP sing 417 n n P2B O3X NAP sing 418 n n O2X HOP2 NAP sing 419 n n O3X HOP3 NAP sing 420 n n # _atom_sites.entry_id 4B67 _atom_sites.fract_transf_matrix[1][1] 0.012958 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011899 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00691 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 1492 1492 FAD FAD . C 3 NAP A 1 1493 1493 NAP NAP . D 4 ORN A 1 1494 1494 ORN ORN . E 5 SO4 A 1 1495 1495 SO4 SO4 . F 5 SO4 A 1 1496 1496 SO4 SO4 . G 4 ORN A 1 1497 1497 ORN ORN . H 6 GOL A 1 1498 1498 GOL GOL . I 4 ORN A 1 1499 1499 ORN ORN . J 7 HOH A 1 2001 2001 HOH HOH . J 7 HOH A 2 2002 2002 HOH HOH . J 7 HOH A 3 2003 2003 HOH HOH . J 7 HOH A 4 2004 2004 HOH HOH . J 7 HOH A 5 2005 2005 HOH HOH . J 7 HOH A 6 2006 2006 HOH HOH . J 7 HOH A 7 2007 2007 HOH HOH . J 7 HOH A 8 2008 2008 HOH HOH . J 7 HOH A 9 2009 2009 HOH HOH . J 7 HOH A 10 2010 2010 HOH HOH . J 7 HOH A 11 2011 2011 HOH HOH . J 7 HOH A 12 2012 2012 HOH HOH . J 7 HOH A 13 2013 2013 HOH HOH . J 7 HOH A 14 2014 2014 HOH HOH . J 7 HOH A 15 2015 2015 HOH HOH . J 7 HOH A 16 2016 2016 HOH HOH . J 7 HOH A 17 2017 2017 HOH HOH . J 7 HOH A 18 2018 2018 HOH HOH . J 7 HOH A 19 2019 2019 HOH HOH . J 7 HOH A 20 2020 2020 HOH HOH . J 7 HOH A 21 2021 2021 HOH HOH . J 7 HOH A 22 2022 2022 HOH HOH . J 7 HOH A 23 2023 2023 HOH HOH . J 7 HOH A 24 2024 2024 HOH HOH . J 7 HOH A 25 2025 2025 HOH HOH . J 7 HOH A 26 2026 2026 HOH HOH . J 7 HOH A 27 2027 2027 HOH HOH . J 7 HOH A 28 2028 2028 HOH HOH . J 7 HOH A 29 2029 2029 HOH HOH . J 7 HOH A 30 2030 2030 HOH HOH . J 7 HOH A 31 2031 2031 HOH HOH . J 7 HOH A 32 2032 2032 HOH HOH . J 7 HOH A 33 2033 2033 HOH HOH . J 7 HOH A 34 2034 2034 HOH HOH . J 7 HOH A 35 2035 2035 HOH HOH . J 7 HOH A 36 2036 2036 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 -16.468 -29.226 7.072 1 27.57 ? PA NAP 1493 A 1 HETATM 2 O O1A NAP . . . C 3 -17.416 -30.404 7.072 1 27.29 ? O1A NAP 1493 A 1 HETATM 3 O O2A NAP . . . C 3 -15.121 -29.347 7.741 1 27.68 ? O2A NAP 1493 A 1 HETATM 4 O O5B NAP . . . C 3 -16.23 -28.796 5.54 1 27.18 ? O5B NAP 1493 A 1 HETATM 5 C C5B NAP . . . C 3 -15.557 -27.581 5.222 1 27.21 ? C5B NAP 1493 A 1 HETATM 6 C C4B NAP . . . C 3 -15.387 -27.429 3.712 1 27.33 ? C4B NAP 1493 A 1 HETATM 7 O O4B NAP . . . C 3 -14.495 -26.336 3.458 1 27.59 ? O4B NAP 1493 A 1 HETATM 8 C C3B NAP . . . C 3 -14.784 -28.657 3.041 1 27.62 ? C3B NAP 1493 A 1 HETATM 9 O O3B NAP . . . C 3 -15.518 -28.953 1.847 1 27.51 ? O3B NAP 1493 A 1 HETATM 10 C C2B NAP . . . C 3 -13.356 -28.257 2.708 1 28.23 ? C2B NAP 1493 A 1 HETATM 11 O O2B NAP . . . C 3 -12.857 -28.8 1.483 1 28.85 ? O2B NAP 1493 A 1 HETATM 12 C C1B NAP . . . C 3 -13.419 -26.743 2.611 1 27.94 ? C1B NAP 1493 A 1 HETATM 13 N N9A NAP . . . C 3 -12.111 -26.185 3.028 1 27.53 ? N9A NAP 1493 A 1 HETATM 14 C C8A NAP . . . C 3 -11.511 -26.345 4.224 1 27.38 ? C8A NAP 1493 A 1 HETATM 15 N N7A NAP . . . C 3 -10.312 -25.711 4.254 1 27.58 ? N7A NAP 1493 A 1 HETATM 16 C C5A NAP . . . C 3 -10.133 -25.132 3.048 1 27.64 ? C5A NAP 1493 A 1 HETATM 17 C C6A NAP . . . C 3 -9.086 -24.301 2.395 1 27.58 ? C6A NAP 1493 A 1 HETATM 18 N N6A NAP . . . C 3 -7.956 -23.956 3.057 1 27.77 ? N6A NAP 1493 A 1 HETATM 19 N N1A NAP . . . C 3 -9.295 -23.906 1.114 1 27.7 ? N1A NAP 1493 A 1 HETATM 20 C C2A NAP . . . C 3 -10.417 -24.24 0.44 1 27.53 ? C2A NAP 1493 A 1 HETATM 21 N N3A NAP . . . C 3 -11.409 -24.987 0.97 1 27.6 ? N3A NAP 1493 A 1 HETATM 22 C C4A NAP . . . C 3 -11.324 -25.453 2.243 1 27.36 ? C4A NAP 1493 A 1 HETATM 23 O O3 NAP . . . C 3 -17.188 -27.934 7.713 1 27.58 ? O3 NAP 1493 A 1 HETATM 24 P PN NAP . . . C 3 -18.765 -27.851 8.037 1 27.76 ? PN NAP 1493 A 1 HETATM 25 O O1N NAP . . . C 3 -19.503 -27.924 6.72 1 26.98 ? O1N NAP 1493 A 1 HETATM 26 O O2N NAP . . . C 3 -18.966 -26.666 8.95 1 27.34 ? O2N NAP 1493 A 1 HETATM 27 O O5D NAP . . . C 3 -19.058 -29.17 8.92 1 27.77 ? O5D NAP 1493 A 1 HETATM 28 C C5D NAP . . . C 3 -18.598 -29.268 10.272 1 28.6 ? C5D NAP 1493 A 1 HETATM 29 C C4D NAP . . . C 3 -19.593 -30 11.178 1 29.08 ? C4D NAP 1493 A 1 HETATM 30 O O4D NAP . . . C 3 -20.762 -29.205 11.425 1 29.38 ? O4D NAP 1493 A 1 HETATM 31 C C3D NAP . . . C 3 -20.076 -31.313 10.583 1 29.47 ? C3D NAP 1493 A 1 HETATM 32 O O3D NAP . . . C 3 -20.073 -32.293 11.625 1 29.17 ? O3D NAP 1493 A 1 HETATM 33 C C2D NAP . . . C 3 -21.497 -31.032 10.12 1 29.57 ? C2D NAP 1493 A 1 HETATM 34 O O2D NAP . . . C 3 -22.347 -32.18 10.221 1 30.23 ? O2D NAP 1493 A 1 HETATM 35 C C1D NAP . . . C 3 -21.945 -29.934 11.072 1 29.27 ? C1D NAP 1493 A 1 HETATM 36 N N1N NAP . . . C 3 -23.002 -29.082 10.507 1 29.17 ? N1N NAP 1493 A 1 HETATM 37 C C2N NAP . . . C 3 -24.278 -29.424 10.761 1 28.68 ? C2N NAP 1493 A 1 HETATM 38 C C3N NAP . . . C 3 -25.345 -28.671 10.275 1 28.02 ? C3N NAP 1493 A 1 HETATM 39 C C7N NAP . . . C 3 -26.754 -29.095 10.596 1 27.61 ? C7N NAP 1493 A 1 HETATM 40 O O7N NAP . . . C 3 -26.985 -29.591 11.687 1 27.53 ? O7N NAP 1493 A 1 HETATM 41 N N7N NAP . . . C 3 -27.726 -28.922 9.703 1 27.01 ? N7N NAP 1493 A 1 HETATM 42 C C4N NAP . . . C 3 -25.076 -27.534 9.509 1 27.52 ? C4N NAP 1493 A 1 HETATM 43 C C5N NAP . . . C 3 -23.749 -27.191 9.252 1 28.01 ? C5N NAP 1493 A 1 HETATM 44 C C6N NAP . . . C 3 -22.719 -27.988 9.769 1 29.08 ? C6N NAP 1493 A 1 HETATM 45 P P2B NAP . . . C 3 -12.263 -30.295 1.372 1 29.28 ? P2B NAP 1493 A 1 HETATM 46 O O1X NAP . . . C 3 -10.82 -30.111 0.962 1 28.85 ? O1X NAP 1493 A 1 HETATM 47 O O2X NAP . . . C 3 -12.404 -30.902 2.748 1 28.17 ? O2X NAP 1493 A 1 HETATM 48 O O3X NAP . . . C 3 -13.131 -30.895 0.291 1 28.6 ? O3X NAP 1493 A 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #