data_4B67 # _model_server_result.job_id 0AThPUvW128u4AAcM-LEvg _model_server_result.datetime_utc '2024-10-17 01:44:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4b67 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1494}' # _entry.id 4B67 # _exptl.entry_id 4B67 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 132.161 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-ornithine _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4B67 _cell.length_a 77.17 _cell.length_b 84.04 _cell.length_c 144.72 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4B67 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -84.04 0 3 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -77.17 -84.04 0 4 'crystal symmetry operation' 3_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -77.17 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 G N N ? 4 I N N # _chem_comp.formula 'C5 H12 N2 O2' _chem_comp.formula_weight 132.161 _chem_comp.id ORN _chem_comp.mon_nstd_flag n _chem_comp.name L-ornithine _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ORN sing 421 n n N H ORN sing 422 n n N H2 ORN sing 423 n n CA CB ORN sing 424 n n CA C ORN sing 425 n n CA HA ORN sing 426 n n CB CG ORN sing 427 n n CB HB2 ORN sing 428 n n CB HB3 ORN sing 429 n n CG CD ORN sing 430 n n CG HG2 ORN sing 431 n n CG HG3 ORN sing 432 n n CD NE ORN sing 433 n n CD HD2 ORN sing 434 n n CD HD3 ORN sing 435 n n NE HE1 ORN sing 436 n n NE HE2 ORN sing 437 n n C O ORN doub 438 n n C OXT ORN sing 439 n n OXT HXT ORN sing 440 n n # _atom_sites.entry_id 4B67 _atom_sites.fract_transf_matrix[1][1] 0.012958 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011899 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00691 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 1492 1492 FAD FAD . C 3 NAP A 1 1493 1493 NAP NAP . D 4 ORN A 1 1494 1494 ORN ORN . E 5 SO4 A 1 1495 1495 SO4 SO4 . F 5 SO4 A 1 1496 1496 SO4 SO4 . G 4 ORN A 1 1497 1497 ORN ORN . H 6 GOL A 1 1498 1498 GOL GOL . I 4 ORN A 1 1499 1499 ORN ORN . J 7 HOH A 1 2001 2001 HOH HOH . J 7 HOH A 2 2002 2002 HOH HOH . J 7 HOH A 3 2003 2003 HOH HOH . J 7 HOH A 4 2004 2004 HOH HOH . J 7 HOH A 5 2005 2005 HOH HOH . J 7 HOH A 6 2006 2006 HOH HOH . J 7 HOH A 7 2007 2007 HOH HOH . J 7 HOH A 8 2008 2008 HOH HOH . J 7 HOH A 9 2009 2009 HOH HOH . J 7 HOH A 10 2010 2010 HOH HOH . J 7 HOH A 11 2011 2011 HOH HOH . J 7 HOH A 12 2012 2012 HOH HOH . J 7 HOH A 13 2013 2013 HOH HOH . J 7 HOH A 14 2014 2014 HOH HOH . J 7 HOH A 15 2015 2015 HOH HOH . J 7 HOH A 16 2016 2016 HOH HOH . J 7 HOH A 17 2017 2017 HOH HOH . J 7 HOH A 18 2018 2018 HOH HOH . J 7 HOH A 19 2019 2019 HOH HOH . J 7 HOH A 20 2020 2020 HOH HOH . J 7 HOH A 21 2021 2021 HOH HOH . J 7 HOH A 22 2022 2022 HOH HOH . J 7 HOH A 23 2023 2023 HOH HOH . J 7 HOH A 24 2024 2024 HOH HOH . J 7 HOH A 25 2025 2025 HOH HOH . J 7 HOH A 26 2026 2026 HOH HOH . J 7 HOH A 27 2027 2027 HOH HOH . J 7 HOH A 28 2028 2028 HOH HOH . J 7 HOH A 29 2029 2029 HOH HOH . J 7 HOH A 30 2030 2030 HOH HOH . J 7 HOH A 31 2031 2031 HOH HOH . J 7 HOH A 32 2032 2032 HOH HOH . J 7 HOH A 33 2033 2033 HOH HOH . J 7 HOH A 34 2034 2034 HOH HOH . J 7 HOH A 35 2035 2035 HOH HOH . J 7 HOH A 36 2036 2036 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ORN . . . D 4 -24.34 -40.266 11.569 1 19.74 ? N ORN 1494 A 1 HETATM 2 C CA ORN . . . D 4 -24.072 -39.726 12.935 1 20 ? CA ORN 1494 A 1 HETATM 3 C CB ORN . . . D 4 -24.35 -38.224 12.995 1 20.1 ? CB ORN 1494 A 1 HETATM 4 C CG ORN . . . D 4 -23.421 -37.437 12.072 1 20.07 ? CG ORN 1494 A 1 HETATM 5 C CD ORN . . . D 4 -23.494 -35.942 12.362 1 20.19 ? CD ORN 1494 A 1 HETATM 6 N NE ORN . . . D 4 -23.078 -35.167 11.157 1 20.6 ? NE ORN 1494 A 1 HETATM 7 C C ORN . . . D 4 -24.88 -40.454 13.968 1 20.17 ? C ORN 1494 A 1 HETATM 8 O O ORN . . . D 4 -25.901 -41.07 13.654 1 20.35 ? O ORN 1494 A 1 HETATM 9 O OXT ORN . . . D 4 -24.538 -40.465 15.152 1 20.12 ? OXT ORN 1494 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 9 #