data_4B6C # _model_server_result.job_id VMXO2jimi2c2ifFzwfvw7A _model_server_result.datetime_utc '2024-11-16 19:52:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4b6c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1256}' # _entry.id 4B6C # _exptl.entry_id 4B6C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 474.598 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-(3,4-dimethylphenyl)-3-[[4-[3-(4-methylpiperazin-1-yl)propoxy]phenyl]amino]pyrazine-2-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4B6C _cell.length_a 43.455 _cell.length_b 82.251 _cell.length_c 191.941 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4B6C _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 73 A ASP 80 1_555 D NA NA . A NA 1257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc2 A O GLY 74 A GLY 81 1_555 D NA NA . A NA 1257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc3 A OG1 THR 140 A THR 167 1_555 D NA NA . A NA 1257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc4 D NA NA . A NA 1257 1_555 G O HOH . A HOH 2041 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.047 ? metalc ? metalc5 D NA NA . A NA 1257 1_555 G O HOH . A HOH 2042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc6 B O ASP 73 B ASP 80 1_555 F NA NA . B NA 1257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc7 B O GLY 74 B GLY 81 1_555 F NA NA . B NA 1257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? metalc ? metalc8 B O THR 140 B THR 167 1_555 F NA NA . B NA 1257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.037 ? metalc ? metalc9 B OG1 THR 140 B THR 167 1_555 F NA NA . B NA 1257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc10 F NA NA . B NA 1257 1_555 H O HOH . B HOH 2010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc11 F NA NA . B NA 1257 1_555 H O HOH . B HOH 2011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc12 F NA NA . B NA 1257 1_555 H O HOH . B HOH 2043 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc13 F NA NA . B NA 1257 1_555 H O HOH . B HOH 2044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? # _chem_comp.formula 'C27 H34 N6 O2' _chem_comp.formula_weight 474.598 _chem_comp.id B5U _chem_comp.mon_nstd_flag . _chem_comp.name 6-(3,4-dimethylphenyl)-3-[[4-[3-(4-methylpiperazin-1-yl)propoxy]phenyl]amino]pyrazine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 B5U sing 70 n n C2 C3 B5U sing 71 n y C2 C7 B5U doub 72 n y C3 C4 B5U doub 73 n y C4 C5 B5U sing 74 n y C5 C6 B5U doub 75 n y C5 C9 B5U sing 76 n n C6 C7 B5U sing 77 n y C7 C8 B5U sing 78 n n C9 C10 B5U sing 79 n y C9 N14 B5U doub 80 n y C10 N11 B5U doub 81 n y N11 C12 B5U sing 82 n y C12 C13 B5U doub 83 n y C12 N18 B5U sing 84 n n C13 N14 B5U sing 85 n y C13 C15 B5U sing 86 n n C15 O16 B5U doub 87 n n C15 N17 B5U sing 88 n n N18 C19 B5U sing 89 n n C19 C20 B5U sing 90 n y C19 C24 B5U doub 91 n y C20 C21 B5U doub 92 n y C21 C22 B5U sing 93 n y C22 C23 B5U doub 94 n y C22 O25 B5U sing 95 n n C23 C24 B5U sing 96 n y O25 C26 B5U sing 97 n n C26 C27 B5U sing 98 n n C27 C28 B5U sing 99 n n C28 N29 B5U sing 100 n n N29 C30 B5U sing 101 n n N29 C34 B5U sing 102 n n C30 C31 B5U sing 103 n n C31 N32 B5U sing 104 n n N32 C33 B5U sing 105 n n N32 C35 B5U sing 106 n n C33 C34 B5U sing 107 n n C1 H11C B5U sing 108 n n C1 H12C B5U sing 109 n n C1 H13C B5U sing 110 n n C3 H3 B5U sing 111 n n C4 H4 B5U sing 112 n n C6 H6 B5U sing 113 n n C8 H81C B5U sing 114 n n C8 H82C B5U sing 115 n n C8 H83C B5U sing 116 n n C10 H10 B5U sing 117 n n N18 H18 B5U sing 118 n n N17 H171 B5U sing 119 n n N17 H172 B5U sing 120 n n C20 H20 B5U sing 121 n n C24 H24 B5U sing 122 n n C21 H21 B5U sing 123 n n C23 H23 B5U sing 124 n n C26 H261 B5U sing 125 n n C26 H262 B5U sing 126 n n C27 H271 B5U sing 127 n n C27 H272 B5U sing 128 n n C28 H281 B5U sing 129 n n C28 H282 B5U sing 130 n n C30 H301 B5U sing 131 n n C30 H302 B5U sing 132 n n C34 H341 B5U sing 133 n n C34 H342 B5U sing 134 n n C31 H311 B5U sing 135 n n C31 H312 B5U sing 136 n n C33 H331 B5U sing 137 n n C33 H332 B5U sing 138 n n C35 H351 B5U sing 139 n n C35 H352 B5U sing 140 n n C35 H353 B5U sing 141 n n # _atom_sites.entry_id 4B6C _atom_sites.fract_transf_matrix[1][1] 0.023012 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00521 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 B5U A 1 1256 1256 B5U B5U . D 3 NA A 1 1257 1257 NA NA . E 2 B5U B 1 1256 1256 B5U B5U . F 3 NA B 1 1257 1257 NA NA . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . G 4 HOH A 14 2014 2014 HOH HOH . G 4 HOH A 15 2015 2015 HOH HOH . G 4 HOH A 16 2016 2016 HOH HOH . G 4 HOH A 17 2017 2017 HOH HOH . G 4 HOH A 18 2018 2018 HOH HOH . G 4 HOH A 19 2019 2019 HOH HOH . G 4 HOH A 20 2020 2020 HOH HOH . G 4 HOH A 21 2021 2021 HOH HOH . G 4 HOH A 22 2022 2022 HOH HOH . G 4 HOH A 23 2023 2023 HOH HOH . G 4 HOH A 24 2024 2024 HOH HOH . G 4 HOH A 25 2025 2025 HOH HOH . G 4 HOH A 26 2026 2026 HOH HOH . G 4 HOH A 27 2027 2027 HOH HOH . G 4 HOH A 28 2028 2028 HOH HOH . G 4 HOH A 29 2029 2029 HOH HOH . G 4 HOH A 30 2030 2030 HOH HOH . G 4 HOH A 31 2031 2031 HOH HOH . G 4 HOH A 32 2032 2032 HOH HOH . G 4 HOH A 33 2033 2033 HOH HOH . G 4 HOH A 34 2034 2034 HOH HOH . G 4 HOH A 35 2035 2035 HOH HOH . G 4 HOH A 36 2036 2036 HOH HOH . G 4 HOH A 37 2037 2037 HOH HOH . G 4 HOH A 38 2038 2038 HOH HOH . G 4 HOH A 39 2039 2039 HOH HOH . G 4 HOH A 40 2040 2040 HOH HOH . G 4 HOH A 41 2041 2041 HOH HOH . G 4 HOH A 42 2042 2042 HOH HOH . G 4 HOH A 43 2043 2043 HOH HOH . G 4 HOH A 44 2044 2044 HOH HOH . G 4 HOH A 45 2045 2045 HOH HOH . G 4 HOH A 46 2046 2046 HOH HOH . G 4 HOH A 47 2047 2047 HOH HOH . G 4 HOH A 48 2048 2048 HOH HOH . G 4 HOH A 49 2049 2049 HOH HOH . G 4 HOH A 50 2050 2050 HOH HOH . G 4 HOH A 51 2051 2051 HOH HOH . G 4 HOH A 52 2052 2052 HOH HOH . G 4 HOH A 53 2053 2053 HOH HOH . G 4 HOH A 54 2054 2054 HOH HOH . G 4 HOH A 55 2055 2055 HOH HOH . G 4 HOH A 56 2056 2056 HOH HOH . G 4 HOH A 57 2057 2057 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . H 4 HOH B 4 2004 2004 HOH HOH . H 4 HOH B 5 2005 2005 HOH HOH . H 4 HOH B 6 2006 2006 HOH HOH . H 4 HOH B 7 2007 2007 HOH HOH . H 4 HOH B 8 2008 2008 HOH HOH . H 4 HOH B 9 2009 2009 HOH HOH . H 4 HOH B 10 2010 2010 HOH HOH . H 4 HOH B 11 2011 2011 HOH HOH . H 4 HOH B 12 2012 2012 HOH HOH . H 4 HOH B 13 2013 2013 HOH HOH . H 4 HOH B 14 2014 2014 HOH HOH . H 4 HOH B 15 2015 2015 HOH HOH . H 4 HOH B 16 2016 2016 HOH HOH . H 4 HOH B 17 2017 2017 HOH HOH . H 4 HOH B 18 2018 2018 HOH HOH . H 4 HOH B 19 2019 2019 HOH HOH . H 4 HOH B 20 2020 2020 HOH HOH . H 4 HOH B 21 2021 2021 HOH HOH . H 4 HOH B 22 2022 2022 HOH HOH . H 4 HOH B 23 2023 2023 HOH HOH . H 4 HOH B 24 2024 2024 HOH HOH . H 4 HOH B 25 2025 2025 HOH HOH . H 4 HOH B 26 2026 2026 HOH HOH . H 4 HOH B 27 2027 2027 HOH HOH . H 4 HOH B 28 2028 2028 HOH HOH . H 4 HOH B 29 2029 2029 HOH HOH . H 4 HOH B 30 2030 2030 HOH HOH . H 4 HOH B 31 2031 2031 HOH HOH . H 4 HOH B 32 2032 2032 HOH HOH . H 4 HOH B 33 2033 2033 HOH HOH . H 4 HOH B 34 2034 2034 HOH HOH . H 4 HOH B 35 2035 2035 HOH HOH . H 4 HOH B 36 2036 2036 HOH HOH . H 4 HOH B 37 2037 2037 HOH HOH . H 4 HOH B 38 2038 2038 HOH HOH . H 4 HOH B 39 2039 2039 HOH HOH . H 4 HOH B 40 2040 2040 HOH HOH . H 4 HOH B 41 2041 2041 HOH HOH . H 4 HOH B 42 2042 2042 HOH HOH . H 4 HOH B 43 2043 2043 HOH HOH . H 4 HOH B 44 2044 2044 HOH HOH . H 4 HOH B 45 2045 2045 HOH HOH . H 4 HOH B 46 2046 2046 HOH HOH . H 4 HOH B 47 2047 2047 HOH HOH . H 4 HOH B 48 2048 2048 HOH HOH . H 4 HOH B 49 2049 2049 HOH HOH . H 4 HOH B 50 2050 2050 HOH HOH . H 4 HOH B 51 2051 2051 HOH HOH . H 4 HOH B 52 2052 2052 HOH HOH . H 4 HOH B 53 2053 2053 HOH HOH . H 4 HOH B 54 2054 2054 HOH HOH . H 4 HOH B 55 2055 2055 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 B5U . . . E 2 -3.547 27.116 63.784 1 34.23 ? C1 B5U 1256 B 1 HETATM 2 C C2 B5U . . . E 2 -3.665 25.666 64.197 1 32.44 ? C2 B5U 1256 B 1 HETATM 3 C C3 B5U . . . E 2 -2.839 24.722 63.585 1 27.78 ? C3 B5U 1256 B 1 HETATM 4 C C4 B5U . . . E 2 -2.912 23.377 63.907 1 28.01 ? C4 B5U 1256 B 1 HETATM 5 C C5 B5U . . . E 2 -3.799 22.917 64.876 1 30.47 ? C5 B5U 1256 B 1 HETATM 6 C C6 B5U . . . E 2 -4.638 23.85 65.49 1 33.52 ? C6 B5U 1256 B 1 HETATM 7 C C7 B5U . . . E 2 -4.617 25.211 65.158 1 32.34 ? C7 B5U 1256 B 1 HETATM 8 C C8 B5U . . . E 2 -5.585 26.128 65.869 1 29.29 ? C8 B5U 1256 B 1 HETATM 9 C C9 B5U . . . E 2 -3.881 21.47 65.22 1 30.99 ? C9 B5U 1256 B 1 HETATM 10 C C10 B5U . . . E 2 -4.944 20.902 65.943 1 28.21 ? C10 B5U 1256 B 1 HETATM 11 N N11 B5U . . . E 2 -5.009 19.585 66.219 1 26.17 ? N11 B5U 1256 B 1 HETATM 12 C C12 B5U . . . E 2 -4.002 18.819 65.753 1 26.41 ? C12 B5U 1256 B 1 HETATM 13 C C13 B5U . . . E 2 -2.889 19.376 65.041 1 27.64 ? C13 B5U 1256 B 1 HETATM 14 N N14 B5U . . . E 2 -2.89 20.69 64.741 1 32.58 ? N14 B5U 1256 B 1 HETATM 15 C C15 B5U . . . E 2 -1.77 18.553 64.432 1 26.05 ? C15 B5U 1256 B 1 HETATM 16 O O16 B5U . . . E 2 -1.81 17.322 64.423 1 26.07 ? O16 B5U 1256 B 1 HETATM 17 N N17 B5U . . . E 2 -0.795 19.239 63.845 1 28.5 ? N17 B5U 1256 B 1 HETATM 18 N N18 B5U . . . E 2 -4.036 17.449 65.967 1 23.29 ? N18 B5U 1256 B 1 HETATM 19 C C19 B5U . . . E 2 -5.04 16.606 66.492 1 22.07 ? C19 B5U 1256 B 1 HETATM 20 C C20 B5U . . . E 2 -5.899 17.026 67.519 1 22.91 ? C20 B5U 1256 B 1 HETATM 21 C C21 B5U . . . E 2 -6.811 16.141 68.085 1 22.26 ? C21 B5U 1256 B 1 HETATM 22 C C22 B5U . . . E 2 -6.874 14.82 67.616 1 24.31 ? C22 B5U 1256 B 1 HETATM 23 C C23 B5U . . . E 2 -6.03 14.402 66.589 1 19.19 ? C23 B5U 1256 B 1 HETATM 24 C C24 B5U . . . E 2 -5.109 15.29 66.036 1 18.94 ? C24 B5U 1256 B 1 HETATM 25 O O25 B5U . . . E 2 -7.819 13.923 68.062 1 28.92 ? O25 B5U 1256 B 1 HETATM 26 C C26 B5U . . . E 2 -8.694 14.242 69.172 1 33.86 ? C26 B5U 1256 B 1 HETATM 27 C C27 B5U . . . E 2 -9.426 12.992 69.606 1 37 ? C27 B5U 1256 B 1 HETATM 28 C C28 B5U . . . E 2 -10.6 12.524 68.751 1 41.94 ? C28 B5U 1256 B 1 HETATM 29 N N29 B5U . . . E 2 -11.606 13.575 68.419 1 44.5 ? N29 B5U 1256 B 1 HETATM 30 C C30 B5U . . . E 2 -12.764 13.524 69.327 1 46.32 ? C30 B5U 1256 B 1 HETATM 31 C C31 B5U . . . E 2 -13.757 14.628 68.988 1 48.17 ? C31 B5U 1256 B 1 HETATM 32 N N32 B5U . . . E 2 -14.224 14.512 67.608 1 49 ? N32 B5U 1256 B 1 HETATM 33 C C33 B5U . . . E 2 -13.08 14.525 66.695 1 47.92 ? C33 B5U 1256 B 1 HETATM 34 C C34 B5U . . . E 2 -12.08 13.431 67.036 1 46.1 ? C34 B5U 1256 B 1 HETATM 35 C C35 B5U . . . E 2 -15.15 15.599 67.286 1 49 ? C35 B5U 1256 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #