data_4B6O # _model_server_result.job_id LoM8vEc1GLq_ojp4j0sRkw _model_server_result.datetime_utc '2025-01-02 17:12:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4b6o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1144}' # _entry.id 4B6O # _exptl.entry_id 4B6O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 310.299 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R,2S,4S,5R)-2-(4-methoxyphenyl)methyl-1,4,5-trihydroxy-3-oxocyclohexane-1-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4B6O _cell.length_a 126.19 _cell.length_b 126.19 _cell.length_c 126.19 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4B6O _symmetry.cell_setting ? _symmetry.Int_Tables_number 196 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'F 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 23_544 y,-z-1/2,-x-1/2 0 1 0 0 0 -1 -1 0 0 0 -63.095 -63.095 3 'crystal symmetry operation' 43_445 -z-1/2,-x-1/2,y 0 0 -1 -1 0 0 0 1 0 -63.095 -63.095 0 4 'crystal symmetry operation' 48_445 -y-1/2,-z-1/2,x 0 -1 0 0 0 -1 1 0 0 -63.095 -63.095 0 5 'crystal symmetry operation' 27_454 -x-1/2,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 -63.095 0 -63.095 6 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 7 'crystal symmetry operation' 38_445 -x-1/2,-y-1/2,z -1 0 0 0 -1 0 0 0 1 -63.095 -63.095 0 8 'crystal symmetry operation' 34_454 -y-1/2,z,-x-1/2 0 -1 0 0 0 1 -1 0 0 -63.095 0 -63.095 9 'crystal symmetry operation' 16_544 x,-y-1/2,-z-1/2 1 0 0 0 -1 0 0 0 -1 0 -63.095 -63.095 10 'crystal symmetry operation' 18_544 z,-x-1/2,-y-1/2 0 0 1 -1 0 0 0 -1 0 0 -63.095 -63.095 11 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 12 'crystal symmetry operation' 32_454 -z-1/2,x,-y-1/2 0 0 -1 1 0 0 0 -1 0 -63.095 0 -63.095 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H18 O7' _chem_comp.formula_weight 310.299 _chem_comp.id 3DQ _chem_comp.mon_nstd_flag . _chem_comp.name '(1R,2S,4S,5R)-2-(4-methoxyphenyl)methyl-1,4,5-trihydroxy-3-oxocyclohexane-1-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA OAN 3DQ sing 1 n n OAN CAR 3DQ sing 2 n n CAR CAK 3DQ sing 3 n y CAR CAJ 3DQ doub 4 n y CAK CAI 3DQ doub 5 n y CAI CAQ 3DQ sing 6 n y CAJ CAH 3DQ sing 7 n y CAH CAQ 3DQ doub 8 n y CAQ CAL 3DQ sing 9 n n CAL CAU 3DQ sing 10 n n CAU CAP 3DQ sing 11 n n CAU CAV 3DQ sing 12 n n CAP OAC 3DQ doub 13 n n CAP CAT 3DQ sing 14 n n CAT OAF 3DQ sing 15 n n CAT CAS 3DQ sing 16 n n CAS OAE 3DQ sing 17 n n CAS CAM 3DQ sing 18 n n CAM CAV 3DQ sing 19 n n CAV CAO 3DQ sing 20 n n CAV OAG 3DQ sing 21 n n CAO OAD 3DQ sing 22 n n CAO OAB 3DQ doub 23 n n CAA HAA1 3DQ sing 24 n n CAA HAA2 3DQ sing 25 n n CAA HAA3 3DQ sing 26 n n CAK HAK 3DQ sing 27 n n CAJ HAJ 3DQ sing 28 n n CAI HAI 3DQ sing 29 n n CAH HAH 3DQ sing 30 n n CAL HAL1 3DQ sing 31 n n CAL HAL2 3DQ sing 32 n n CAU HAU 3DQ sing 33 n n CAT HAT 3DQ sing 34 n n OAF HAF 3DQ sing 35 n n CAS HAS 3DQ sing 36 n n OAE HAE 3DQ sing 37 n n CAM HAM1 3DQ sing 38 n n CAM HAM2 3DQ sing 39 n n OAG HAG 3DQ sing 40 n n OAD HAD 3DQ sing 41 n n # _atom_sites.entry_id 4B6O _atom_sites.fract_transf_matrix[1][1] 0.007925 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007925 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007925 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3DQ A 1 1144 1144 3DQ 3DQ . C 3 SO4 A 1 1145 1145 SO4 SO4 . D 3 SO4 A 1 1146 1146 SO4 SO4 . E 3 SO4 A 1 1147 1147 SO4 SO4 . F 3 SO4 A 1 1148 1148 SO4 SO4 . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . G 4 HOH A 14 2014 2014 HOH HOH . G 4 HOH A 15 2015 2015 HOH HOH . G 4 HOH A 16 2016 2016 HOH HOH . G 4 HOH A 17 2017 2017 HOH HOH . G 4 HOH A 18 2018 2018 HOH HOH . G 4 HOH A 19 2019 2019 HOH HOH . G 4 HOH A 20 2020 2020 HOH HOH . G 4 HOH A 21 2021 2021 HOH HOH . G 4 HOH A 22 2022 2022 HOH HOH . G 4 HOH A 23 2023 2023 HOH HOH . G 4 HOH A 24 2024 2024 HOH HOH . G 4 HOH A 25 2025 2025 HOH HOH . G 4 HOH A 26 2026 2026 HOH HOH . G 4 HOH A 27 2027 2027 HOH HOH . G 4 HOH A 28 2028 2028 HOH HOH . G 4 HOH A 29 2029 2029 HOH HOH . G 4 HOH A 30 2030 2030 HOH HOH . G 4 HOH A 31 2031 2031 HOH HOH . G 4 HOH A 32 2032 2032 HOH HOH . G 4 HOH A 33 2033 2033 HOH HOH . G 4 HOH A 34 2034 2034 HOH HOH . G 4 HOH A 35 2035 2035 HOH HOH . G 4 HOH A 36 2036 2036 HOH HOH . G 4 HOH A 37 2037 2037 HOH HOH . G 4 HOH A 38 2038 2038 HOH HOH . G 4 HOH A 39 2039 2039 HOH HOH . G 4 HOH A 40 2040 2040 HOH HOH . G 4 HOH A 41 2041 2041 HOH HOH . G 4 HOH A 42 2042 2042 HOH HOH . G 4 HOH A 43 2043 2043 HOH HOH . G 4 HOH A 44 2044 2044 HOH HOH . G 4 HOH A 45 2045 2045 HOH HOH . G 4 HOH A 46 2046 2046 HOH HOH . G 4 HOH A 47 2047 2047 HOH HOH . G 4 HOH A 48 2048 2048 HOH HOH . G 4 HOH A 49 2049 2049 HOH HOH . G 4 HOH A 50 2050 2050 HOH HOH . G 4 HOH A 51 2051 2051 HOH HOH . G 4 HOH A 52 2052 2052 HOH HOH . G 4 HOH A 53 2053 2053 HOH HOH . G 4 HOH A 54 2054 2054 HOH HOH . G 4 HOH A 55 2055 2055 HOH HOH . G 4 HOH A 56 2056 2056 HOH HOH . G 4 HOH A 57 2057 2057 HOH HOH . G 4 HOH A 58 2058 2058 HOH HOH . G 4 HOH A 59 2059 2059 HOH HOH . G 4 HOH A 60 2060 2060 HOH HOH . G 4 HOH A 61 2061 2061 HOH HOH . G 4 HOH A 62 2062 2062 HOH HOH . G 4 HOH A 63 2063 2063 HOH HOH . G 4 HOH A 64 2064 2064 HOH HOH . G 4 HOH A 65 2065 2065 HOH HOH . G 4 HOH A 66 2066 2066 HOH HOH . G 4 HOH A 67 2067 2067 HOH HOH . G 4 HOH A 68 2068 2068 HOH HOH . G 4 HOH A 69 2069 2069 HOH HOH . G 4 HOH A 70 2070 2070 HOH HOH . G 4 HOH A 71 2071 2071 HOH HOH . G 4 HOH A 72 2072 2072 HOH HOH . G 4 HOH A 73 2073 2073 HOH HOH . G 4 HOH A 74 2074 2074 HOH HOH . G 4 HOH A 75 2075 2075 HOH HOH . G 4 HOH A 76 2076 2076 HOH HOH . G 4 HOH A 77 2077 2077 HOH HOH . G 4 HOH A 78 2078 2078 HOH HOH . G 4 HOH A 79 2079 2079 HOH HOH . G 4 HOH A 80 2080 2080 HOH HOH . G 4 HOH A 81 2081 2081 HOH HOH . G 4 HOH A 82 2082 2082 HOH HOH . G 4 HOH A 83 2083 2083 HOH HOH . G 4 HOH A 84 2084 2084 HOH HOH . G 4 HOH A 85 2085 2085 HOH HOH . G 4 HOH A 86 2086 2086 HOH HOH . G 4 HOH A 87 2087 2087 HOH HOH . G 4 HOH A 88 2088 2088 HOH HOH . G 4 HOH A 89 2089 2089 HOH HOH . G 4 HOH A 90 2090 2090 HOH HOH . G 4 HOH A 91 2091 2091 HOH HOH . G 4 HOH A 92 2092 2092 HOH HOH . G 4 HOH A 93 2093 2093 HOH HOH . G 4 HOH A 94 2094 2094 HOH HOH . G 4 HOH A 95 2095 2095 HOH HOH . G 4 HOH A 96 2096 2096 HOH HOH . G 4 HOH A 97 2097 2097 HOH HOH . G 4 HOH A 98 2098 2098 HOH HOH . G 4 HOH A 99 2099 2099 HOH HOH . G 4 HOH A 100 2100 2100 HOH HOH . G 4 HOH A 101 2101 2101 HOH HOH . G 4 HOH A 102 2102 2102 HOH HOH . G 4 HOH A 103 2103 2103 HOH HOH . G 4 HOH A 104 2104 2104 HOH HOH . G 4 HOH A 105 2105 2105 HOH HOH . G 4 HOH A 106 2106 2106 HOH HOH . G 4 HOH A 107 2107 2107 HOH HOH . G 4 HOH A 108 2108 2108 HOH HOH . G 4 HOH A 109 2109 2109 HOH HOH . G 4 HOH A 110 2110 2110 HOH HOH . G 4 HOH A 111 2111 2111 HOH HOH . G 4 HOH A 112 2112 2112 HOH HOH . G 4 HOH A 113 2113 2113 HOH HOH . G 4 HOH A 114 2114 2114 HOH HOH . G 4 HOH A 115 2115 2115 HOH HOH . G 4 HOH A 116 2116 2116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 3DQ . . . B 2 -52.167 -29.425 -7.69 1 11.48 ? CAA 3DQ 1144 A 1 HETATM 2 O OAN 3DQ . . . B 2 -51.242 -28.944 -6.682 1 13.69 ? OAN 3DQ 1144 A 1 HETATM 3 C CAR 3DQ . . . B 2 -49.908 -29.247 -6.804 1 10.98 ? CAR 3DQ 1144 A 1 HETATM 4 C CAK 3DQ . . . B 2 -49.369 -29.883 -7.907 1 10.68 ? CAK 3DQ 1144 A 1 HETATM 5 C CAI 3DQ . . . B 2 -48.006 -30.157 -7.981 1 9.98 ? CAI 3DQ 1144 A 1 HETATM 6 C CAJ 3DQ . . . B 2 -49.056 -28.903 -5.76 1 11.35 ? CAJ 3DQ 1144 A 1 HETATM 7 C CAH 3DQ . . . B 2 -47.7 -29.184 -5.822 1 9.94 ? CAH 3DQ 1144 A 1 HETATM 8 C CAQ 3DQ . . . B 2 -47.179 -29.83 -6.936 1 6.87 ? CAQ 3DQ 1144 A 1 HETATM 9 C CAL 3DQ . . . B 2 -45.696 -30.133 -6.993 1 8.25 ? CAL 3DQ 1144 A 1 HETATM 10 C CAU 3DQ . . . B 2 -44.87 -28.836 -7.138 1 7.78 ? CAU 3DQ 1144 A 1 HETATM 11 C CAP 3DQ . . . B 2 -45.223 -28.169 -8.481 1 8.6 ? CAP 3DQ 1144 A 1 HETATM 12 O OAC 3DQ . . . B 2 -45.967 -27.169 -8.538 1 7.48 ? OAC 3DQ 1144 A 1 HETATM 13 C CAT 3DQ . . . B 2 -44.637 -28.795 -9.753 1 8.23 ? CAT 3DQ 1144 A 1 HETATM 14 O OAF 3DQ . . . B 2 -44.885 -27.966 -10.913 1 6.6 ? OAF 3DQ 1144 A 1 HETATM 15 C CAS 3DQ . . . B 2 -43.127 -29.004 -9.56 1 7.56 ? CAS 3DQ 1144 A 1 HETATM 16 O OAE 3DQ . . . B 2 -42.616 -29.696 -10.704 1 6.46 ? OAE 3DQ 1144 A 1 HETATM 17 C CAM 3DQ . . . B 2 -42.833 -29.834 -8.305 1 7.65 ? CAM 3DQ 1144 A 1 HETATM 18 C CAV 3DQ . . . B 2 -43.314 -29.084 -7.044 1 8.42 ? CAV 3DQ 1144 A 1 HETATM 19 C CAO 3DQ . . . B 2 -42.986 -29.857 -5.751 1 7.83 ? CAO 3DQ 1144 A 1 HETATM 20 O OAB 3DQ . . . B 2 -42.818 -31.109 -5.83 1 8.96 ? OAB 3DQ 1144 A 1 HETATM 21 O OAD 3DQ . . . B 2 -42.914 -29.186 -4.682 1 7.09 ? OAD 3DQ 1144 A 1 HETATM 22 O OAG 3DQ . . . B 2 -42.636 -27.779 -7.015 1 8.7 ? OAG 3DQ 1144 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 22 #