data_4B6P # _model_server_result.job_id gZm7iZsxm0UFaKjUS2WP0g _model_server_result.datetime_utc '2025-03-21 02:22:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4b6p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1145}' # _entry.id 4B6P # _exptl.entry_id 4B6P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.226 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R,2S,4S,5R)-2-(2,3,4,5,6-pentafluorophenyl)methyl-1,4,5-trihydroxy-3-oxocyclohexane-1-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4B6P _cell.length_a 126.27 _cell.length_b 126.27 _cell.length_c 126.27 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4B6P _symmetry.cell_setting ? _symmetry.Int_Tables_number 196 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'F 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 48_555 -y+1/2,-z+1/2,x 0 -1 0 0 0 -1 1 0 0 63.135 63.135 0 3 'crystal symmetry operation' 32_555 -z+1/2,x,-y+1/2 0 0 -1 1 0 0 0 -1 0 63.135 0 63.135 4 'crystal symmetry operation' 38_555 -x+1/2,-y+1/2,z -1 0 0 0 -1 0 0 0 1 63.135 63.135 0 5 'crystal symmetry operation' 43_555 -z+1/2,-x+1/2,y 0 0 -1 -1 0 0 0 1 0 63.135 63.135 0 6 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 7 'crystal symmetry operation' 23_555 y,-z+1/2,-x+1/2 0 1 0 0 0 -1 -1 0 0 0 63.135 63.135 8 'crystal symmetry operation' 27_555 -x+1/2,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 63.135 0 63.135 9 'crystal symmetry operation' 34_555 -y+1/2,z,-x+1/2 0 -1 0 0 0 1 -1 0 0 63.135 0 63.135 10 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 11 'crystal symmetry operation' 18_555 z,-x+1/2,-y+1/2 0 0 1 -1 0 0 0 -1 0 0 63.135 63.135 12 'crystal symmetry operation' 16_555 x,-y+1/2,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 63.135 63.135 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H11 F5 O6' _chem_comp.formula_weight 370.226 _chem_comp.id 2HN _chem_comp.mon_nstd_flag . _chem_comp.name '(1R,2S,4S,5R)-2-(2,3,4,5,6-pentafluorophenyl)methyl-1,4,5-trihydroxy-3-oxocyclohexane-1-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(1R,2S,4S,5R)-2-(perfluorophenyl)methyl-1,4,5-trihydroxy-3-oxocyclohexane-1-carboxylic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FAK CAT 2HN sing 1 n n CAT CAR 2HN sing 2 n y CAT CAU 2HN doub 3 n y CAR FAI 2HN sing 4 n n CAR CAP 2HN doub 5 n y CAP FAG 2HN sing 6 n n CAP CAQ 2HN sing 7 n y CAQ FAH 2HN sing 8 n n CAQ CAS 2HN doub 9 n y CAS FAJ 2HN sing 10 n n CAS CAU 2HN sing 11 n y CAU CAL 2HN sing 12 n n CAL CAX 2HN sing 13 n n CAX CAY 2HN sing 14 n n CAX CAO 2HN sing 15 n n CAY OAF 2HN sing 16 n n CAY CAN 2HN sing 17 n n CAY CAM 2HN sing 18 n n CAN OAC 2HN sing 19 n n CAN OAA 2HN doub 20 n n CAO OAB 2HN doub 21 n n CAO CAW 2HN sing 22 n n CAW OAE 2HN sing 23 n n CAW CAV 2HN sing 24 n n CAV OAD 2HN sing 25 n n CAV CAM 2HN sing 26 n n CAL HAL1 2HN sing 27 n n CAL HAL2 2HN sing 28 n n CAX HAX 2HN sing 29 n n OAF HAF 2HN sing 30 n n CAM HAM1 2HN sing 31 n n CAM HAM2 2HN sing 32 n n OAC HAC 2HN sing 33 n n CAW HAW 2HN sing 34 n n OAE HAE 2HN sing 35 n n CAV HAV 2HN sing 36 n n OAD HAD 2HN sing 37 n n # _atom_sites.entry_id 4B6P _atom_sites.fract_transf_matrix[1][1] 0.00792 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00792 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00792 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2HN A 1 1145 1145 2HN 2HN . C 3 SO4 A 1 1146 1146 SO4 SO4 . D 3 SO4 A 1 1147 1147 SO4 SO4 . E 4 HOH A 1 2001 2001 HOH HOH . E 4 HOH A 2 2002 2002 HOH HOH . E 4 HOH A 3 2003 2003 HOH HOH . E 4 HOH A 4 2004 2004 HOH HOH . E 4 HOH A 5 2005 2005 HOH HOH . E 4 HOH A 6 2006 2006 HOH HOH . E 4 HOH A 7 2007 2007 HOH HOH . E 4 HOH A 8 2008 2008 HOH HOH . E 4 HOH A 9 2009 2009 HOH HOH . E 4 HOH A 10 2010 2010 HOH HOH . E 4 HOH A 11 2011 2011 HOH HOH . E 4 HOH A 12 2012 2012 HOH HOH . E 4 HOH A 13 2013 2013 HOH HOH . E 4 HOH A 14 2014 2014 HOH HOH . E 4 HOH A 15 2015 2015 HOH HOH . E 4 HOH A 16 2016 2016 HOH HOH . E 4 HOH A 17 2017 2017 HOH HOH . E 4 HOH A 18 2018 2018 HOH HOH . E 4 HOH A 19 2019 2019 HOH HOH . E 4 HOH A 20 2020 2020 HOH HOH . E 4 HOH A 21 2021 2021 HOH HOH . E 4 HOH A 22 2022 2022 HOH HOH . E 4 HOH A 23 2023 2023 HOH HOH . E 4 HOH A 24 2024 2024 HOH HOH . E 4 HOH A 25 2025 2025 HOH HOH . E 4 HOH A 26 2026 2026 HOH HOH . E 4 HOH A 27 2027 2027 HOH HOH . E 4 HOH A 28 2028 2028 HOH HOH . E 4 HOH A 29 2029 2029 HOH HOH . E 4 HOH A 30 2030 2030 HOH HOH . E 4 HOH A 31 2031 2031 HOH HOH . E 4 HOH A 32 2032 2032 HOH HOH . E 4 HOH A 33 2033 2033 HOH HOH . E 4 HOH A 34 2034 2034 HOH HOH . E 4 HOH A 35 2035 2035 HOH HOH . E 4 HOH A 36 2036 2036 HOH HOH . E 4 HOH A 37 2037 2037 HOH HOH . E 4 HOH A 38 2038 2038 HOH HOH . E 4 HOH A 39 2039 2039 HOH HOH . E 4 HOH A 40 2040 2040 HOH HOH . E 4 HOH A 41 2041 2041 HOH HOH . E 4 HOH A 42 2042 2042 HOH HOH . E 4 HOH A 43 2043 2043 HOH HOH . E 4 HOH A 44 2044 2044 HOH HOH . E 4 HOH A 45 2045 2045 HOH HOH . E 4 HOH A 46 2046 2046 HOH HOH . E 4 HOH A 47 2047 2047 HOH HOH . E 4 HOH A 48 2048 2048 HOH HOH . E 4 HOH A 49 2049 2049 HOH HOH . E 4 HOH A 50 2050 2050 HOH HOH . E 4 HOH A 51 2051 2051 HOH HOH . E 4 HOH A 52 2052 2052 HOH HOH . E 4 HOH A 53 2053 2053 HOH HOH . E 4 HOH A 54 2054 2054 HOH HOH . E 4 HOH A 55 2055 2055 HOH HOH . E 4 HOH A 56 2056 2056 HOH HOH . E 4 HOH A 57 2057 2057 HOH HOH . E 4 HOH A 58 2058 2058 HOH HOH . E 4 HOH A 59 2059 2059 HOH HOH . E 4 HOH A 60 2060 2060 HOH HOH . E 4 HOH A 61 2061 2061 HOH HOH . E 4 HOH A 62 2062 2062 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F FAK 2HN . . . B 2 29.775 46.621 4.274 1 22.48 ? FAK 2HN 1145 A 1 HETATM 2 C CAT 2HN . . . B 2 29.681 47.47 5.303 1 20.72 ? CAT 2HN 1145 A 1 HETATM 3 C CAR 2HN . . . B 2 29.428 48.787 5.015 1 21.25 ? CAR 2HN 1145 A 1 HETATM 4 F FAI 2HN . . . B 2 29.307 49.193 3.737 1 22.22 ? FAI 2HN 1145 A 1 HETATM 5 C CAP 2HN . . . B 2 29.319 49.666 6.074 1 22.26 ? CAP 2HN 1145 A 1 HETATM 6 F FAG 2HN . . . B 2 29.087 50.961 5.94 1 26.98 ? FAG 2HN 1145 A 1 HETATM 7 C CAQ 2HN . . . B 2 29.462 49.27 7.357 1 20.91 ? CAQ 2HN 1145 A 1 HETATM 8 F FAH 2HN . . . B 2 29.322 50.197 8.303 1 19.42 ? FAH 2HN 1145 A 1 HETATM 9 C CAS 2HN . . . B 2 29.721 47.965 7.663 1 19.56 ? CAS 2HN 1145 A 1 HETATM 10 F FAJ 2HN . . . B 2 29.846 47.652 8.978 1 20.5 ? FAJ 2HN 1145 A 1 HETATM 11 C CAU 2HN . . . B 2 29.828 47.038 6.622 1 18.56 ? CAU 2HN 1145 A 1 HETATM 12 C CAL 2HN . . . B 2 30.123 45.593 6.931 1 18.27 ? CAL 2HN 1145 A 1 HETATM 13 C CAX 2HN . . . B 2 28.862 44.757 7.158 1 16.24 ? CAX 2HN 1145 A 1 HETATM 14 C CAY 2HN . . . B 2 29.169 43.263 7.171 1 15.04 ? CAY 2HN 1145 A 1 HETATM 15 O OAF 2HN . . . B 2 27.884 42.635 7.022 1 14.63 ? OAF 2HN 1145 A 1 HETATM 16 C CAN 2HN . . . B 2 30.022 42.949 5.932 1 14.81 ? CAN 2HN 1145 A 1 HETATM 17 O OAC 2HN . . . B 2 29.386 42.938 4.876 1 14.78 ? OAC 2HN 1145 A 1 HETATM 18 O OAA 2HN . . . B 2 31.275 42.834 6.05 1 14.94 ? OAA 2HN 1145 A 1 HETATM 19 C CAO 2HN . . . B 2 28.233 45.169 8.485 1 15.32 ? CAO 2HN 1145 A 1 HETATM 20 O OAB 2HN . . . B 2 27.345 46.02 8.459 1 16.49 ? OAB 2HN 1145 A 1 HETATM 21 C CAW 2HN . . . B 2 28.822 44.609 9.805 1 15.49 ? CAW 2HN 1145 A 1 HETATM 22 O OAE 2HN . . . B 2 28.044 44.934 10.962 1 13.68 ? OAE 2HN 1145 A 1 HETATM 23 C CAV 2HN . . . B 2 29.046 43.085 9.691 1 15.17 ? CAV 2HN 1145 A 1 HETATM 24 O OAD 2HN . . . B 2 29.746 42.672 10.872 1 13.72 ? OAD 2HN 1145 A 1 HETATM 25 C CAM 2HN . . . B 2 29.909 42.786 8.455 1 13.29 ? CAM 2HN 1145 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #