data_4B6R
#
_model_server_result.job_id            BRq_UPH6bGPdPbsPG5x5Tg 
_model_server_result.datetime_utc      '2024-12-21 13:47:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4b6r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1158}' 
#
_entry.id    4B6R 
#
_exptl.entry_id    4B6R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              310.299 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R,2S,4S,5R)-2-(4-methoxyphenyl)methyl-1,4,5-trihydroxy-3-oxocyclohexane-1-carboxylic acid' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4B6R 
_cell.length_a            100.436 
_cell.length_b            100.436 
_cell.length_c            104.3 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4B6R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        93 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 42 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 G N N 
#
_chem_comp.formula           'C15 H18 O7' 
_chem_comp.formula_weight    310.299 
_chem_comp.id                3DQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R,2S,4S,5R)-2-(4-methoxyphenyl)methyl-1,4,5-trihydroxy-3-oxocyclohexane-1-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA OAN 3DQ sing 1 n n 
OAN CAR 3DQ sing 2 n n 
CAR CAK 3DQ sing 3 n y 
CAR CAJ 3DQ doub 4 n y 
CAK CAI 3DQ doub 5 n y 
CAI CAQ 3DQ sing 6 n y 
CAJ CAH 3DQ sing 7 n y 
CAH CAQ 3DQ doub 8 n y 
CAQ CAL 3DQ sing 9 n n 
CAL CAU 3DQ sing 10 n n 
CAU CAP 3DQ sing 11 n n 
CAU CAV 3DQ sing 12 n n 
CAP OAC 3DQ doub 13 n n 
CAP CAT 3DQ sing 14 n n 
CAT OAF 3DQ sing 15 n n 
CAT CAS 3DQ sing 16 n n 
CAS OAE 3DQ sing 17 n n 
CAS CAM 3DQ sing 18 n n 
CAM CAV 3DQ sing 19 n n 
CAV CAO 3DQ sing 20 n n 
CAV OAG 3DQ sing 21 n n 
CAO OAD 3DQ sing 22 n n 
CAO OAB 3DQ doub 23 n n 
CAA HAA1 3DQ sing 24 n n 
CAA HAA2 3DQ sing 25 n n 
CAA HAA3 3DQ sing 26 n n 
CAK HAK 3DQ sing 27 n n 
CAJ HAJ 3DQ sing 28 n n 
CAI HAI 3DQ sing 29 n n 
CAH HAH 3DQ sing 30 n n 
CAL HAL1 3DQ sing 31 n n 
CAL HAL2 3DQ sing 32 n n 
CAU HAU 3DQ sing 33 n n 
CAT HAT 3DQ sing 34 n n 
OAF HAF 3DQ sing 35 n n 
CAS HAS 3DQ sing 36 n n 
OAE HAE 3DQ sing 37 n n 
CAM HAM1 3DQ sing 38 n n 
CAM HAM2 3DQ sing 39 n n 
OAG HAG 3DQ sing 40 n n 
OAD HAD 3DQ sing 41 n n 
#
_atom_sites.entry_id                     4B6R 
_atom_sites.fract_transf_matrix[1][1]    0.009957 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009957 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009588 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 3DQ A 1 1158 1158 3DQ 3DQ . 
E 2 3DQ B 1 1158 1158 3DQ 3DQ . 
F 3 SO4 B 1 1159 1159 SO4 SO4 . 
G 2 3DQ C 1 1158 1158 3DQ 3DQ . 
H 4 HOH A 1 2001 2001 HOH HOH . 
H 4 HOH A 2 2002 2002 HOH HOH . 
H 4 HOH A 3 2003 2003 HOH HOH . 
H 4 HOH A 4 2004 2004 HOH HOH . 
H 4 HOH A 5 2005 2005 HOH HOH . 
H 4 HOH A 6 2006 2006 HOH HOH . 
H 4 HOH A 7 2007 2007 HOH HOH . 
H 4 HOH A 8 2008 2008 HOH HOH . 
H 4 HOH A 9 2009 2009 HOH HOH . 
H 4 HOH A 10 2010 2010 HOH HOH . 
H 4 HOH A 11 2011 2011 HOH HOH . 
H 4 HOH A 12 2012 2012 HOH HOH . 
H 4 HOH A 13 2013 2013 HOH HOH . 
H 4 HOH A 14 2014 2014 HOH HOH . 
H 4 HOH A 15 2015 2015 HOH HOH . 
H 4 HOH A 16 2016 2016 HOH HOH . 
H 4 HOH A 17 2017 2017 HOH HOH . 
H 4 HOH A 18 2018 2018 HOH HOH . 
H 4 HOH A 19 2019 2019 HOH HOH . 
H 4 HOH A 20 2020 2020 HOH HOH . 
H 4 HOH A 21 2021 2021 HOH HOH . 
H 4 HOH A 22 2022 2022 HOH HOH . 
H 4 HOH A 23 2023 2023 HOH HOH . 
H 4 HOH A 24 2024 2024 HOH HOH . 
H 4 HOH A 25 2025 2025 HOH HOH . 
H 4 HOH A 26 2026 2026 HOH HOH . 
H 4 HOH A 27 2027 2027 HOH HOH . 
H 4 HOH A 28 2028 2028 HOH HOH . 
H 4 HOH A 29 2029 2029 HOH HOH . 
H 4 HOH A 30 2030 2030 HOH HOH . 
H 4 HOH A 31 2031 2031 HOH HOH . 
H 4 HOH A 32 2032 2032 HOH HOH . 
H 4 HOH A 33 2033 2033 HOH HOH . 
H 4 HOH A 34 2034 2034 HOH HOH . 
H 4 HOH A 35 2035 2035 HOH HOH . 
H 4 HOH A 36 2036 2036 HOH HOH . 
H 4 HOH A 37 2037 2037 HOH HOH . 
H 4 HOH A 38 2038 2038 HOH HOH . 
H 4 HOH A 39 2039 2039 HOH HOH . 
H 4 HOH A 40 2040 2040 HOH HOH . 
H 4 HOH A 41 2041 2041 HOH HOH . 
H 4 HOH A 42 2042 2042 HOH HOH . 
H 4 HOH A 43 2043 2043 HOH HOH . 
H 4 HOH A 44 2044 2044 HOH HOH . 
H 4 HOH A 45 2045 2045 HOH HOH . 
H 4 HOH A 46 2046 2046 HOH HOH . 
H 4 HOH A 47 2047 2047 HOH HOH . 
H 4 HOH A 48 2048 2048 HOH HOH . 
H 4 HOH A 49 2049 2049 HOH HOH . 
H 4 HOH A 50 2050 2050 HOH HOH . 
H 4 HOH A 51 2051 2051 HOH HOH . 
H 4 HOH A 52 2052 2052 HOH HOH . 
H 4 HOH A 53 2053 2053 HOH HOH . 
H 4 HOH A 54 2054 2054 HOH HOH . 
H 4 HOH A 55 2055 2055 HOH HOH . 
H 4 HOH A 56 2056 2056 HOH HOH . 
H 4 HOH A 57 2057 2057 HOH HOH . 
H 4 HOH A 58 2058 2058 HOH HOH . 
H 4 HOH A 59 2059 2059 HOH HOH . 
H 4 HOH A 60 2060 2060 HOH HOH . 
H 4 HOH A 61 2061 2061 HOH HOH . 
H 4 HOH A 62 2062 2062 HOH HOH . 
H 4 HOH A 63 2063 2063 HOH HOH . 
H 4 HOH A 64 2064 2064 HOH HOH . 
H 4 HOH A 65 2065 2065 HOH HOH . 
H 4 HOH A 66 2066 2066 HOH HOH . 
H 4 HOH A 67 2067 2067 HOH HOH . 
H 4 HOH A 68 2068 2068 HOH HOH . 
H 4 HOH A 69 2069 2069 HOH HOH . 
H 4 HOH A 70 2070 2070 HOH HOH . 
H 4 HOH A 71 2071 2071 HOH HOH . 
H 4 HOH A 72 2072 2072 HOH HOH . 
H 4 HOH A 73 2073 2073 HOH HOH . 
H 4 HOH A 74 2074 2074 HOH HOH . 
H 4 HOH A 75 2075 2075 HOH HOH . 
H 4 HOH A 76 2076 2076 HOH HOH . 
H 4 HOH A 77 2077 2077 HOH HOH . 
H 4 HOH A 78 2078 2078 HOH HOH . 
H 4 HOH A 79 2079 2079 HOH HOH . 
H 4 HOH A 80 2080 2080 HOH HOH . 
H 4 HOH A 81 2081 2081 HOH HOH . 
H 4 HOH A 82 2082 2082 HOH HOH . 
H 4 HOH A 83 2083 2083 HOH HOH . 
H 4 HOH A 84 2084 2084 HOH HOH . 
H 4 HOH A 85 2085 2085 HOH HOH . 
H 4 HOH A 86 2086 2086 HOH HOH . 
I 4 HOH B 1 2001 2001 HOH HOH . 
I 4 HOH B 2 2002 2002 HOH HOH . 
I 4 HOH B 3 2003 2003 HOH HOH . 
I 4 HOH B 4 2004 2004 HOH HOH . 
I 4 HOH B 5 2005 2005 HOH HOH . 
I 4 HOH B 6 2006 2006 HOH HOH . 
I 4 HOH B 7 2007 2007 HOH HOH . 
I 4 HOH B 8 2008 2008 HOH HOH . 
I 4 HOH B 9 2009 2009 HOH HOH . 
I 4 HOH B 10 2010 2010 HOH HOH . 
I 4 HOH B 11 2011 2011 HOH HOH . 
I 4 HOH B 12 2012 2012 HOH HOH . 
I 4 HOH B 13 2013 2013 HOH HOH . 
I 4 HOH B 14 2014 2014 HOH HOH . 
I 4 HOH B 15 2015 2015 HOH HOH . 
I 4 HOH B 16 2016 2016 HOH HOH . 
I 4 HOH B 17 2017 2017 HOH HOH . 
I 4 HOH B 18 2018 2018 HOH HOH . 
I 4 HOH B 19 2019 2019 HOH HOH . 
I 4 HOH B 20 2020 2020 HOH HOH . 
I 4 HOH B 21 2021 2021 HOH HOH . 
I 4 HOH B 22 2022 2022 HOH HOH . 
I 4 HOH B 23 2023 2023 HOH HOH . 
I 4 HOH B 24 2024 2024 HOH HOH . 
I 4 HOH B 25 2025 2025 HOH HOH . 
I 4 HOH B 26 2026 2026 HOH HOH . 
I 4 HOH B 27 2027 2027 HOH HOH . 
I 4 HOH B 28 2028 2028 HOH HOH . 
I 4 HOH B 29 2029 2029 HOH HOH . 
I 4 HOH B 30 2030 2030 HOH HOH . 
I 4 HOH B 31 2031 2031 HOH HOH . 
I 4 HOH B 32 2032 2032 HOH HOH . 
I 4 HOH B 33 2033 2033 HOH HOH . 
I 4 HOH B 34 2034 2034 HOH HOH . 
I 4 HOH B 35 2035 2035 HOH HOH . 
I 4 HOH B 36 2036 2036 HOH HOH . 
I 4 HOH B 37 2037 2037 HOH HOH . 
I 4 HOH B 38 2038 2038 HOH HOH . 
I 4 HOH B 39 2039 2039 HOH HOH . 
I 4 HOH B 40 2040 2040 HOH HOH . 
I 4 HOH B 41 2041 2041 HOH HOH . 
I 4 HOH B 42 2042 2042 HOH HOH . 
I 4 HOH B 43 2043 2043 HOH HOH . 
I 4 HOH B 44 2044 2044 HOH HOH . 
I 4 HOH B 45 2045 2045 HOH HOH . 
I 4 HOH B 46 2046 2046 HOH HOH . 
I 4 HOH B 47 2047 2047 HOH HOH . 
I 4 HOH B 48 2048 2048 HOH HOH . 
I 4 HOH B 49 2049 2049 HOH HOH . 
J 4 HOH C 1 2001 2001 HOH HOH . 
J 4 HOH C 2 2002 2002 HOH HOH . 
J 4 HOH C 3 2003 2003 HOH HOH . 
J 4 HOH C 4 2004 2004 HOH HOH . 
J 4 HOH C 5 2005 2005 HOH HOH . 
J 4 HOH C 6 2006 2006 HOH HOH . 
J 4 HOH C 7 2007 2007 HOH HOH . 
J 4 HOH C 8 2008 2008 HOH HOH . 
J 4 HOH C 9 2009 2009 HOH HOH . 
J 4 HOH C 10 2010 2010 HOH HOH . 
J 4 HOH C 11 2011 2011 HOH HOH . 
J 4 HOH C 12 2012 2012 HOH HOH . 
J 4 HOH C 13 2013 2013 HOH HOH . 
J 4 HOH C 14 2014 2014 HOH HOH . 
J 4 HOH C 15 2015 2015 HOH HOH . 
J 4 HOH C 16 2016 2016 HOH HOH . 
J 4 HOH C 17 2017 2017 HOH HOH . 
J 4 HOH C 18 2018 2018 HOH HOH . 
J 4 HOH C 19 2019 2019 HOH HOH . 
J 4 HOH C 20 2020 2020 HOH HOH . 
J 4 HOH C 21 2021 2021 HOH HOH . 
J 4 HOH C 22 2022 2022 HOH HOH . 
J 4 HOH C 23 2023 2023 HOH HOH . 
J 4 HOH C 24 2024 2024 HOH HOH . 
J 4 HOH C 25 2025 2025 HOH HOH . 
J 4 HOH C 26 2026 2026 HOH HOH . 
J 4 HOH C 27 2027 2027 HOH HOH . 
J 4 HOH C 28 2028 2028 HOH HOH . 
J 4 HOH C 29 2029 2029 HOH HOH . 
J 4 HOH C 30 2030 2030 HOH HOH . 
J 4 HOH C 31 2031 2031 HOH HOH . 
J 4 HOH C 32 2032 2032 HOH HOH . 
J 4 HOH C 33 2033 2033 HOH HOH . 
J 4 HOH C 34 2034 2034 HOH HOH . 
J 4 HOH C 35 2035 2035 HOH HOH . 
J 4 HOH C 36 2036 2036 HOH HOH . 
J 4 HOH C 37 2037 2037 HOH HOH . 
J 4 HOH C 38 2038 2038 HOH HOH . 
J 4 HOH C 39 2039 2039 HOH HOH . 
J 4 HOH C 40 2040 2040 HOH HOH . 
J 4 HOH C 41 2041 2041 HOH HOH . 
J 4 HOH C 42 2042 2042 HOH HOH . 
J 4 HOH C 43 2043 2043 HOH HOH . 
J 4 HOH C 44 2044 2044 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA 3DQ . . . E 2 20.24 24.43 -0.046 1 59.6 ? CAA 3DQ 1158 B 1 
HETATM 2 O OAN 3DQ . . . E 2 19.493 24.737 -1.242 1 59.81 ? OAN 3DQ 1158 B 1 
HETATM 3 C CAR 3DQ . . . E 2 18.16 25.059 -1.153 1 56.4 ? CAR 3DQ 1158 B 1 
HETATM 4 C CAK 3DQ . . . E 2 17.737 26.396 -1.108 1 55.77 ? CAK 3DQ 1158 B 1 
HETATM 5 C CAI 3DQ . . . E 2 16.364 26.656 -0.997 1 53.83 ? CAI 3DQ 1158 B 1 
HETATM 6 C CAJ 3DQ . . . E 2 17.224 24.025 -1.094 1 54.18 ? CAJ 3DQ 1158 B 1 
HETATM 7 C CAH 3DQ . . . E 2 15.858 24.289 -0.987 1 51.34 ? CAH 3DQ 1158 B 1 
HETATM 8 C CAQ 3DQ . . . E 2 15.411 25.607 -0.937 1 50.1 ? CAQ 3DQ 1158 B 1 
HETATM 9 C CAL 3DQ . . . E 2 13.918 25.874 -0.79 1 43.58 ? CAL 3DQ 1158 B 1 
HETATM 10 C CAU 3DQ . . . E 2 13.162 26.056 -2.111 1 39.8 ? CAU 3DQ 1158 B 1 
HETATM 11 C CAP 3DQ . . . E 2 13.708 27.332 -2.669 1 39.8 ? CAP 3DQ 1158 B 1 
HETATM 12 O OAC 3DQ . . . E 2 14.625 27.298 -3.487 1 40.15 ? OAC 3DQ 1158 B 1 
HETATM 13 C CAT 3DQ . . . E 2 13.146 28.644 -2.172 1 39.75 ? CAT 3DQ 1158 B 1 
HETATM 14 O OAF 3DQ . . . E 2 13.638 29.744 -2.971 1 39.93 ? OAF 3DQ 1158 B 1 
HETATM 15 C CAS 3DQ . . . E 2 11.613 28.616 -2.083 1 37.71 ? CAS 3DQ 1158 B 1 
HETATM 16 O OAE 3DQ . . . E 2 11.208 29.789 -1.381 1 36.87 ? OAE 3DQ 1158 B 1 
HETATM 17 C CAM 3DQ . . . E 2 11.08 27.374 -1.313 1 36.27 ? CAM 3DQ 1158 B 1 
HETATM 18 C CAV 3DQ . . . E 2 11.619 26.064 -1.928 1 36.11 ? CAV 3DQ 1158 B 1 
HETATM 19 C CAO 3DQ . . . E 2 11.207 24.855 -1.104 1 31.44 ? CAO 3DQ 1158 B 1 
HETATM 20 O OAB 3DQ . . . E 2 10.803 24.995 0.066 1 29.57 ? OAB 3DQ 1158 B 1 
HETATM 21 O OAD 3DQ . . . E 2 11.285 23.738 -1.647 1 31.22 ? OAD 3DQ 1158 B 1 
HETATM 22 O OAG 3DQ . . . E 2 10.955 25.957 -3.19 1 35.41 ? OAG 3DQ 1158 B 1 
#
_model_server_stats.io_time_ms              82 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           1037 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           22 
#