data_4B7N # _model_server_result.job_id gEgI0iUwLfGOLO0S6WKvQw _model_server_result.datetime_utc '2024-11-23 03:46:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4b7n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 4B7N # _exptl.entry_id 4B7N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 332.31 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ZANAMIVIR _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4B7N _cell.length_a 118.35 _cell.length_b 118.35 _cell.length_c 68.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4B7N _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y+1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 59.175 59.175 0 3 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 118.35 0 0 4 'crystal symmetry operation' 3_545 -y+1/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 59.175 -59.175 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 92 A CYS 92 1_555 A SG CYS 417 A CYS 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 124 A CYS 124 1_555 A SG CYS 129 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 184 A CYS 184 1_555 A SG CYS 231 A CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 A SG CYS 233 A CYS 233 1_555 A SG CYS 238 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf5 A SG CYS 279 A CYS 279 1_555 A SG CYS 292 A CYS 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 A SG CYS 281 A CYS 281 1_555 A SG CYS 290 A CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 A SG CYS 318 A CYS 318 1_555 A SG CYS 335 A CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf8 A SG CYS 421 A CYS 421 1_555 A SG CYS 446 A CYS 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? covale ? covale1 A ND2 ASN 88 A ASN 88 1_555 B C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 A ND2 ASN 146 A ASN 146 1_555 C C1 NAG . A NAG 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 A ND2 ASN 235 A ASN 235 1_555 D C1 NAG . A NAG 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? metalc ? metalc1 A O ASP 294 A ASP 294 1_555 F CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc2 A O GLY 298 A GLY 298 1_555 F CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc3 A OD2 ASP 324 A ASP 324 1_555 F CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc4 A O GLY 342 A GLY 342 1_555 F CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc5 A O ASN 344 A ASN 344 1_555 F CA CA . A CA 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc6 F CA CA . A CA 701 1_555 G O HOH . A HOH 2081 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? # _chem_comp.formula 'C12 H20 N4 O7' _chem_comp.formula_weight 332.31 _chem_comp.id ZMR _chem_comp.mon_nstd_flag . _chem_comp.name ZANAMIVIR _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms '4-GUANIDINO-2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID;4-guanidino-Neu5Ac2en;MODIFIED SIALIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A ZMR doub 406 n n C1 O1B ZMR sing 407 n n C1 C2 ZMR sing 408 n n C2 C3 ZMR doub 409 n n C2 O6 ZMR sing 410 n n C3 C4 ZMR sing 411 n n C3 H3 ZMR sing 412 n n C4 C5 ZMR sing 413 n n C4 NE ZMR sing 414 n n C4 H4 ZMR sing 415 n n C5 N5 ZMR sing 416 n n C5 C6 ZMR sing 417 n n C5 H5 ZMR sing 418 n n N5 C10 ZMR sing 419 n n N5 HN5 ZMR sing 420 n n C10 O10 ZMR doub 421 n n C10 C11 ZMR sing 422 n n C11 H111 ZMR sing 423 n n C11 H112 ZMR sing 424 n n C11 H113 ZMR sing 425 n n C6 O6 ZMR sing 426 n n C6 C7 ZMR sing 427 n n C6 H6 ZMR sing 428 n n C7 O7 ZMR sing 429 n n C7 C8 ZMR sing 430 n n C7 H7 ZMR sing 431 n n O7 HO7 ZMR sing 432 n n C8 O8 ZMR sing 433 n n C8 C9 ZMR sing 434 n n C8 H8 ZMR sing 435 n n O8 HO8 ZMR sing 436 n n C9 O9 ZMR sing 437 n n C9 H91 ZMR sing 438 n n C9 H92 ZMR sing 439 n n O9 HO9 ZMR sing 440 n n NE CZ ZMR sing 441 n n CZ NH1 ZMR doub 442 n n CZ NH2 ZMR sing 443 n n NH1 HNH1 ZMR sing 444 n n NH2 HN21 ZMR sing 445 n n NH2 HN22 ZMR sing 446 n n O1B HO1B ZMR sing 447 n n NE HNE ZMR sing 448 n n # _atom_sites.entry_id 4B7N _atom_sites.fract_transf_matrix[1][1] 0.00845 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014624 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 501 501 NAG NAG . C 2 NAG A 1 511 511 NAG NAG . D 2 NAG A 1 521 521 NAG NAG . E 3 ZMR A 1 601 601 ZMR ZMR . F 4 CA A 1 701 701 CA CA . G 5 HOH A 1 2001 2001 HOH HOH . G 5 HOH A 2 2002 2002 HOH HOH . G 5 HOH A 3 2003 2003 HOH HOH . G 5 HOH A 4 2004 2004 HOH HOH . G 5 HOH A 5 2005 2005 HOH HOH . G 5 HOH A 6 2006 2006 HOH HOH . G 5 HOH A 7 2007 2007 HOH HOH . G 5 HOH A 8 2008 2008 HOH HOH . G 5 HOH A 9 2009 2009 HOH HOH . G 5 HOH A 10 2010 2010 HOH HOH . G 5 HOH A 11 2011 2011 HOH HOH . G 5 HOH A 12 2012 2012 HOH HOH . G 5 HOH A 13 2013 2013 HOH HOH . G 5 HOH A 14 2014 2014 HOH HOH . G 5 HOH A 15 2015 2015 HOH HOH . G 5 HOH A 16 2016 2016 HOH HOH . G 5 HOH A 17 2017 2017 HOH HOH . G 5 HOH A 18 2018 2018 HOH HOH . G 5 HOH A 19 2019 2019 HOH HOH . G 5 HOH A 20 2020 2020 HOH HOH . G 5 HOH A 21 2021 2021 HOH HOH . G 5 HOH A 22 2022 2022 HOH HOH . G 5 HOH A 23 2023 2023 HOH HOH . G 5 HOH A 24 2024 2024 HOH HOH . G 5 HOH A 25 2025 2025 HOH HOH . G 5 HOH A 26 2026 2026 HOH HOH . G 5 HOH A 27 2027 2027 HOH HOH . G 5 HOH A 28 2028 2028 HOH HOH . G 5 HOH A 29 2029 2029 HOH HOH . G 5 HOH A 30 2030 2030 HOH HOH . G 5 HOH A 31 2031 2031 HOH HOH . G 5 HOH A 32 2032 2032 HOH HOH . G 5 HOH A 33 2033 2033 HOH HOH . G 5 HOH A 34 2034 2034 HOH HOH . G 5 HOH A 35 2035 2035 HOH HOH . G 5 HOH A 36 2036 2036 HOH HOH . G 5 HOH A 37 2037 2037 HOH HOH . G 5 HOH A 38 2038 2038 HOH HOH . G 5 HOH A 39 2039 2039 HOH HOH . G 5 HOH A 40 2040 2040 HOH HOH . G 5 HOH A 41 2041 2041 HOH HOH . G 5 HOH A 42 2042 2042 HOH HOH . G 5 HOH A 43 2043 2043 HOH HOH . G 5 HOH A 44 2044 2044 HOH HOH . G 5 HOH A 45 2045 2045 HOH HOH . G 5 HOH A 46 2046 2046 HOH HOH . G 5 HOH A 47 2047 2047 HOH HOH . G 5 HOH A 48 2048 2048 HOH HOH . G 5 HOH A 49 2049 2049 HOH HOH . G 5 HOH A 50 2050 2050 HOH HOH . G 5 HOH A 51 2051 2051 HOH HOH . G 5 HOH A 52 2052 2052 HOH HOH . G 5 HOH A 53 2053 2053 HOH HOH . G 5 HOH A 54 2054 2054 HOH HOH . G 5 HOH A 55 2055 2055 HOH HOH . G 5 HOH A 56 2056 2056 HOH HOH . G 5 HOH A 57 2057 2057 HOH HOH . G 5 HOH A 58 2058 2058 HOH HOH . G 5 HOH A 59 2059 2059 HOH HOH . G 5 HOH A 60 2060 2060 HOH HOH . G 5 HOH A 61 2061 2061 HOH HOH . G 5 HOH A 62 2062 2062 HOH HOH . G 5 HOH A 63 2063 2063 HOH HOH . G 5 HOH A 64 2064 2064 HOH HOH . G 5 HOH A 65 2065 2065 HOH HOH . G 5 HOH A 66 2066 2066 HOH HOH . G 5 HOH A 67 2067 2067 HOH HOH . G 5 HOH A 68 2068 2068 HOH HOH . G 5 HOH A 69 2069 2069 HOH HOH . G 5 HOH A 70 2070 2070 HOH HOH . G 5 HOH A 71 2071 2071 HOH HOH . G 5 HOH A 72 2072 2072 HOH HOH . G 5 HOH A 73 2073 2073 HOH HOH . G 5 HOH A 74 2074 2074 HOH HOH . G 5 HOH A 75 2075 2075 HOH HOH . G 5 HOH A 76 2076 2076 HOH HOH . G 5 HOH A 77 2077 2077 HOH HOH . G 5 HOH A 78 2078 2078 HOH HOH . G 5 HOH A 79 2079 2079 HOH HOH . G 5 HOH A 80 2080 2080 HOH HOH . G 5 HOH A 81 2081 2081 HOH HOH . G 5 HOH A 82 2082 2082 HOH HOH . G 5 HOH A 83 2083 2083 HOH HOH . G 5 HOH A 84 2084 2084 HOH HOH . G 5 HOH A 85 2085 2085 HOH HOH . G 5 HOH A 86 2086 2086 HOH HOH . G 5 HOH A 87 2087 2087 HOH HOH . G 5 HOH A 88 2088 2088 HOH HOH . G 5 HOH A 89 2089 2089 HOH HOH . G 5 HOH A 90 2090 2090 HOH HOH . G 5 HOH A 91 2091 2091 HOH HOH . G 5 HOH A 92 2092 2092 HOH HOH . G 5 HOH A 93 2093 2093 HOH HOH . G 5 HOH A 94 2094 2094 HOH HOH . G 5 HOH A 95 2095 2095 HOH HOH . G 5 HOH A 96 2096 2096 HOH HOH . G 5 HOH A 97 2097 2097 HOH HOH . G 5 HOH A 98 2098 2098 HOH HOH . G 5 HOH A 99 2099 2099 HOH HOH . G 5 HOH A 100 2100 2100 HOH HOH . G 5 HOH A 101 2101 2101 HOH HOH . G 5 HOH A 102 2102 2102 HOH HOH . G 5 HOH A 103 2103 2103 HOH HOH . G 5 HOH A 104 2104 2104 HOH HOH . G 5 HOH A 105 2105 2105 HOH HOH . G 5 HOH A 106 2106 2106 HOH HOH . G 5 HOH A 107 2107 2107 HOH HOH . G 5 HOH A 108 2108 2108 HOH HOH . G 5 HOH A 109 2109 2109 HOH HOH . G 5 HOH A 110 2110 2110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ZMR . . . E 3 29.06 -5.579 12.076 1 12.06 ? C1 ZMR 601 A 1 HETATM 2 O O1A ZMR . . . E 3 29.937 -4.796 11.648 1 12.05 ? O1A ZMR 601 A 1 HETATM 3 O O1B ZMR . . . E 3 27.84 -5.32 11.973 1 11.97 ? O1B ZMR 601 A 1 HETATM 4 C C2 ZMR . . . E 3 29.441 -6.838 12.717 1 12.11 ? C2 ZMR 601 A 1 HETATM 5 C C3 ZMR . . . E 3 30.714 -7.104 13.079 1 12.12 ? C3 ZMR 601 A 1 HETATM 6 C C4 ZMR . . . E 3 31.01 -8.111 14.176 1 12.14 ? C4 ZMR 601 A 1 HETATM 7 C C5 ZMR . . . E 3 29.942 -9.211 14.166 1 12.13 ? C5 ZMR 601 A 1 HETATM 8 N N5 ZMR . . . E 3 30.112 -10.133 15.282 1 12.14 ? N5 ZMR 601 A 1 HETATM 9 C C10 ZMR . . . E 3 30.542 -11.393 15.136 1 12.1 ? C10 ZMR 601 A 1 HETATM 10 O O10 ZMR . . . E 3 30.742 -11.913 14.049 1 12.06 ? O10 ZMR 601 A 1 HETATM 11 C C11 ZMR . . . E 3 30.769 -12.154 16.41 1 12.04 ? C11 ZMR 601 A 1 HETATM 12 C C6 ZMR . . . E 3 28.549 -8.573 14.162 1 12.14 ? C6 ZMR 601 A 1 HETATM 13 O O6 ZMR . . . E 3 28.39 -7.817 12.958 1 12.17 ? O6 ZMR 601 A 1 HETATM 14 C C7 ZMR . . . E 3 27.403 -9.579 14.236 1 12.13 ? C7 ZMR 601 A 1 HETATM 15 O O7 ZMR . . . E 3 27.429 -10.403 13.063 1 12.09 ? O7 ZMR 601 A 1 HETATM 16 C C8 ZMR . . . E 3 26.05 -8.867 14.345 1 12.15 ? C8 ZMR 601 A 1 HETATM 17 O O8 ZMR . . . E 3 25.89 -8.291 15.646 1 12.16 ? O8 ZMR 601 A 1 HETATM 18 C C9 ZMR . . . E 3 24.872 -9.8 14.087 1 12.17 ? C9 ZMR 601 A 1 HETATM 19 O O9 ZMR . . . E 3 24.901 -10.878 15.03 1 12.23 ? O9 ZMR 601 A 1 HETATM 20 N NE ZMR . . . E 3 32.3 -8.768 13.971 1 12.16 ? NE ZMR 601 A 1 HETATM 21 C CZ ZMR . . . E 3 33.096 -9.075 14.912 1 12.14 ? CZ ZMR 601 A 1 HETATM 22 N NH1 ZMR . . . E 3 34.251 -9.672 14.617 1 12.08 ? NH1 ZMR 601 A 1 HETATM 23 N NH2 ZMR . . . E 3 32.801 -8.821 16.191 1 12.12 ? NH2 ZMR 601 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #