data_4B81 # _model_server_result.job_id fCgY1rzzMRS45b6oUcKgaQ _model_server_result.datetime_utc '2024-11-23 21:38:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4b81 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1549}' # _entry.id 4B81 # _exptl.entry_id 4B81 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4B81 _cell.length_a 77.959 _cell.length_b 109.876 _cell.length_c 227.926 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4B81 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 69 A CYS 69 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 257 A CYS 257 1_555 A SG CYS 272 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 409 A CYS 409 1_555 A SG CYS 529 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 B SG CYS 69 B CYS 69 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 B SG CYS 257 B CYS 257 1_555 B SG CYS 272 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 B SG CYS 409 B CYS 409 1_555 B SG CYS 529 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A ND2 ASN 350 A ASN 350 1_555 E C1 NAG . A NAG 1544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 A ND2 ASN 464 A ASN 464 1_555 G C1 NAG . A NAG 1546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale3 B ND2 ASN 350 B ASN 350 1_555 P C1 NAG . B NAG 1549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4B81 _atom_sites.fract_transf_matrix[1][1] 0.012827 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009101 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN4 A 1 600 600 ZN4 ZN4 . D 3 SO4 A 1 1543 1543 SO4 SO4 . E 4 NAG A 1 1544 1544 NAG NAG . F 5 PEG A 1 1545 1545 PEG PEG . G 4 NAG A 1 1546 1546 NAG NAG . H 5 PEG A 1 1547 1547 PEG PEG . I 5 PEG A 1 1548 1548 PEG PEG . J 6 P6G B 1 1546 1546 P6G P6G . K 2 ZN4 B 1 600 600 ZN4 ZN4 . L 5 PEG B 1 1544 1544 PEG PEG . M 3 SO4 B 1 1545 1545 SO4 SO4 . N 5 PEG B 1 1547 1547 PEG PEG . O 5 PEG B 1 1548 1548 PEG PEG . P 4 NAG B 1 1549 1549 NAG NAG . Q 5 PEG B 1 1550 1550 PEG PEG . R 5 PEG B 1 1551 1551 PEG PEG . S 7 HOH A 1 2001 2001 HOH HOH . S 7 HOH A 2 2002 2002 HOH HOH . S 7 HOH A 3 2003 2003 HOH HOH . S 7 HOH A 4 2004 2004 HOH HOH . S 7 HOH A 5 2005 2005 HOH HOH . S 7 HOH A 6 2006 2006 HOH HOH . S 7 HOH A 7 2007 2007 HOH HOH . S 7 HOH A 8 2008 2008 HOH HOH . S 7 HOH A 9 2009 2009 HOH HOH . S 7 HOH A 10 2010 2010 HOH HOH . S 7 HOH A 11 2011 2011 HOH HOH . S 7 HOH A 12 2012 2012 HOH HOH . S 7 HOH A 13 2013 2013 HOH HOH . S 7 HOH A 14 2014 2014 HOH HOH . S 7 HOH A 15 2015 2015 HOH HOH . S 7 HOH A 16 2016 2016 HOH HOH . S 7 HOH A 17 2017 2017 HOH HOH . S 7 HOH A 18 2018 2018 HOH HOH . S 7 HOH A 19 2019 2019 HOH HOH . S 7 HOH A 20 2020 2020 HOH HOH . S 7 HOH A 21 2021 2021 HOH HOH . S 7 HOH A 22 2022 2022 HOH HOH . S 7 HOH A 23 2023 2023 HOH HOH . S 7 HOH A 24 2024 2024 HOH HOH . S 7 HOH A 25 2025 2025 HOH HOH . S 7 HOH A 26 2026 2026 HOH HOH . S 7 HOH A 27 2027 2027 HOH HOH . S 7 HOH A 28 2028 2028 HOH HOH . S 7 HOH A 29 2029 2029 HOH HOH . S 7 HOH A 30 2030 2030 HOH HOH . S 7 HOH A 31 2031 2031 HOH HOH . S 7 HOH A 32 2032 2032 HOH HOH . S 7 HOH A 33 2033 2033 HOH HOH . S 7 HOH A 34 2034 2034 HOH HOH . S 7 HOH A 35 2035 2035 HOH HOH . S 7 HOH A 36 2036 2036 HOH HOH . S 7 HOH A 37 2037 2037 HOH HOH . S 7 HOH A 38 2038 2038 HOH HOH . S 7 HOH A 39 2039 2039 HOH HOH . S 7 HOH A 40 2040 2040 HOH HOH . S 7 HOH A 41 2041 2041 HOH HOH . S 7 HOH A 42 2042 2042 HOH HOH . S 7 HOH A 43 2043 2043 HOH HOH . S 7 HOH A 44 2044 2044 HOH HOH . S 7 HOH A 45 2045 2045 HOH HOH . S 7 HOH A 46 2046 2046 HOH HOH . S 7 HOH A 47 2047 2047 HOH HOH . S 7 HOH A 48 2048 2048 HOH HOH . S 7 HOH A 49 2049 2049 HOH HOH . S 7 HOH A 50 2050 2050 HOH HOH . S 7 HOH A 51 2051 2051 HOH HOH . S 7 HOH A 52 2052 2052 HOH HOH . S 7 HOH A 53 2053 2053 HOH HOH . S 7 HOH A 54 2054 2054 HOH HOH . S 7 HOH A 55 2055 2055 HOH HOH . S 7 HOH A 56 2056 2056 HOH HOH . S 7 HOH A 57 2057 2057 HOH HOH . S 7 HOH A 58 2058 2058 HOH HOH . S 7 HOH A 59 2059 2059 HOH HOH . S 7 HOH A 60 2060 2060 HOH HOH . S 7 HOH A 61 2061 2061 HOH HOH . S 7 HOH A 62 2062 2062 HOH HOH . S 7 HOH A 63 2063 2063 HOH HOH . S 7 HOH A 64 2064 2064 HOH HOH . S 7 HOH A 65 2065 2065 HOH HOH . S 7 HOH A 66 2066 2066 HOH HOH . S 7 HOH A 67 2067 2067 HOH HOH . S 7 HOH A 68 2068 2068 HOH HOH . S 7 HOH A 69 2069 2069 HOH HOH . S 7 HOH A 70 2070 2070 HOH HOH . S 7 HOH A 71 2071 2071 HOH HOH . S 7 HOH A 72 2072 2072 HOH HOH . S 7 HOH A 73 2073 2073 HOH HOH . S 7 HOH A 74 2074 2074 HOH HOH . S 7 HOH A 75 2075 2075 HOH HOH . S 7 HOH A 76 2076 2076 HOH HOH . S 7 HOH A 77 2077 2077 HOH HOH . S 7 HOH A 78 2078 2078 HOH HOH . S 7 HOH A 79 2079 2079 HOH HOH . S 7 HOH A 80 2080 2080 HOH HOH . S 7 HOH A 81 2081 2081 HOH HOH . S 7 HOH A 82 2082 2082 HOH HOH . S 7 HOH A 83 2083 2083 HOH HOH . S 7 HOH A 84 2084 2084 HOH HOH . S 7 HOH A 85 2085 2085 HOH HOH . S 7 HOH A 86 2086 2086 HOH HOH . S 7 HOH A 87 2087 2087 HOH HOH . S 7 HOH A 88 2088 2088 HOH HOH . S 7 HOH A 89 2089 2089 HOH HOH . S 7 HOH A 90 2090 2090 HOH HOH . S 7 HOH A 91 2091 2091 HOH HOH . S 7 HOH A 92 2092 2092 HOH HOH . S 7 HOH A 93 2093 2093 HOH HOH . S 7 HOH A 94 2094 2094 HOH HOH . S 7 HOH A 95 2095 2095 HOH HOH . S 7 HOH A 96 2096 2096 HOH HOH . S 7 HOH A 97 2097 2097 HOH HOH . S 7 HOH A 98 2098 2098 HOH HOH . S 7 HOH A 99 2099 2099 HOH HOH . S 7 HOH A 100 2100 2100 HOH HOH . S 7 HOH A 101 2101 2101 HOH HOH . S 7 HOH A 102 2102 2102 HOH HOH . S 7 HOH A 103 2103 2103 HOH HOH . S 7 HOH A 104 2104 2104 HOH HOH . T 7 HOH B 1 2001 2001 HOH HOH . T 7 HOH B 2 2002 2002 HOH HOH . T 7 HOH B 3 2003 2003 HOH HOH . T 7 HOH B 4 2004 2004 HOH HOH . T 7 HOH B 5 2005 2005 HOH HOH . T 7 HOH B 6 2006 2006 HOH HOH . T 7 HOH B 7 2007 2007 HOH HOH . T 7 HOH B 8 2008 2008 HOH HOH . T 7 HOH B 9 2009 2009 HOH HOH . T 7 HOH B 10 2010 2010 HOH HOH . T 7 HOH B 11 2011 2011 HOH HOH . T 7 HOH B 12 2012 2012 HOH HOH . T 7 HOH B 13 2013 2013 HOH HOH . T 7 HOH B 14 2014 2014 HOH HOH . T 7 HOH B 15 2015 2015 HOH HOH . T 7 HOH B 16 2016 2016 HOH HOH . T 7 HOH B 17 2017 2017 HOH HOH . T 7 HOH B 18 2018 2018 HOH HOH . T 7 HOH B 19 2019 2019 HOH HOH . T 7 HOH B 20 2020 2020 HOH HOH . T 7 HOH B 21 2021 2021 HOH HOH . T 7 HOH B 22 2022 2022 HOH HOH . T 7 HOH B 23 2023 2023 HOH HOH . T 7 HOH B 24 2024 2024 HOH HOH . T 7 HOH B 25 2025 2025 HOH HOH . T 7 HOH B 26 2026 2026 HOH HOH . T 7 HOH B 27 2027 2027 HOH HOH . T 7 HOH B 28 2028 2028 HOH HOH . T 7 HOH B 29 2029 2029 HOH HOH . T 7 HOH B 30 2030 2030 HOH HOH . T 7 HOH B 31 2031 2031 HOH HOH . T 7 HOH B 32 2032 2032 HOH HOH . T 7 HOH B 33 2033 2033 HOH HOH . T 7 HOH B 34 2034 2034 HOH HOH . T 7 HOH B 35 2035 2035 HOH HOH . T 7 HOH B 36 2036 2036 HOH HOH . T 7 HOH B 37 2037 2037 HOH HOH . T 7 HOH B 38 2038 2038 HOH HOH . T 7 HOH B 39 2039 2039 HOH HOH . T 7 HOH B 40 2040 2040 HOH HOH . T 7 HOH B 41 2041 2041 HOH HOH . T 7 HOH B 42 2042 2042 HOH HOH . T 7 HOH B 43 2043 2043 HOH HOH . T 7 HOH B 44 2044 2044 HOH HOH . T 7 HOH B 45 2045 2045 HOH HOH . T 7 HOH B 46 2046 2046 HOH HOH . T 7 HOH B 47 2047 2047 HOH HOH . T 7 HOH B 48 2048 2048 HOH HOH . T 7 HOH B 49 2049 2049 HOH HOH . T 7 HOH B 50 2050 2050 HOH HOH . T 7 HOH B 51 2051 2051 HOH HOH . T 7 HOH B 52 2052 2052 HOH HOH . T 7 HOH B 53 2053 2053 HOH HOH . T 7 HOH B 54 2054 2054 HOH HOH . T 7 HOH B 55 2055 2055 HOH HOH . T 7 HOH B 56 2056 2056 HOH HOH . T 7 HOH B 57 2057 2057 HOH HOH . T 7 HOH B 58 2058 2058 HOH HOH . T 7 HOH B 59 2059 2059 HOH HOH . T 7 HOH B 60 2060 2060 HOH HOH . T 7 HOH B 61 2061 2061 HOH HOH . T 7 HOH B 62 2062 2062 HOH HOH . T 7 HOH B 63 2063 2063 HOH HOH . T 7 HOH B 64 2064 2064 HOH HOH . T 7 HOH B 65 2065 2065 HOH HOH . T 7 HOH B 66 2066 2066 HOH HOH . T 7 HOH B 67 2067 2067 HOH HOH . T 7 HOH B 68 2068 2068 HOH HOH . T 7 HOH B 69 2069 2069 HOH HOH . T 7 HOH B 70 2070 2070 HOH HOH . T 7 HOH B 71 2071 2071 HOH HOH . T 7 HOH B 72 2072 2072 HOH HOH . T 7 HOH B 73 2073 2073 HOH HOH . T 7 HOH B 74 2074 2074 HOH HOH . T 7 HOH B 75 2075 2075 HOH HOH . T 7 HOH B 76 2076 2076 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . P 4 5.603 -17.369 -22.144 1 89.02 ? C1 NAG 1549 B 1 HETATM 2 C C2 NAG . . . P 4 5.8 -18.309 -20.949 1 99.15 ? C2 NAG 1549 B 1 HETATM 3 C C3 NAG . . . P 4 7.13 -19.064 -20.967 1 102.89 ? C3 NAG 1549 B 1 HETATM 4 C C4 NAG . . . P 4 7.592 -19.51 -22.352 1 104 ? C4 NAG 1549 B 1 HETATM 5 C C5 NAG . . . P 4 7.343 -18.451 -23.422 1 100.87 ? C5 NAG 1549 B 1 HETATM 6 C C6 NAG . . . P 4 7.648 -19 -24.822 1 95.68 ? C6 NAG 1549 B 1 HETATM 7 C C7 NAG . . . P 4 4.792 -17.82 -18.748 1 101.71 ? C7 NAG 1549 B 1 HETATM 8 C C8 NAG . . . P 4 4.185 -19.195 -18.717 1 97.75 ? C8 NAG 1549 B 1 HETATM 9 N N2 NAG . . . P 4 5.699 -17.568 -19.696 1 102.37 ? N2 NAG 1549 B 1 HETATM 10 O O3 NAG . . . P 4 7.002 -20.21 -20.153 1 103.67 ? O3 NAG 1549 B 1 HETATM 11 O O4 NAG . . . P 4 8.975 -19.806 -22.311 1 103.77 ? O4 NAG 1549 B 1 HETATM 12 O O5 NAG . . . P 4 6.015 -17.96 -23.365 1 97.94 ? O5 NAG 1549 B 1 HETATM 13 O O6 NAG . . . P 4 6.838 -20.114 -25.137 1 91.24 ? O6 NAG 1549 B 1 HETATM 14 O O7 NAG . . . P 4 4.457 -16.97 -17.922 1 102.4 ? O7 NAG 1549 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #