data_4B8Z
#
_model_server_result.job_id            tgNP0HYn7wCj01oQ0KTn-g 
_model_server_result.datetime_utc      '2024-10-12 22:13:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4b8z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":900}' 
#
_entry.id    4B8Z 
#
_exptl.entry_id    4B8Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4B8Z 
_cell.length_a            91.447 
_cell.length_b            91.447 
_cell.length_c            429.13 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4B8Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,M 1 1 
B,G,H,N 2 1 
C,I,J,O 3 1 
D,K,L,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 282 n n 
PA O2A NAP sing 283 n n 
PA O5B NAP sing 284 n n 
PA O3 NAP sing 285 n n 
O2A HOA2 NAP sing 286 n n 
O5B C5B NAP sing 287 n n 
C5B C4B NAP sing 288 n n 
C5B H51A NAP sing 289 n n 
C5B H52A NAP sing 290 n n 
C4B O4B NAP sing 291 n n 
C4B C3B NAP sing 292 n n 
C4B H4B NAP sing 293 n n 
O4B C1B NAP sing 294 n n 
C3B O3B NAP sing 295 n n 
C3B C2B NAP sing 296 n n 
C3B H3B NAP sing 297 n n 
O3B HO3A NAP sing 298 n n 
C2B O2B NAP sing 299 n n 
C2B C1B NAP sing 300 n n 
C2B H2B NAP sing 301 n n 
O2B P2B NAP sing 302 n n 
C1B N9A NAP sing 303 n n 
C1B H1B NAP sing 304 n n 
N9A C8A NAP sing 305 n y 
N9A C4A NAP sing 306 n y 
C8A N7A NAP doub 307 n y 
C8A H8A NAP sing 308 n n 
N7A C5A NAP sing 309 n y 
C5A C6A NAP sing 310 n y 
C5A C4A NAP doub 311 n y 
C6A N6A NAP sing 312 n n 
C6A N1A NAP doub 313 n y 
N6A H61A NAP sing 314 n n 
N6A H62A NAP sing 315 n n 
N1A C2A NAP sing 316 n y 
C2A N3A NAP doub 317 n y 
C2A H2A NAP sing 318 n n 
N3A C4A NAP sing 319 n y 
O3 PN NAP sing 320 n n 
PN O1N NAP doub 321 n n 
PN O2N NAP sing 322 n n 
PN O5D NAP sing 323 n n 
O5D C5D NAP sing 324 n n 
C5D C4D NAP sing 325 n n 
C5D H51N NAP sing 326 n n 
C5D H52N NAP sing 327 n n 
C4D O4D NAP sing 328 n n 
C4D C3D NAP sing 329 n n 
C4D H4D NAP sing 330 n n 
O4D C1D NAP sing 331 n n 
C3D O3D NAP sing 332 n n 
C3D C2D NAP sing 333 n n 
C3D H3D NAP sing 334 n n 
O3D HO3N NAP sing 335 n n 
C2D O2D NAP sing 336 n n 
C2D C1D NAP sing 337 n n 
C2D H2D NAP sing 338 n n 
O2D HO2N NAP sing 339 n n 
C1D N1N NAP sing 340 n n 
C1D H1D NAP sing 341 n n 
N1N C2N NAP sing 342 n y 
N1N C6N NAP doub 343 n y 
C2N C3N NAP doub 344 n y 
C2N H2N NAP sing 345 n n 
C3N C7N NAP sing 346 n n 
C3N C4N NAP sing 347 n y 
C7N O7N NAP doub 348 n n 
C7N N7N NAP sing 349 n n 
N7N H71N NAP sing 350 n n 
N7N H72N NAP sing 351 n n 
C4N C5N NAP doub 352 n y 
C4N H4N NAP sing 353 n n 
C5N C6N NAP sing 354 n y 
C5N H5N NAP sing 355 n n 
C6N H6N NAP sing 356 n n 
P2B O1X NAP doub 357 n n 
P2B O2X NAP sing 358 n n 
P2B O3X NAP sing 359 n n 
O2X HOP2 NAP sing 360 n n 
O3X HOP3 NAP sing 361 n n 
#
_atom_sites.entry_id                     4B8Z 
_atom_sites.fract_transf_matrix[1][1]    0.010935 
_atom_sites.fract_transf_matrix[1][2]    0.006313 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012627 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00233 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAP A 1 900 900 NAP NAP . 
F 3 GDP A 1 901 901 GDP GDP . 
G 2 NAP B 1 900 900 NAP NAP . 
H 3 GDP B 1 901 901 GDP GDP . 
I 2 NAP C 1 900 900 NAP NAP . 
J 3 GDP C 1 901 901 GDP GDP . 
K 2 NAP D 1 900 900 NAP NAP . 
L 3 GDP D 1 901 901 GDP GDP . 
M 4 HOH A 1 2001 2001 HOH HOH . 
M 4 HOH A 2 2002 2002 HOH HOH . 
M 4 HOH A 3 2003 2003 HOH HOH . 
N 4 HOH B 1 2001 2001 HOH HOH . 
N 4 HOH B 2 2002 2002 HOH HOH . 
N 4 HOH B 3 2003 2003 HOH HOH . 
N 4 HOH B 4 2004 2004 HOH HOH . 
N 4 HOH B 5 2005 2005 HOH HOH . 
N 4 HOH B 6 2006 2006 HOH HOH . 
N 4 HOH B 7 2007 2007 HOH HOH . 
O 4 HOH C 1 2001 2001 HOH HOH . 
O 4 HOH C 2 2002 2002 HOH HOH . 
O 4 HOH C 3 2003 2003 HOH HOH . 
O 4 HOH C 4 2004 2004 HOH HOH . 
O 4 HOH C 5 2005 2005 HOH HOH . 
P 4 HOH D 1 2001 2001 HOH HOH . 
P 4 HOH D 2 2002 2002 HOH HOH . 
P 4 HOH D 3 2003 2003 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . E 2 33.823 6.15 -20.748 1 98.34 ? PA NAP 900 A 1 
HETATM 2 O O1A NAP . . . E 2 34.332 5.412 -21.93 1 99.08 ? O1A NAP 900 A 1 
HETATM 3 O O2A NAP . . . E 2 34.626 5.749 -19.509 1 98.86 ? O2A NAP 900 A 1 
HETATM 4 O O5B NAP . . . E 2 33.946 7.7 -20.988 1 98.99 ? O5B NAP 900 A 1 
HETATM 5 C C5B NAP . . . E 2 33.808 8.652 -19.915 1 98.7 ? C5B NAP 900 A 1 
HETATM 6 C C4B NAP . . . E 2 34.429 9.957 -20.345 1 101.36 ? C4B NAP 900 A 1 
HETATM 7 O O4B NAP . . . E 2 34.33 10.925 -19.273 1 101.12 ? O4B NAP 900 A 1 
HETATM 8 C C3B NAP . . . E 2 35.909 9.895 -20.729 1 104.61 ? C3B NAP 900 A 1 
HETATM 9 O O3B NAP . . . E 2 36.116 10.528 -21.986 1 107.16 ? O3B NAP 900 A 1 
HETATM 10 C C2B NAP . . . E 2 36.612 10.621 -19.587 1 104.74 ? C2B NAP 900 A 1 
HETATM 11 O O2B NAP . . . E 2 37.877 11.214 -19.946 1 107.97 ? O2B NAP 900 A 1 
HETATM 12 C C1B NAP . . . E 2 35.551 11.63 -19.177 1 102.68 ? C1B NAP 900 A 1 
HETATM 13 N N9A NAP . . . E 2 35.684 12.18 -17.828 1 100.35 ? N9A NAP 900 A 1 
HETATM 14 C C8A NAP . . . E 2 35.753 11.488 -16.647 1 97.69 ? C8A NAP 900 A 1 
HETATM 15 N N7A NAP . . . E 2 35.928 12.247 -15.592 1 96.57 ? N7A NAP 900 A 1 
HETATM 16 C C5A NAP . . . E 2 35.974 13.53 -16.115 1 97.88 ? C5A NAP 900 A 1 
HETATM 17 C C6A NAP . . . E 2 36.165 14.793 -15.518 1 99.28 ? C6A NAP 900 A 1 
HETATM 18 N N6A NAP . . . E 2 36.333 14.975 -14.206 1 99.66 ? N6A NAP 900 A 1 
HETATM 19 N N1A NAP . . . E 2 36.183 15.876 -16.329 1 100.63 ? N1A NAP 900 A 1 
HETATM 20 C C2A NAP . . . E 2 36.013 15.7 -17.645 1 101.03 ? C2A NAP 900 A 1 
HETATM 21 N N3A NAP . . . E 2 35.825 14.562 -18.319 1 100.44 ? N3A NAP 900 A 1 
HETATM 22 C C4A NAP . . . E 2 35.819 13.505 -17.492 1 99.58 ? C4A NAP 900 A 1 
HETATM 23 O O3 NAP . . . E 2 32.278 5.793 -20.518 1 97.81 ? O3 NAP 900 A 1 
HETATM 24 P PN NAP . . . E 2 31.047 5.873 -21.541 1 99.53 ? PN NAP 900 A 1 
HETATM 25 O O1N NAP . . . E 2 30.357 4.564 -21.542 1 98.52 ? O1N NAP 900 A 1 
HETATM 26 O O2N NAP . . . E 2 31.55 6.415 -22.824 1 102.66 ? O2N NAP 900 A 1 
HETATM 27 O O5D NAP . . . E 2 30.101 6.915 -20.79 1 98.96 ? O5D NAP 900 A 1 
HETATM 28 C C5D NAP . . . E 2 29.606 8.117 -21.423 1 100.6 ? C5D NAP 900 A 1 
HETATM 29 C C4D NAP . . . E 2 28.174 8.352 -21.006 1 99.62 ? C4D NAP 900 A 1 
HETATM 30 O O4D NAP . . . E 2 27.367 7.216 -21.392 1 99.05 ? O4D NAP 900 A 1 
HETATM 31 C C3D NAP . . . E 2 27.935 8.549 -19.509 1 98.03 ? C3D NAP 900 A 1 
HETATM 32 O O3D NAP . . . E 2 27.278 9.784 -19.241 1 97.53 ? O3D NAP 900 A 1 
HETATM 33 C C2D NAP . . . E 2 27.095 7.324 -19.139 1 96.56 ? C2D NAP 900 A 1 
HETATM 34 O O2D NAP . . . E 2 26.073 7.634 -18.199 1 96.3 ? O2D NAP 900 A 1 
HETATM 35 C C1D NAP . . . E 2 26.38 6.987 -20.45 1 96.48 ? C1D NAP 900 A 1 
HETATM 36 N N1N NAP . . . E 2 25.897 5.526 -20.507 1 94.72 ? N1N NAP 900 A 1 
HETATM 37 C C2N NAP . . . E 2 26.795 4.485 -20.838 1 95.03 ? C2N NAP 900 A 1 
HETATM 38 C C3N NAP . . . E 2 26.36 3.17 -20.863 1 94.3 ? C3N NAP 900 A 1 
HETATM 39 C C7N NAP . . . E 2 27.309 2.039 -21.184 1 95.23 ? C7N NAP 900 A 1 
HETATM 40 O O7N NAP . . . E 2 26.89 0.86 -21.18 1 94.23 ? O7N NAP 900 A 1 
HETATM 41 N N7N NAP . . . E 2 28.58 2.343 -21.452 1 97.45 ? N7N NAP 900 A 1 
HETATM 42 C C4N NAP . . . E 2 25.026 2.903 -20.568 1 93.43 ? C4N NAP 900 A 1 
HETATM 43 C C5N NAP . . . E 2 24.154 3.935 -20.257 1 93.04 ? C5N NAP 900 A 1 
HETATM 44 C C6N NAP . . . E 2 24.611 5.245 -20.229 1 93.74 ? C6N NAP 900 A 1 
HETATM 45 P P2B NAP . . . E 2 39.316 10.601 -19.565 1 110.74 ? P2B NAP 900 A 1 
HETATM 46 O O1X NAP . . . E 2 39.731 9.274 -20.113 1 111.38 ? O1X NAP 900 A 1 
HETATM 47 O O2X NAP . . . E 2 40.201 11.756 -20.032 1 114.89 ? O2X NAP 900 A 1 
HETATM 48 O O3X NAP . . . E 2 39.259 10.627 -18.029 1 109.7 ? O3X NAP 900 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#