data_4B8Z
#
_model_server_result.job_id            byXscUTmcAiq1_EnIyZUDQ 
_model_server_result.datetime_utc      '2024-10-12 22:13:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4b8z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":900}' 
#
_entry.id    4B8Z 
#
_exptl.entry_id    4B8Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4B8Z 
_cell.length_a            91.447 
_cell.length_b            91.447 
_cell.length_c            429.13 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4B8Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,M 1 1 
B,G,H,N 2 1 
C,I,J,O 3 1 
D,K,L,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 282 n n 
PA O2A NAP sing 283 n n 
PA O5B NAP sing 284 n n 
PA O3 NAP sing 285 n n 
O2A HOA2 NAP sing 286 n n 
O5B C5B NAP sing 287 n n 
C5B C4B NAP sing 288 n n 
C5B H51A NAP sing 289 n n 
C5B H52A NAP sing 290 n n 
C4B O4B NAP sing 291 n n 
C4B C3B NAP sing 292 n n 
C4B H4B NAP sing 293 n n 
O4B C1B NAP sing 294 n n 
C3B O3B NAP sing 295 n n 
C3B C2B NAP sing 296 n n 
C3B H3B NAP sing 297 n n 
O3B HO3A NAP sing 298 n n 
C2B O2B NAP sing 299 n n 
C2B C1B NAP sing 300 n n 
C2B H2B NAP sing 301 n n 
O2B P2B NAP sing 302 n n 
C1B N9A NAP sing 303 n n 
C1B H1B NAP sing 304 n n 
N9A C8A NAP sing 305 n y 
N9A C4A NAP sing 306 n y 
C8A N7A NAP doub 307 n y 
C8A H8A NAP sing 308 n n 
N7A C5A NAP sing 309 n y 
C5A C6A NAP sing 310 n y 
C5A C4A NAP doub 311 n y 
C6A N6A NAP sing 312 n n 
C6A N1A NAP doub 313 n y 
N6A H61A NAP sing 314 n n 
N6A H62A NAP sing 315 n n 
N1A C2A NAP sing 316 n y 
C2A N3A NAP doub 317 n y 
C2A H2A NAP sing 318 n n 
N3A C4A NAP sing 319 n y 
O3 PN NAP sing 320 n n 
PN O1N NAP doub 321 n n 
PN O2N NAP sing 322 n n 
PN O5D NAP sing 323 n n 
O5D C5D NAP sing 324 n n 
C5D C4D NAP sing 325 n n 
C5D H51N NAP sing 326 n n 
C5D H52N NAP sing 327 n n 
C4D O4D NAP sing 328 n n 
C4D C3D NAP sing 329 n n 
C4D H4D NAP sing 330 n n 
O4D C1D NAP sing 331 n n 
C3D O3D NAP sing 332 n n 
C3D C2D NAP sing 333 n n 
C3D H3D NAP sing 334 n n 
O3D HO3N NAP sing 335 n n 
C2D O2D NAP sing 336 n n 
C2D C1D NAP sing 337 n n 
C2D H2D NAP sing 338 n n 
O2D HO2N NAP sing 339 n n 
C1D N1N NAP sing 340 n n 
C1D H1D NAP sing 341 n n 
N1N C2N NAP sing 342 n y 
N1N C6N NAP doub 343 n y 
C2N C3N NAP doub 344 n y 
C2N H2N NAP sing 345 n n 
C3N C7N NAP sing 346 n n 
C3N C4N NAP sing 347 n y 
C7N O7N NAP doub 348 n n 
C7N N7N NAP sing 349 n n 
N7N H71N NAP sing 350 n n 
N7N H72N NAP sing 351 n n 
C4N C5N NAP doub 352 n y 
C4N H4N NAP sing 353 n n 
C5N C6N NAP sing 354 n y 
C5N H5N NAP sing 355 n n 
C6N H6N NAP sing 356 n n 
P2B O1X NAP doub 357 n n 
P2B O2X NAP sing 358 n n 
P2B O3X NAP sing 359 n n 
O2X HOP2 NAP sing 360 n n 
O3X HOP3 NAP sing 361 n n 
#
_atom_sites.entry_id                     4B8Z 
_atom_sites.fract_transf_matrix[1][1]    0.010935 
_atom_sites.fract_transf_matrix[1][2]    0.006313 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012627 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00233 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAP A 1 900 900 NAP NAP . 
F 3 GDP A 1 901 901 GDP GDP . 
G 2 NAP B 1 900 900 NAP NAP . 
H 3 GDP B 1 901 901 GDP GDP . 
I 2 NAP C 1 900 900 NAP NAP . 
J 3 GDP C 1 901 901 GDP GDP . 
K 2 NAP D 1 900 900 NAP NAP . 
L 3 GDP D 1 901 901 GDP GDP . 
M 4 HOH A 1 2001 2001 HOH HOH . 
M 4 HOH A 2 2002 2002 HOH HOH . 
M 4 HOH A 3 2003 2003 HOH HOH . 
N 4 HOH B 1 2001 2001 HOH HOH . 
N 4 HOH B 2 2002 2002 HOH HOH . 
N 4 HOH B 3 2003 2003 HOH HOH . 
N 4 HOH B 4 2004 2004 HOH HOH . 
N 4 HOH B 5 2005 2005 HOH HOH . 
N 4 HOH B 6 2006 2006 HOH HOH . 
N 4 HOH B 7 2007 2007 HOH HOH . 
O 4 HOH C 1 2001 2001 HOH HOH . 
O 4 HOH C 2 2002 2002 HOH HOH . 
O 4 HOH C 3 2003 2003 HOH HOH . 
O 4 HOH C 4 2004 2004 HOH HOH . 
O 4 HOH C 5 2005 2005 HOH HOH . 
P 4 HOH D 1 2001 2001 HOH HOH . 
P 4 HOH D 2 2002 2002 HOH HOH . 
P 4 HOH D 3 2003 2003 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . K 2 12.229 32.71 -64.144 1 94.43 ? PA NAP 900 D 1 
HETATM 2 O O1A NAP . . . K 2 11.601 31.979 -63.018 1 95.08 ? O1A NAP 900 D 1 
HETATM 3 O O2A NAP . . . K 2 11.534 32.327 -65.454 1 93.47 ? O2A NAP 900 D 1 
HETATM 4 O O5B NAP . . . K 2 12.103 34.268 -63.902 1 95.58 ? O5B NAP 900 D 1 
HETATM 5 C C5B NAP . . . K 2 12.105 35.236 -64.974 1 95.1 ? C5B NAP 900 D 1 
HETATM 6 C C4B NAP . . . K 2 11.539 36.545 -64.475 1 97.24 ? C4B NAP 900 D 1 
HETATM 7 O O4B NAP . . . K 2 11.668 37.558 -65.502 1 96.35 ? O4B NAP 900 D 1 
HETATM 8 C C3B NAP . . . K 2 10.062 36.526 -64.075 1 100.31 ? C3B NAP 900 D 1 
HETATM 9 O O3B NAP . . . K 2 9.875 37.191 -62.83 1 103.16 ? O3B NAP 900 D 1 
HETATM 10 C C2B NAP . . . K 2 9.371 37.26 -65.219 1 100.15 ? C2B NAP 900 D 1 
HETATM 11 O O2B NAP . . . K 2 8.115 37.878 -64.866 1 103.67 ? O2B NAP 900 D 1 
HETATM 12 C C1B NAP . . . K 2 10.445 38.257 -65.634 1 97.54 ? C1B NAP 900 D 1 
HETATM 13 N N9A NAP . . . K 2 10.323 38.765 -67 1 93.83 ? N9A NAP 900 D 1 
HETATM 14 C C8A NAP . . . K 2 10.349 38.043 -68.165 1 91.02 ? C8A NAP 900 D 1 
HETATM 15 N N7A NAP . . . K 2 10.098 38.75 -69.24 1 90.24 ? N7A NAP 900 D 1 
HETATM 16 C C5A NAP . . . K 2 9.902 40.032 -68.75 1 91.92 ? C5A NAP 900 D 1 
HETATM 17 C C6A NAP . . . K 2 9.573 41.251 -69.382 1 93.72 ? C6A NAP 900 D 1 
HETATM 18 N N6A NAP . . . K 2 9.327 41.367 -70.689 1 93.68 ? N6A NAP 900 D 1 
HETATM 19 N N1A NAP . . . K 2 9.453 42.35 -68.601 1 95.53 ? N1A NAP 900 D 1 
HETATM 20 C C2A NAP . . . K 2 9.636 42.227 -67.281 1 96 ? C2A NAP 900 D 1 
HETATM 21 N N3A NAP . . . K 2 9.933 41.132 -66.574 1 94.87 ? N3A NAP 900 D 1 
HETATM 22 C C4A NAP . . . K 2 10.052 40.06 -67.373 1 93.34 ? C4A NAP 900 D 1 
HETATM 23 O O3 NAP . . . K 2 13.78 32.315 -64.231 1 94.18 ? O3 NAP 900 D 1 
HETATM 24 P PN NAP . . . K 2 15.016 32.727 -63.296 1 95.85 ? PN NAP 900 D 1 
HETATM 25 O O1N NAP . . . K 2 16.075 31.7 -63.418 1 92.59 ? O1N NAP 900 D 1 
HETATM 26 O O2N NAP . . . K 2 14.486 33.059 -61.954 1 99.6 ? O2N NAP 900 D 1 
HETATM 27 O O5D NAP . . . K 2 15.534 34.039 -64.034 1 97.42 ? O5D NAP 900 D 1 
HETATM 28 C C5D NAP . . . K 2 16.34 35.008 -63.331 1 100.35 ? C5D NAP 900 D 1 
HETATM 29 C C4D NAP . . . K 2 17.728 35.047 -63.921 1 100.9 ? C4D NAP 900 D 1 
HETATM 30 O O4D NAP . . . K 2 18.411 33.806 -63.639 1 101.65 ? O4D NAP 900 D 1 
HETATM 31 C C3D NAP . . . K 2 17.812 35.226 -65.436 1 99.84 ? C3D NAP 900 D 1 
HETATM 32 O O3D NAP . . . K 2 18.458 36.454 -65.756 1 99.94 ? O3D NAP 900 D 1 
HETATM 33 C C2D NAP . . . K 2 18.602 33.99 -65.871 1 98.72 ? C2D NAP 900 D 1 
HETATM 34 O O2D NAP . . . K 2 19.552 34.29 -66.886 1 98.1 ? O2D NAP 900 D 1 
HETATM 35 C C1D NAP . . . K 2 19.387 33.641 -64.597 1 99.57 ? C1D NAP 900 D 1 
HETATM 36 N N1N NAP . . . K 2 19.929 32.204 -64.53 1 99.75 ? N1N NAP 900 D 1 
HETATM 37 C C2N NAP . . . K 2 19.045 31.118 -64.426 1 101.5 ? C2N NAP 900 D 1 
HETATM 38 C C3N NAP . . . K 2 19.534 29.826 -64.34 1 102.2 ? C3N NAP 900 D 1 
HETATM 39 C C7N NAP . . . K 2 18.599 28.66 -64.133 1 105.14 ? C7N NAP 900 D 1 
HETATM 40 O O7N NAP . . . K 2 19.058 27.499 -64.104 1 104.98 ? O7N NAP 900 D 1 
HETATM 41 N N7N NAP . . . K 2 17.295 28.918 -63.998 1 107.89 ? N7N NAP 900 D 1 
HETATM 42 C C4N NAP . . . K 2 20.911 29.63 -64.377 1 100.14 ? C4N NAP 900 D 1 
HETATM 43 C C5N NAP . . . K 2 21.771 30.712 -64.472 1 98.45 ? C5N NAP 900 D 1 
HETATM 44 C C6N NAP . . . K 2 21.259 31.997 -64.545 1 98.99 ? C6N NAP 900 D 1 
HETATM 45 P P2B NAP . . . K 2 6.691 37.526 -65.54 1 106.21 ? P2B NAP 900 D 1 
HETATM 46 O O1X NAP . . . K 2 6.056 36.199 -65.306 1 106.37 ? O1X NAP 900 D 1 
HETATM 47 O O2X NAP . . . K 2 5.873 38.692 -65.001 1 110.31 ? O2X NAP 900 D 1 
HETATM 48 O O3X NAP . . . K 2 6.976 37.795 -67.031 1 104.78 ? O3X NAP 900 D 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           48 
#