data_4B99
#
_model_server_result.job_id            h9wFCaHl1W4ibkpYn9WB0Q 
_model_server_result.datetime_utc      '2024-11-26 11:17:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4b99 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1394}' 
#
_entry.id    4B99 
#
_exptl.entry_id    4B99 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              624.776 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            11-cyclopentyl-2-[[2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]carbonyl-phenyl]amino]-5-methyl-pyrimido[4,5-b][1,4]benzodiazepin-6-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4B99 
_cell.length_a            95.15 
_cell.length_b            95.15 
_cell.length_c            119.45 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4B99 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C35 H44 N8 O3' 
_chem_comp.formula_weight    624.776 
_chem_comp.id                R4L 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              11-cyclopentyl-2-[[2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]carbonyl-phenyl]amino]-5-methyl-pyrimido[4,5-b][1,4]benzodiazepin-6-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAP CAN R4L sing 277 n n 
CAP CBO R4L sing 278 n n 
CAN CAO R4L sing 279 n n 
CAO CAQ R4L sing 280 n n 
CAQ CBO R4L sing 281 n n 
CBO NBT R4L sing 282 n n 
NBT CBK R4L sing 283 n n 
NBT C4 R4L sing 284 n n 
CBK CAK R4L sing 285 n y 
CBK CBJ R4L doub 286 n y 
CAK CAG R4L doub 287 n y 
CAG CAF R4L sing 288 n y 
CAF CAJ R4L doub 289 n y 
CAJ CBJ R4L sing 290 n y 
CBJ CBI R4L sing 291 n n 
CBI OAE R4L doub 292 n n 
CBI NBS R4L sing 293 n n 
NBS CAC R4L sing 294 n n 
NBS C5 R4L sing 295 n n 
C5 C6 R4L doub 296 n y 
C5 C4 R4L sing 297 n y 
C6 N1 R4L sing 298 n y 
N1 C2 R4L doub 299 n y 
C4 N3 R4L doub 300 n y 
N3 C2 R4L sing 301 n y 
C2 NBB R4L sing 302 n n 
NBB CBF R4L sing 303 n n 
CBF CBH R4L sing 304 n y 
CBF CAI R4L doub 305 n y 
CBH CAM R4L doub 306 n y 
CBH OBC R4L sing 307 n n 
CAM CBE R4L sing 308 n y 
OBC CAA R4L sing 309 n n 
CAI CAH R4L sing 310 n y 
CAH CBE R4L doub 311 n y 
CBE CBD R4L sing 312 n n 
CBD OAD R4L doub 313 n n 
CBD NBQ R4L sing 314 n n 
NBQ CAU R4L sing 315 n n 
NBQ CAT R4L sing 316 n n 
CAU CAS R4L sing 317 n n 
CAS CBN R4L sing 318 n n 
CAT CAR R4L sing 319 n n 
CAR CBN R4L sing 320 n n 
CBN NBR R4L sing 321 n n 
NBR CAX R4L sing 322 n n 
NBR CAY R4L sing 323 n n 
CAX CAV R4L sing 324 n n 
CAV NBP R4L sing 325 n n 
NBP CAB R4L sing 326 n n 
NBP CAW R4L sing 327 n n 
CAW CAY R4L sing 328 n n 
CAP HAP1 R4L sing 329 n n 
CAP HAP2 R4L sing 330 n n 
CAN HAN1 R4L sing 331 n n 
CAN HAN2 R4L sing 332 n n 
CBO HBO R4L sing 333 n n 
CAO HAO1 R4L sing 334 n n 
CAO HAO2 R4L sing 335 n n 
CAQ HAQ1 R4L sing 336 n n 
CAQ HAQ2 R4L sing 337 n n 
CAK HAK R4L sing 338 n n 
CAG HAG R4L sing 339 n n 
CAF HAF R4L sing 340 n n 
CAJ HAJ R4L sing 341 n n 
CAC HAC1 R4L sing 342 n n 
CAC HAC2 R4L sing 343 n n 
CAC HAC3 R4L sing 344 n n 
C6 H6 R4L sing 345 n n 
NBB HBB R4L sing 346 n n 
CAI HAI R4L sing 347 n n 
CAM HAM R4L sing 348 n n 
CAA HAA1 R4L sing 349 n n 
CAA HAA2 R4L sing 350 n n 
CAA HAA3 R4L sing 351 n n 
CAH HAH R4L sing 352 n n 
CAU HAU1 R4L sing 353 n n 
CAU HAU2 R4L sing 354 n n 
CAT HAT1 R4L sing 355 n n 
CAT HAT2 R4L sing 356 n n 
CAS HAS1 R4L sing 357 n n 
CAS HAS2 R4L sing 358 n n 
CBN HBN R4L sing 359 n n 
CAR HAR1 R4L sing 360 n n 
CAR HAR2 R4L sing 361 n n 
CAX HAX1 R4L sing 362 n n 
CAX HAX2 R4L sing 363 n n 
CAY HAY1 R4L sing 364 n n 
CAY HAY2 R4L sing 365 n n 
CAV HAV1 R4L sing 366 n n 
CAV HAV2 R4L sing 367 n n 
CAB HAB1 R4L sing 368 n n 
CAB HAB2 R4L sing 369 n n 
CAB HAB3 R4L sing 370 n n 
CAW HAW1 R4L sing 371 n n 
CAW HAW2 R4L sing 372 n n 
#
_atom_sites.entry_id                     4B99 
_atom_sites.fract_transf_matrix[1][1]    0.01051 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01051 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008372 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 R4L A 1 1394 1394 R4L R4L . 
C 3 HOH A 1 2001 2001 HOH HOH . 
C 3 HOH A 2 2002 2002 HOH HOH . 
C 3 HOH A 3 2003 2003 HOH HOH . 
C 3 HOH A 4 2004 2004 HOH HOH . 
C 3 HOH A 5 2005 2005 HOH HOH . 
C 3 HOH A 6 2006 2006 HOH HOH . 
C 3 HOH A 7 2007 2007 HOH HOH . 
C 3 HOH A 8 2008 2008 HOH HOH . 
C 3 HOH A 9 2009 2009 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAP R4L . . . B 2 -46.577 1.994 -11.545 1 59.75 ? CAP R4L 1394 A 1 
HETATM 2 C CAN R4L . . . B 2 -46.537 0.788 -10.606 1 55.45 ? CAN R4L 1394 A 1 
HETATM 3 C CAO R4L . . . B 2 -46.369 1.535 -9.278 1 63.69 ? CAO R4L 1394 A 1 
HETATM 4 C CAQ R4L . . . B 2 -45.61 2.828 -9.616 1 55.81 ? CAQ R4L 1394 A 1 
HETATM 5 C CBO R4L . . . B 2 -45.274 2.604 -11.076 1 55.76 ? CBO R4L 1394 A 1 
HETATM 6 N NBT R4L . . . B 2 -44.924 3.79 -11.937 1 52.92 ? NBT R4L 1394 A 1 
HETATM 7 C CBK R4L . . . B 2 -44.63 5.027 -11.5 1 44.71 ? CBK R4L 1394 A 1 
HETATM 8 C CAK R4L . . . B 2 -43.733 5.094 -10.431 1 45.05 ? CAK R4L 1394 A 1 
HETATM 9 C CAG R4L . . . B 2 -43.329 6.323 -9.927 1 40.25 ? CAG R4L 1394 A 1 
HETATM 10 C CAF R4L . . . B 2 -43.787 7.488 -10.514 1 41.46 ? CAF R4L 1394 A 1 
HETATM 11 C CAJ R4L . . . B 2 -44.637 7.43 -11.605 1 45.35 ? CAJ R4L 1394 A 1 
HETATM 12 C CBJ R4L . . . B 2 -45.055 6.198 -12.108 1 43.73 ? CBJ R4L 1394 A 1 
HETATM 13 C CBI R4L . . . B 2 -45.932 6.295 -13.188 1 45.23 ? CBI R4L 1394 A 1 
HETATM 14 O OAE R4L . . . B 2 -46.733 7.241 -13.207 1 38.46 ? OAE R4L 1394 A 1 
HETATM 15 N NBS R4L . . . B 2 -45.966 5.412 -14.212 1 49.21 ? NBS R4L 1394 A 1 
HETATM 16 C CAC R4L . . . B 2 -47.018 5.619 -15.261 1 47.83 ? CAC R4L 1394 A 1 
HETATM 17 C C5 R4L . . . B 2 -45.191 4.31 -14.306 1 47.46 ? C5 R4L 1394 A 1 
HETATM 18 C C6 R4L . . . B 2 -44.837 3.896 -15.591 1 46.68 ? C6 R4L 1394 A 1 
HETATM 19 N N1 R4L . . . B 2 -44.05 2.745 -15.744 1 48.11 ? N1 R4L 1394 A 1 
HETATM 20 C C4 R4L . . . B 2 -44.738 3.548 -13.244 1 49.93 ? C4 R4L 1394 A 1 
HETATM 21 N N3 R4L . . . B 2 -43.967 2.466 -13.453 1 50.94 ? N3 R4L 1394 A 1 
HETATM 22 C C2 R4L . . . B 2 -43.635 2.052 -14.678 1 47.36 ? C2 R4L 1394 A 1 
HETATM 23 N NBB R4L . . . B 2 -42.901 0.957 -14.884 1 55.76 ? NBB R4L 1394 A 1 
HETATM 24 C CBF R4L . . . B 2 -42.555 0.089 -13.9 1 53.73 ? CBF R4L 1394 A 1 
HETATM 25 C CBH R4L . . . B 2 -42.735 -1.259 -14.186 1 47.89 ? CBH R4L 1394 A 1 
HETATM 26 C CAM R4L . . . B 2 -42.376 -2.251 -13.266 1 50.94 ? CAM R4L 1394 A 1 
HETATM 27 O OBC R4L . . . B 2 -43.301 -1.504 -15.403 1 43.55 ? OBC R4L 1394 A 1 
HETATM 28 C CAA R4L . . . B 2 -43.546 -2.879 -15.705 1 40.32 ? CAA R4L 1394 A 1 
HETATM 29 C CAI R4L . . . B 2 -41.976 0.444 -12.689 1 56.01 ? CAI R4L 1394 A 1 
HETATM 30 C CAH R4L . . . B 2 -41.618 -0.543 -11.777 1 59.8 ? CAH R4L 1394 A 1 
HETATM 31 C CBE R4L . . . B 2 -41.83 -1.892 -12.048 1 60.29 ? CBE R4L 1394 A 1 
HETATM 32 C CBD R4L . . . B 2 -41.407 -2.862 -11.126 1 74.12 ? CBD R4L 1394 A 1 
HETATM 33 O OAD R4L . . . B 2 -40.39 -3.504 -11.424 1 57.27 ? OAD R4L 1394 A 1 
HETATM 34 N NBQ R4L . . . B 2 -41.99 -3.01 -9.921 1 70.47 ? NBQ R4L 1394 A 1 
HETATM 35 C CAU R4L . . . B 2 -41.422 -4.013 -8.98 1 75.01 ? CAU R4L 1394 A 1 
HETATM 36 C CAS R4L . . . B 2 -42.448 -4.991 -8.547 1 86.76 ? CAS R4L 1394 A 1 
HETATM 37 C CAT R4L . . . B 2 -43.191 -2.267 -9.541 1 76.52 ? CAT R4L 1394 A 1 
HETATM 38 C CAR R4L . . . B 2 -44.214 -3.309 -9.145 1 94.41 ? CAR R4L 1394 A 1 
HETATM 39 C CBN R4L . . . B 2 -43.559 -4.102 -7.959 1 96.06 ? CBN R4L 1394 A 1 
HETATM 40 N NBR R4L . . . B 2 -44.464 -4.795 -7.015 1 112.16 ? NBR R4L 1394 A 1 
HETATM 41 C CAX R4L . . . B 2 -45.529 -3.928 -6.474 1 124.2 ? CAX R4L 1394 A 1 
HETATM 42 C CAV R4L . . . B 2 -46.931 -4.216 -7.056 1 140.17 ? CAV R4L 1394 A 1 
HETATM 43 N NBP R4L . . . B 2 -47.34 -5.64 -6.95 1 141.76 ? NBP R4L 1394 A 1 
HETATM 44 C CAB R4L . . . B 2 -48.28 -6.007 -8.03 1 126.78 ? CAB R4L 1394 A 1 
HETATM 45 C CAW R4L . . . B 2 -46.214 -6.567 -6.956 1 122.35 ? CAW R4L 1394 A 1 
HETATM 46 C CAY R4L . . . B 2 -45.128 -5.878 -7.785 1 122.07 ? CAY R4L 1394 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           234 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           46 
#