data_4BAS
#
_model_server_result.job_id            jUCS_QNSPw1HfIpxENCMgA 
_model_server_result.datetime_utc      '2024-10-10 04:25:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4bas 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1182}' 
#
_entry.id    4BAS 
#
_exptl.entry_id    4BAS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4BAS 
_cell.length_a            70.92 
_cell.length_b            70.92 
_cell.length_c            80.928 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4BAS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 106.38 61.418522 53.952 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 31 A THR 21 1_555 C MG MG . A MG 1183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc2 A OG1 THR 50 A THR 40 1_555 C MG MG . A MG 1183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc3 B O2B GNP . A GNP 1182 1_555 C MG MG . A MG 1183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? 
metalc ? metalc4 B O1G GNP . A GNP 1182 1_555 C MG MG . A MG 1183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc5 C MG MG . A MG 1183 1_555 F O HOH . A HOH 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc6 C MG MG . A MG 1183 1_555 F O HOH . A HOH 2013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     4BAS 
_atom_sites.fract_transf_matrix[1][1]    0.0141 
_atom_sites.fract_transf_matrix[1][2]    0.008141 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016282 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012357 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GNP A 1 1182 1182 GNP GNP . 
C 3 MG A 1 1183 1183 MG MG . 
D 4 SO4 A 1 1184 1184 SO4 SO4 . 
E 4 SO4 A 1 1185 1185 SO4 SO4 . 
F 5 HOH A 1 2001 2001 HOH HOH . 
F 5 HOH A 2 2002 2002 HOH HOH . 
F 5 HOH A 3 2003 2003 HOH HOH . 
F 5 HOH A 4 2004 2004 HOH HOH . 
F 5 HOH A 5 2005 2005 HOH HOH . 
F 5 HOH A 6 2006 2006 HOH HOH . 
F 5 HOH A 7 2007 2007 HOH HOH . 
F 5 HOH A 8 2008 2008 HOH HOH . 
F 5 HOH A 9 2009 2009 HOH HOH . 
F 5 HOH A 10 2010 2010 HOH HOH . 
F 5 HOH A 11 2011 2011 HOH HOH . 
F 5 HOH A 12 2012 2012 HOH HOH . 
F 5 HOH A 13 2013 2013 HOH HOH . 
F 5 HOH A 14 2014 2014 HOH HOH . 
F 5 HOH A 15 2015 2015 HOH HOH . 
F 5 HOH A 16 2016 2016 HOH HOH . 
F 5 HOH A 17 2017 2017 HOH HOH . 
F 5 HOH A 18 2018 2018 HOH HOH . 
F 5 HOH A 19 2019 2019 HOH HOH . 
F 5 HOH A 20 2020 2020 HOH HOH . 
F 5 HOH A 21 2021 2021 HOH HOH . 
F 5 HOH A 22 2022 2022 HOH HOH . 
F 5 HOH A 23 2023 2023 HOH HOH . 
F 5 HOH A 24 2024 2024 HOH HOH . 
F 5 HOH A 25 2025 2025 HOH HOH . 
F 5 HOH A 26 2026 2026 HOH HOH . 
F 5 HOH A 27 2027 2027 HOH HOH . 
F 5 HOH A 28 2028 2028 HOH HOH . 
F 5 HOH A 29 2029 2029 HOH HOH . 
F 5 HOH A 30 2030 2030 HOH HOH . 
F 5 HOH A 31 2031 2031 HOH HOH . 
F 5 HOH A 32 2032 2032 HOH HOH . 
F 5 HOH A 33 2033 2033 HOH HOH . 
F 5 HOH A 34 2034 2034 HOH HOH . 
F 5 HOH A 35 2035 2035 HOH HOH . 
F 5 HOH A 36 2036 2036 HOH HOH . 
F 5 HOH A 37 2037 2037 HOH HOH . 
F 5 HOH A 38 2038 2038 HOH HOH . 
F 5 HOH A 39 2039 2039 HOH HOH . 
F 5 HOH A 40 2040 2040 HOH HOH . 
F 5 HOH A 41 2041 2041 HOH HOH . 
F 5 HOH A 42 2042 2042 HOH HOH . 
F 5 HOH A 43 2043 2043 HOH HOH . 
F 5 HOH A 44 2044 2044 HOH HOH . 
F 5 HOH A 45 2045 2045 HOH HOH . 
F 5 HOH A 46 2046 2046 HOH HOH . 
F 5 HOH A 47 2047 2047 HOH HOH . 
F 5 HOH A 48 2048 2048 HOH HOH . 
F 5 HOH A 49 2049 2049 HOH HOH . 
F 5 HOH A 50 2050 2050 HOH HOH . 
F 5 HOH A 51 2051 2051 HOH HOH . 
F 5 HOH A 52 2052 2052 HOH HOH . 
F 5 HOH A 53 2053 2053 HOH HOH . 
F 5 HOH A 54 2054 2054 HOH HOH . 
F 5 HOH A 55 2055 2055 HOH HOH . 
F 5 HOH A 56 2056 2056 HOH HOH . 
F 5 HOH A 57 2057 2057 HOH HOH . 
F 5 HOH A 58 2058 2058 HOH HOH . 
F 5 HOH A 59 2059 2059 HOH HOH . 
F 5 HOH A 60 2060 2060 HOH HOH . 
F 5 HOH A 61 2061 2061 HOH HOH . 
F 5 HOH A 62 2062 2062 HOH HOH . 
F 5 HOH A 63 2063 2063 HOH HOH . 
F 5 HOH A 64 2064 2064 HOH HOH . 
F 5 HOH A 65 2065 2065 HOH HOH . 
F 5 HOH A 66 2066 2066 HOH HOH . 
F 5 HOH A 67 2067 2067 HOH HOH . 
F 5 HOH A 68 2068 2068 HOH HOH . 
F 5 HOH A 69 2069 2069 HOH HOH . 
F 5 HOH A 70 2070 2070 HOH HOH . 
F 5 HOH A 71 2071 2071 HOH HOH . 
F 5 HOH A 72 2072 2072 HOH HOH . 
F 5 HOH A 73 2073 2073 HOH HOH . 
F 5 HOH A 74 2074 2074 HOH HOH . 
F 5 HOH A 75 2075 2075 HOH HOH . 
F 5 HOH A 76 2076 2076 HOH HOH . 
F 5 HOH A 77 2077 2077 HOH HOH . 
F 5 HOH A 78 2078 2078 HOH HOH . 
F 5 HOH A 79 2079 2079 HOH HOH . 
F 5 HOH A 80 2080 2080 HOH HOH . 
F 5 HOH A 81 2081 2081 HOH HOH . 
F 5 HOH A 82 2082 2082 HOH HOH . 
F 5 HOH A 83 2083 2083 HOH HOH . 
F 5 HOH A 84 2084 2084 HOH HOH . 
F 5 HOH A 85 2085 2085 HOH HOH . 
F 5 HOH A 86 2086 2086 HOH HOH . 
F 5 HOH A 87 2087 2087 HOH HOH . 
F 5 HOH A 88 2088 2088 HOH HOH . 
F 5 HOH A 89 2089 2089 HOH HOH . 
F 5 HOH A 90 2090 2090 HOH HOH . 
F 5 HOH A 91 2091 2091 HOH HOH . 
F 5 HOH A 92 2092 2092 HOH HOH . 
F 5 HOH A 93 2093 2093 HOH HOH . 
F 5 HOH A 94 2094 2094 HOH HOH . 
F 5 HOH A 95 2095 2095 HOH HOH . 
F 5 HOH A 96 2096 2096 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . B 2 42.26 21.817 8.033 1 23.84 ? PG GNP 1182 A 1 
HETATM 2 O O1G GNP . . . B 2 40.838 21.592 8.449 1 20.05 ? O1G GNP 1182 A 1 
HETATM 3 O O2G GNP . . . B 2 42.561 21.154 6.61 1 25.03 ? O2G GNP 1182 A 1 
HETATM 4 O O3G GNP . . . B 2 42.506 23.379 8.052 1 21.44 ? O3G GNP 1182 A 1 
HETATM 5 N N3B GNP . . . B 2 43.335 20.957 9.068 1 24.04 ? N3B GNP 1182 A 1 
HETATM 6 P PB GNP . . . B 2 43.23 21.199 10.758 1 21.14 ? PB GNP 1182 A 1 
HETATM 7 O O1B GNP . . . B 2 43.868 22.487 11.151 1 20.3 ? O1B GNP 1182 A 1 
HETATM 8 O O2B GNP . . . B 2 41.685 21.184 11.078 1 16.03 ? O2B GNP 1182 A 1 
HETATM 9 O O3A GNP . . . B 2 44.021 19.927 11.319 1 15.13 ? O3A GNP 1182 A 1 
HETATM 10 P PA GNP . . . B 2 43.367 18.564 11.807 1 20.24 ? PA GNP 1182 A 1 
HETATM 11 O O1A GNP . . . B 2 42.786 18.713 13.175 1 20.39 ? O1A GNP 1182 A 1 
HETATM 12 O O2A GNP . . . B 2 42.537 17.931 10.731 1 18.98 ? O2A GNP 1182 A 1 
HETATM 13 O O5' GNP . . . B 2 44.72 17.757 12.041 1 19.43 ? O5' GNP 1182 A 1 
HETATM 14 C C5' GNP . . . B 2 45.684 17.569 11.021 1 21.41 ? C5' GNP 1182 A 1 
HETATM 15 C C4' GNP . . . B 2 46.539 16.358 11.379 1 18.81 ? C4' GNP 1182 A 1 
HETATM 16 O O4' GNP . . . B 2 47.46 16.68 12.444 1 22.59 ? O4' GNP 1182 A 1 
HETATM 17 C C3' GNP . . . B 2 45.754 15.154 11.884 1 24.84 ? C3' GNP 1182 A 1 
HETATM 18 O O3' GNP . . . B 2 46.43 13.952 11.519 1 26.76 ? O3' GNP 1182 A 1 
HETATM 19 C C2' GNP . . . B 2 45.828 15.226 13.385 1 28 ? C2' GNP 1182 A 1 
HETATM 20 O O2' GNP . . . B 2 45.714 13.961 14.045 1 23.74 ? O2' GNP 1182 A 1 
HETATM 21 C C1' GNP . . . B 2 47.226 15.772 13.556 1 18.75 ? C1' GNP 1182 A 1 
HETATM 22 N N9 GNP . . . B 2 47.399 16.523 14.807 1 27.42 ? N9 GNP 1182 A 1 
HETATM 23 C C8 GNP . . . B 2 46.623 17.504 15.276 1 21.52 ? C8 GNP 1182 A 1 
HETATM 24 N N7 GNP . . . B 2 47.155 17.996 16.411 1 20.93 ? N7 GNP 1182 A 1 
HETATM 25 C C5 GNP . . . B 2 48.279 17.322 16.66 1 25.14 ? C5 GNP 1182 A 1 
HETATM 26 C C6 GNP . . . B 2 49.328 17.322 17.693 1 18.25 ? C6 GNP 1182 A 1 
HETATM 27 O O6 GNP . . . B 2 49.249 18.129 18.618 1 19.14 ? O6 GNP 1182 A 1 
HETATM 28 N N1 GNP . . . B 2 50.36 16.47 17.57 1 25.38 ? N1 GNP 1182 A 1 
HETATM 29 C C2 GNP . . . B 2 50.441 15.601 16.546 1 33.08 ? C2 GNP 1182 A 1 
HETATM 30 N N2 GNP . . . B 2 51.476 14.744 16.453 1 28.49 ? N2 GNP 1182 A 1 
HETATM 31 N N3 GNP . . . B 2 49.513 15.541 15.574 1 20.08 ? N3 GNP 1182 A 1 
HETATM 32 C C4 GNP . . . B 2 48.449 16.371 15.583 1 20.8 ? C4 GNP 1182 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#