data_4BB6 # _model_server_result.job_id 4IoOJmgj1cBFggRMCI3ojA _model_server_result.datetime_utc '2024-11-05 14:45:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bb6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1284}' # _entry.id 4BB6 # _exptl.entry_id 4BB6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4BB6 _cell.length_a 108.651 _cell.length_b 108.651 _cell.length_c 135.771 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BB6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 308 n n PA O2A NAP sing 309 n n PA O5B NAP sing 310 n n PA O3 NAP sing 311 n n O2A HOA2 NAP sing 312 n n O5B C5B NAP sing 313 n n C5B C4B NAP sing 314 n n C5B H51A NAP sing 315 n n C5B H52A NAP sing 316 n n C4B O4B NAP sing 317 n n C4B C3B NAP sing 318 n n C4B H4B NAP sing 319 n n O4B C1B NAP sing 320 n n C3B O3B NAP sing 321 n n C3B C2B NAP sing 322 n n C3B H3B NAP sing 323 n n O3B HO3A NAP sing 324 n n C2B O2B NAP sing 325 n n C2B C1B NAP sing 326 n n C2B H2B NAP sing 327 n n O2B P2B NAP sing 328 n n C1B N9A NAP sing 329 n n C1B H1B NAP sing 330 n n N9A C8A NAP sing 331 n y N9A C4A NAP sing 332 n y C8A N7A NAP doub 333 n y C8A H8A NAP sing 334 n n N7A C5A NAP sing 335 n y C5A C6A NAP sing 336 n y C5A C4A NAP doub 337 n y C6A N6A NAP sing 338 n n C6A N1A NAP doub 339 n y N6A H61A NAP sing 340 n n N6A H62A NAP sing 341 n n N1A C2A NAP sing 342 n y C2A N3A NAP doub 343 n y C2A H2A NAP sing 344 n n N3A C4A NAP sing 345 n y O3 PN NAP sing 346 n n PN O1N NAP doub 347 n n PN O2N NAP sing 348 n n PN O5D NAP sing 349 n n O5D C5D NAP sing 350 n n C5D C4D NAP sing 351 n n C5D H51N NAP sing 352 n n C5D H52N NAP sing 353 n n C4D O4D NAP sing 354 n n C4D C3D NAP sing 355 n n C4D H4D NAP sing 356 n n O4D C1D NAP sing 357 n n C3D O3D NAP sing 358 n n C3D C2D NAP sing 359 n n C3D H3D NAP sing 360 n n O3D HO3N NAP sing 361 n n C2D O2D NAP sing 362 n n C2D C1D NAP sing 363 n n C2D H2D NAP sing 364 n n O2D HO2N NAP sing 365 n n C1D N1N NAP sing 366 n n C1D H1D NAP sing 367 n n N1N C2N NAP sing 368 n y N1N C6N NAP doub 369 n y C2N C3N NAP doub 370 n y C2N H2N NAP sing 371 n n C3N C7N NAP sing 372 n n C3N C4N NAP sing 373 n y C7N O7N NAP doub 374 n n C7N N7N NAP sing 375 n n N7N H71N NAP sing 376 n n N7N H72N NAP sing 377 n n C4N C5N NAP doub 378 n y C4N H4N NAP sing 379 n n C5N C6N NAP sing 380 n y C5N H5N NAP sing 381 n n C6N H6N NAP sing 382 n n P2B O1X NAP doub 383 n n P2B O2X NAP sing 384 n n P2B O3X NAP sing 385 n n O2X HOP2 NAP sing 386 n n O3X HOP3 NAP sing 387 n n # _atom_sites.entry_id 4BB6 _atom_sites.fract_transf_matrix[1][1] 0.009204 _atom_sites.fract_transf_matrix[1][2] 0.005314 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007365 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 1292 1292 NAP NAP . D 3 HD1 A 1 1293 1293 HD1 HD1 . E 4 CL A 1 1294 1294 CL CL . F 2 NAP B 1 1284 1284 NAP NAP . G 3 HD1 B 1 1285 1285 HD1 HD1 . H 5 HOH A 1 2001 2001 HOH HOH . H 5 HOH A 2 2002 2002 HOH HOH . H 5 HOH A 3 2003 2003 HOH HOH . H 5 HOH A 4 2004 2004 HOH HOH . H 5 HOH A 5 2005 2005 HOH HOH . H 5 HOH A 6 2006 2006 HOH HOH . H 5 HOH A 7 2007 2007 HOH HOH . H 5 HOH A 8 2008 2008 HOH HOH . H 5 HOH A 9 2009 2009 HOH HOH . I 5 HOH B 1 2001 2001 HOH HOH . I 5 HOH B 2 2002 2002 HOH HOH . I 5 HOH B 3 2003 2003 HOH HOH . I 5 HOH B 4 2004 2004 HOH HOH . I 5 HOH B 5 2005 2005 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . F 2 -3.612 41.591 46.601 1 54.72 ? PA NAP 1284 B 1 HETATM 2 O O1A NAP . . . F 2 -3.709 42.851 47.384 1 52.99 ? O1A NAP 1284 B 1 HETATM 3 O O2A NAP . . . F 2 -4 40.373 47.346 1 56.79 ? O2A NAP 1284 B 1 HETATM 4 O O5B NAP . . . F 2 -2.122 41.442 46.07 1 55.71 ? O5B NAP 1284 B 1 HETATM 5 C C5B NAP . . . F 2 -1.567 42.554 45.413 1 55.82 ? C5B NAP 1284 B 1 HETATM 6 C C4B NAP . . . F 2 -0.131 42.193 45.173 1 56.19 ? C4B NAP 1284 B 1 HETATM 7 O O4B NAP . . . F 2 0.462 43.324 44.6 1 57.59 ? O4B NAP 1284 B 1 HETATM 8 C C3B NAP . . . F 2 0.61 41.899 46.486 1 57.52 ? C3B NAP 1284 B 1 HETATM 9 O O3B NAP . . . F 2 1.541 40.852 46.309 1 56.25 ? O3B NAP 1284 B 1 HETATM 10 C C2B NAP . . . F 2 1.374 43.184 46.78 1 56.82 ? C2B NAP 1284 B 1 HETATM 11 O O2B NAP . . . F 2 2.537 42.859 47.481 1 53.84 ? O2B NAP 1284 B 1 HETATM 12 C C1B NAP . . . F 2 1.619 43.701 45.359 1 56.85 ? C1B NAP 1284 B 1 HETATM 13 N N9A NAP . . . F 2 1.944 45.139 45.457 1 56.59 ? N9A NAP 1284 B 1 HETATM 14 C C8A NAP . . . F 2 1.26 46.141 46.095 1 55.85 ? C8A NAP 1284 B 1 HETATM 15 N N7A NAP . . . F 2 1.961 47.294 45.968 1 54.42 ? N7A NAP 1284 B 1 HETATM 16 C C5A NAP . . . F 2 3.096 47.05 45.263 1 54.37 ? C5A NAP 1284 B 1 HETATM 17 C C6A NAP . . . F 2 4.187 47.824 44.847 1 53.64 ? C6A NAP 1284 B 1 HETATM 18 N N6A NAP . . . F 2 4.32 49.12 45.089 1 52.03 ? N6A NAP 1284 B 1 HETATM 19 N N1A NAP . . . F 2 5.197 47.226 44.139 1 54.81 ? N1A NAP 1284 B 1 HETATM 20 C C2A NAP . . . F 2 5.169 45.892 43.834 1 55.94 ? C2A NAP 1284 B 1 HETATM 21 N N3A NAP . . . F 2 4.095 45.123 44.233 1 57.18 ? N3A NAP 1284 B 1 HETATM 22 C C4A NAP . . . F 2 3.084 45.692 44.941 1 56.46 ? C4A NAP 1284 B 1 HETATM 23 O O3 NAP . . . F 2 -4.457 41.692 45.242 1 55 ? O3 NAP 1284 B 1 HETATM 24 P PN NAP . . . F 2 -5.441 40.622 44.554 1 54.81 ? PN NAP 1284 B 1 HETATM 25 O O1N NAP . . . F 2 -6.768 40.69 45.149 1 55.3 ? O1N NAP 1284 B 1 HETATM 26 O O2N NAP . . . F 2 -4.836 39.294 44.571 1 57.65 ? O2N NAP 1284 B 1 HETATM 27 O O5D NAP . . . F 2 -5.413 41.186 43.065 1 53.57 ? O5D NAP 1284 B 1 HETATM 28 C C5D NAP . . . F 2 -4.286 41.024 42.241 1 55.47 ? C5D NAP 1284 B 1 HETATM 29 C C4D NAP . . . F 2 -4.735 41.326 40.817 1 56.72 ? C4D NAP 1284 B 1 HETATM 30 O O4D NAP . . . F 2 -6.06 40.839 40.646 1 56.96 ? O4D NAP 1284 B 1 HETATM 31 C C3D NAP . . . F 2 -4.75 42.825 40.554 1 57.22 ? C3D NAP 1284 B 1 HETATM 32 O O3D NAP . . . F 2 -4.247 43.132 39.285 1 57.62 ? O3D NAP 1284 B 1 HETATM 33 C C2D NAP . . . F 2 -6.208 43.167 40.604 1 57.49 ? C2D NAP 1284 B 1 HETATM 34 O O2D NAP . . . F 2 -6.542 44.311 39.84 1 56.98 ? O2D NAP 1284 B 1 HETATM 35 C C1D NAP . . . F 2 -6.834 41.875 40.097 1 57.81 ? C1D NAP 1284 B 1 HETATM 36 N N1N NAP . . . F 2 -8.248 41.843 40.482 1 58.62 ? N1N NAP 1284 B 1 HETATM 37 C C2N NAP . . . F 2 -8.637 41.446 41.724 1 59.68 ? C2N NAP 1284 B 1 HETATM 38 C C3N NAP . . . F 2 -9.992 41.446 42.058 1 61.59 ? C3N NAP 1284 B 1 HETATM 39 C C7N NAP . . . F 2 -10.447 40.981 43.405 1 61.09 ? C7N NAP 1284 B 1 HETATM 40 O O7N NAP . . . F 2 -11.811 41.052 43.76 1 62.54 ? O7N NAP 1284 B 1 HETATM 41 N N7N NAP . . . F 2 -9.544 40.499 44.248 1 62.21 ? N7N NAP 1284 B 1 HETATM 42 C C4N NAP . . . F 2 -10.939 41.87 41.119 1 62.07 ? C4N NAP 1284 B 1 HETATM 43 C C5N NAP . . . F 2 -10.501 42.284 39.864 1 61.2 ? C5N NAP 1284 B 1 HETATM 44 C C6N NAP . . . F 2 -9.148 42.272 39.559 1 59.46 ? C6N NAP 1284 B 1 HETATM 45 P P2B NAP . . . F 2 3.309 43.775 48.566 1 56 ? P2B NAP 1284 B 1 HETATM 46 O O1X NAP . . . F 2 2.398 44.545 49.515 1 49.49 ? O1X NAP 1284 B 1 HETATM 47 O O2X NAP . . . F 2 4.234 42.848 49.337 1 48.86 ? O2X NAP 1284 B 1 HETATM 48 O O3X NAP . . . F 2 4.182 44.729 47.794 1 51.97 ? O3X NAP 1284 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #