data_4BB6
#
_model_server_result.job_id            YOti9hM3I_hocAssYcxVWA 
_model_server_result.datetime_utc      '2024-11-05 14:49:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4bb6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1285}' 
#
_entry.id    4BB6 
#
_exptl.entry_id    4BB6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              444.633 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-(4-methylpiperazin-1-yl)-N-[(1R,3S)-5-oxidanyl-2-adamantyl]-2-propylsulfanyl-pyridine-3-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4BB6 
_cell.length_a            108.651 
_cell.length_b            108.651 
_cell.length_c            135.771 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4BB6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
_chem_comp.formula           'C24 H36 N4 O2 S' 
_chem_comp.formula_weight    444.633 
_chem_comp.id                HD1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-(4-methylpiperazin-1-yl)-N-[(1R,3S)-5-oxidanyl-2-adamantyl]-2-propylsulfanyl-pyridine-3-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C14 HD1 doub 129 n n 
C14 N4 HD1 sing 130 n n 
C14 C5 HD1 sing 131 n n 
N4 C15 HD1 sing 132 n n 
C15 C20 HD1 sing 133 n n 
C15 C16 HD1 sing 134 n n 
C20 C19 HD1 sing 135 n n 
C20 C21 HD1 sing 136 n n 
C19 C18 HD1 sing 137 n n 
C21 C22 HD1 sing 138 n n 
C22 C23 HD1 sing 139 n n 
C22 O2 HD1 sing 140 n n 
C22 C24 HD1 sing 141 n n 
C23 C18 HD1 sing 142 n n 
C18 C17 HD1 sing 143 n n 
C17 C16 HD1 sing 144 n n 
C24 C16 HD1 sing 145 n n 
C5 C6 HD1 sing 146 n y 
C5 C4 HD1 doub 147 n y 
C6 C7 HD1 doub 148 n y 
C7 C8 HD1 sing 149 n y 
C8 N2 HD1 sing 150 n n 
C8 N1 HD1 doub 151 n y 
N2 C12 HD1 sing 152 n n 
N2 C9 HD1 sing 153 n n 
C12 C11 HD1 sing 154 n n 
C11 N3 HD1 sing 155 n n 
N3 C13 HD1 sing 156 n n 
N3 C10 HD1 sing 157 n n 
C10 C9 HD1 sing 158 n n 
N1 C4 HD1 sing 159 n y 
C4 S1 HD1 sing 160 n n 
S1 C3 HD1 sing 161 n n 
C3 C2 HD1 sing 162 n n 
C2 C1 HD1 sing 163 n n 
N4 H4 HD1 sing 164 n n 
C15 H15 HD1 sing 165 n n 
C20 H20 HD1 sing 166 n n 
C16 H16 HD1 sing 167 n n 
C19 H191 HD1 sing 168 n n 
C19 H192 HD1 sing 169 n n 
C21 H211 HD1 sing 170 n n 
C21 H212 HD1 sing 171 n n 
C18 H18 HD1 sing 172 n n 
C23 H231 HD1 sing 173 n n 
C23 H232 HD1 sing 174 n n 
O2 H2 HD1 sing 175 n n 
C24 H241 HD1 sing 176 n n 
C24 H242 HD1 sing 177 n n 
C17 H171 HD1 sing 178 n n 
C17 H172 HD1 sing 179 n n 
C6 H6 HD1 sing 180 n n 
C7 H7 HD1 sing 181 n n 
C12 H121 HD1 sing 182 n n 
C12 H122 HD1 sing 183 n n 
C9 H91C HD1 sing 184 n n 
C9 H92C HD1 sing 185 n n 
C11 H111 HD1 sing 186 n n 
C11 H112 HD1 sing 187 n n 
C13 H131 HD1 sing 188 n n 
C13 H132 HD1 sing 189 n n 
C13 H133 HD1 sing 190 n n 
C10 H101 HD1 sing 191 n n 
C10 H102 HD1 sing 192 n n 
C3 H31C HD1 sing 193 n n 
C3 H32C HD1 sing 194 n n 
C2 H21C HD1 sing 195 n n 
C2 H22C HD1 sing 196 n n 
C1 H11C HD1 sing 197 n n 
C1 H12C HD1 sing 198 n n 
C1 H13C HD1 sing 199 n n 
#
_atom_sites.entry_id                     4BB6 
_atom_sites.fract_transf_matrix[1][1]    0.009204 
_atom_sites.fract_transf_matrix[1][2]    0.005314 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010628 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007365 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAP A 1 1292 1292 NAP NAP . 
D 3 HD1 A 1 1293 1293 HD1 HD1 . 
E 4 CL A 1 1294 1294 CL CL . 
F 2 NAP B 1 1284 1284 NAP NAP . 
G 3 HD1 B 1 1285 1285 HD1 HD1 . 
H 5 HOH A 1 2001 2001 HOH HOH . 
H 5 HOH A 2 2002 2002 HOH HOH . 
H 5 HOH A 3 2003 2003 HOH HOH . 
H 5 HOH A 4 2004 2004 HOH HOH . 
H 5 HOH A 5 2005 2005 HOH HOH . 
H 5 HOH A 6 2006 2006 HOH HOH . 
H 5 HOH A 7 2007 2007 HOH HOH . 
H 5 HOH A 8 2008 2008 HOH HOH . 
H 5 HOH A 9 2009 2009 HOH HOH . 
I 5 HOH B 1 2001 2001 HOH HOH . 
I 5 HOH B 2 2002 2002 HOH HOH . 
I 5 HOH B 3 2003 2003 HOH HOH . 
I 5 HOH B 4 2004 2004 HOH HOH . 
I 5 HOH B 5 2005 2005 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 HD1 . . . G 3 -11.871 45.31 40.488 1 70.21 ? O1 HD1 1285 B 1 
HETATM 2 C C14 HD1 . . . G 3 -12.742 45.223 41.352 1 76.75 ? C14 HD1 1285 B 1 
HETATM 3 N N4 HD1 . . . G 3 -12.456 45.262 42.677 1 77.05 ? N4 HD1 1285 B 1 
HETATM 4 C C15 HD1 . . . G 3 -11.099 45.41 43.202 1 78.47 ? C15 HD1 1285 B 1 
HETATM 5 C C20 HD1 . . . G 3 -10.767 46.865 43.489 1 79.45 ? C20 HD1 1285 B 1 
HETATM 6 C C19 HD1 . . . G 3 -11.689 47.421 44.577 1 79.51 ? C19 HD1 1285 B 1 
HETATM 7 C C21 HD1 . . . G 3 -9.314 46.946 43.973 1 79.19 ? C21 HD1 1285 B 1 
HETATM 8 C C22 HD1 . . . G 3 -9.157 46.124 45.254 1 79.72 ? C22 HD1 1285 B 1 
HETATM 9 C C23 HD1 . . . G 3 -10.084 46.68 46.332 1 80.09 ? C23 HD1 1285 B 1 
HETATM 10 C C18 HD1 . . . G 3 -11.542 46.604 45.869 1 80.14 ? C18 HD1 1285 B 1 
HETATM 11 C C17 HD1 . . . G 3 -11.886 45.145 45.577 1 78.97 ? C17 HD1 1285 B 1 
HETATM 12 O O2 HD1 . . . G 3 -7.811 46.19 45.708 1 79.95 ? O2 HD1 1285 B 1 
HETATM 13 C C24 HD1 . . . G 3 -9.523 44.669 44.978 1 80.6 ? C24 HD1 1285 B 1 
HETATM 14 C C16 HD1 . . . G 3 -10.962 44.592 44.489 1 78.99 ? C16 HD1 1285 B 1 
HETATM 15 C C5 HD1 . . . G 3 -14.212 45.053 40.947 1 78.15 ? C5 HD1 1285 B 1 
HETATM 16 C C6 HD1 . . . G 3 -14.64 43.826 40.478 1 78.14 ? C6 HD1 1285 B 1 
HETATM 17 C C7 HD1 . . . G 3 -15.992 43.629 40.196 1 81.08 ? C7 HD1 1285 B 1 
HETATM 18 C C8 HD1 . . . G 3 -16.917 44.664 40.412 1 82.21 ? C8 HD1 1285 B 1 
HETATM 19 N N2 HD1 . . . G 3 -18.284 44.466 40.145 1 84.66 ? N2 HD1 1285 B 1 
HETATM 20 C C12 HD1 . . . G 3 -19.052 44.599 41.41 1 87.2 ? C12 HD1 1285 B 1 
HETATM 21 C C11 HD1 . . . G 3 -20.547 44.333 41.153 1 88.66 ? C11 HD1 1285 B 1 
HETATM 22 N N3 HD1 . . . G 3 -20.745 42.955 40.625 1 89.68 ? N3 HD1 1285 B 1 
HETATM 23 C C13 HD1 . . . G 3 -22.193 42.728 40.358 1 88.16 ? C13 HD1 1285 B 1 
HETATM 24 C C10 HD1 . . . G 3 -19.984 42.782 39.369 1 88.35 ? C10 HD1 1285 B 1 
HETATM 25 C C9 HD1 . . . G 3 -18.496 43.113 39.601 1 86.53 ? C9 HD1 1285 B 1 
HETATM 26 N N1 HD1 . . . G 3 -16.49 45.851 40.912 1 80.36 ? N1 HD1 1285 B 1 
HETATM 27 C C4 HD1 . . . G 3 -15.186 46.066 41.181 1 79.78 ? C4 HD1 1285 B 1 
HETATM 28 S S1 HD1 . . . G 3 -14.691 47.634 41.821 1 81.37 ? S1 HD1 1285 B 1 
HETATM 29 C C3 HD1 . . . G 3 -15.936 47.934 43.055 1 81.47 ? C3 HD1 1285 B 1 
HETATM 30 C C2 HD1 . . . G 3 -17.175 48.604 42.467 1 78.76 ? C2 HD1 1285 B 1 
HETATM 31 C C1 HD1 . . . G 3 -18.056 49.151 43.565 1 77.02 ? C1 HD1 1285 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           399 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           31 
#