data_4BB6 # _model_server_result.job_id ssSh8d_VbuykrN52RNAZJQ _model_server_result.datetime_utc '2024-11-23 01:47:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bb6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1292}' # _entry.id 4BB6 # _exptl.entry_id 4BB6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4BB6 _cell.length_a 108.651 _cell.length_b 108.651 _cell.length_c 135.771 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BB6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 308 n n PA O2A NAP sing 309 n n PA O5B NAP sing 310 n n PA O3 NAP sing 311 n n O2A HOA2 NAP sing 312 n n O5B C5B NAP sing 313 n n C5B C4B NAP sing 314 n n C5B H51A NAP sing 315 n n C5B H52A NAP sing 316 n n C4B O4B NAP sing 317 n n C4B C3B NAP sing 318 n n C4B H4B NAP sing 319 n n O4B C1B NAP sing 320 n n C3B O3B NAP sing 321 n n C3B C2B NAP sing 322 n n C3B H3B NAP sing 323 n n O3B HO3A NAP sing 324 n n C2B O2B NAP sing 325 n n C2B C1B NAP sing 326 n n C2B H2B NAP sing 327 n n O2B P2B NAP sing 328 n n C1B N9A NAP sing 329 n n C1B H1B NAP sing 330 n n N9A C8A NAP sing 331 n y N9A C4A NAP sing 332 n y C8A N7A NAP doub 333 n y C8A H8A NAP sing 334 n n N7A C5A NAP sing 335 n y C5A C6A NAP sing 336 n y C5A C4A NAP doub 337 n y C6A N6A NAP sing 338 n n C6A N1A NAP doub 339 n y N6A H61A NAP sing 340 n n N6A H62A NAP sing 341 n n N1A C2A NAP sing 342 n y C2A N3A NAP doub 343 n y C2A H2A NAP sing 344 n n N3A C4A NAP sing 345 n y O3 PN NAP sing 346 n n PN O1N NAP doub 347 n n PN O2N NAP sing 348 n n PN O5D NAP sing 349 n n O5D C5D NAP sing 350 n n C5D C4D NAP sing 351 n n C5D H51N NAP sing 352 n n C5D H52N NAP sing 353 n n C4D O4D NAP sing 354 n n C4D C3D NAP sing 355 n n C4D H4D NAP sing 356 n n O4D C1D NAP sing 357 n n C3D O3D NAP sing 358 n n C3D C2D NAP sing 359 n n C3D H3D NAP sing 360 n n O3D HO3N NAP sing 361 n n C2D O2D NAP sing 362 n n C2D C1D NAP sing 363 n n C2D H2D NAP sing 364 n n O2D HO2N NAP sing 365 n n C1D N1N NAP sing 366 n n C1D H1D NAP sing 367 n n N1N C2N NAP sing 368 n y N1N C6N NAP doub 369 n y C2N C3N NAP doub 370 n y C2N H2N NAP sing 371 n n C3N C7N NAP sing 372 n n C3N C4N NAP sing 373 n y C7N O7N NAP doub 374 n n C7N N7N NAP sing 375 n n N7N H71N NAP sing 376 n n N7N H72N NAP sing 377 n n C4N C5N NAP doub 378 n y C4N H4N NAP sing 379 n n C5N C6N NAP sing 380 n y C5N H5N NAP sing 381 n n C6N H6N NAP sing 382 n n P2B O1X NAP doub 383 n n P2B O2X NAP sing 384 n n P2B O3X NAP sing 385 n n O2X HOP2 NAP sing 386 n n O3X HOP3 NAP sing 387 n n # _atom_sites.entry_id 4BB6 _atom_sites.fract_transf_matrix[1][1] 0.009204 _atom_sites.fract_transf_matrix[1][2] 0.005314 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007365 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 1292 1292 NAP NAP . D 3 HD1 A 1 1293 1293 HD1 HD1 . E 4 CL A 1 1294 1294 CL CL . F 2 NAP B 1 1284 1284 NAP NAP . G 3 HD1 B 1 1285 1285 HD1 HD1 . H 5 HOH A 1 2001 2001 HOH HOH . H 5 HOH A 2 2002 2002 HOH HOH . H 5 HOH A 3 2003 2003 HOH HOH . H 5 HOH A 4 2004 2004 HOH HOH . H 5 HOH A 5 2005 2005 HOH HOH . H 5 HOH A 6 2006 2006 HOH HOH . H 5 HOH A 7 2007 2007 HOH HOH . H 5 HOH A 8 2008 2008 HOH HOH . H 5 HOH A 9 2009 2009 HOH HOH . I 5 HOH B 1 2001 2001 HOH HOH . I 5 HOH B 2 2002 2002 HOH HOH . I 5 HOH B 3 2003 2003 HOH HOH . I 5 HOH B 4 2004 2004 HOH HOH . I 5 HOH B 5 2005 2005 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 2 -4.521 69.383 16.438 1 57.27 ? PA NAP 1292 A 1 HETATM 2 O O1A NAP . . . C 2 -3.185 68.794 16.13 1 55.18 ? O1A NAP 1292 A 1 HETATM 3 O O2A NAP . . . C 2 -5.139 70.062 15.283 1 55.38 ? O2A NAP 1292 A 1 HETATM 4 O O5B NAP . . . C 2 -4.505 70.314 17.765 1 56.74 ? O5B NAP 1292 A 1 HETATM 5 C C5B NAP . . . C 2 -3.778 69.994 18.93 1 56.5 ? C5B NAP 1292 A 1 HETATM 6 C C4B NAP . . . C 2 -3.996 71.188 19.835 1 58.33 ? C4B NAP 1292 A 1 HETATM 7 O O4B NAP . . . C 2 -3.508 71.008 21.156 1 59 ? O4B NAP 1292 A 1 HETATM 8 C C3B NAP . . . C 2 -3.265 72.393 19.274 1 58.97 ? C3B NAP 1292 A 1 HETATM 9 O O3B NAP . . . C 2 -4.008 73.551 19.59 1 58.52 ? O3B NAP 1292 A 1 HETATM 10 C C2B NAP . . . C 2 -1.949 72.429 20.012 1 58.33 ? C2B NAP 1292 A 1 HETATM 11 O O2B NAP . . . C 2 -1.439 73.747 19.994 1 56.6 ? O2B NAP 1292 A 1 HETATM 12 C C1B NAP . . . C 2 -2.425 71.91 21.372 1 58.2 ? C1B NAP 1292 A 1 HETATM 13 N N9A NAP . . . C 2 -1.305 71.325 22.115 1 57.39 ? N9A NAP 1292 A 1 HETATM 14 C C8A NAP . . . C 2 -0.317 70.496 21.666 1 57.58 ? C8A NAP 1292 A 1 HETATM 15 N N7A NAP . . . C 2 0.521 70.218 22.7 1 57.02 ? N7A NAP 1292 A 1 HETATM 16 C C5A NAP . . . C 2 0.084 70.882 23.791 1 57.22 ? C5A NAP 1292 A 1 HETATM 17 C C6A NAP . . . C 2 0.557 70.991 25.081 1 56.91 ? C6A NAP 1292 A 1 HETATM 18 N N6A NAP . . . C 2 1.653 70.354 25.447 1 58.27 ? N6A NAP 1292 A 1 HETATM 19 N N1A NAP . . . C 2 -0.114 71.769 25.992 1 57.44 ? N1A NAP 1292 A 1 HETATM 20 C C2A NAP . . . C 2 -1.252 72.453 25.635 1 58.56 ? C2A NAP 1292 A 1 HETATM 21 N N3A NAP . . . C 2 -1.724 72.33 24.341 1 57.66 ? N3A NAP 1292 A 1 HETATM 22 C C4A NAP . . . C 2 -1.064 71.575 23.438 1 57.25 ? C4A NAP 1292 A 1 HETATM 23 O O3 NAP . . . C 2 -5.508 68.255 16.977 1 56.05 ? O3 NAP 1292 A 1 HETATM 24 P PN NAP . . . C 2 -6.917 67.865 16.4 1 56.39 ? PN NAP 1292 A 1 HETATM 25 O O1N NAP . . . C 2 -6.693 67.124 15.156 1 59.21 ? O1N NAP 1292 A 1 HETATM 26 O O2N NAP . . . C 2 -7.802 69.049 16.382 1 60.98 ? O2N NAP 1292 A 1 HETATM 27 O O5D NAP . . . C 2 -7.408 66.923 17.598 1 59.77 ? O5D NAP 1292 A 1 HETATM 28 C C5D NAP . . . C 2 -8.026 67.474 18.74 1 59.14 ? C5D NAP 1292 A 1 HETATM 29 C C4D NAP . . . C 2 -8.63 66.368 19.587 1 59.83 ? C4D NAP 1292 A 1 HETATM 30 O O4D NAP . . . C 2 -9.475 65.516 18.82 1 58.91 ? O4D NAP 1292 A 1 HETATM 31 C C3D NAP . . . C 2 -7.575 65.491 20.252 1 59.03 ? C3D NAP 1292 A 1 HETATM 32 O O3D NAP . . . C 2 -7.941 65.278 21.607 1 58.66 ? O3D NAP 1292 A 1 HETATM 33 C C2D NAP . . . C 2 -7.624 64.197 19.481 1 57.77 ? C2D NAP 1292 A 1 HETATM 34 O O2D NAP . . . C 2 -7.233 63.078 20.251 1 55.71 ? O2D NAP 1292 A 1 HETATM 35 C C1D NAP . . . C 2 -9.078 64.168 19.049 1 57.87 ? C1D NAP 1292 A 1 HETATM 36 N N1N NAP . . . C 2 -9.215 63.325 17.853 1 56.22 ? N1N NAP 1292 A 1 HETATM 37 C C2N NAP . . . C 2 -8.788 63.776 16.661 1 55.29 ? C2N NAP 1292 A 1 HETATM 38 C C3N NAP . . . C 2 -8.91 62.946 15.56 1 55.73 ? C3N NAP 1292 A 1 HETATM 39 C C7N NAP . . . C 2 -8.501 63.417 14.216 1 52.75 ? C7N NAP 1292 A 1 HETATM 40 O O7N NAP . . . C 2 -8.668 62.521 13.178 1 54.42 ? O7N NAP 1292 A 1 HETATM 41 N N7N NAP . . . C 2 -7.989 64.637 14.037 1 53.57 ? N7N NAP 1292 A 1 HETATM 42 C C4N NAP . . . C 2 -9.454 61.669 15.681 1 56.76 ? C4N NAP 1292 A 1 HETATM 43 C C5N NAP . . . C 2 -9.876 61.233 16.907 1 55.25 ? C5N NAP 1292 A 1 HETATM 44 C C6N NAP . . . C 2 -9.738 62.081 17.992 1 56.28 ? C6N NAP 1292 A 1 HETATM 45 P P2B NAP . . . C 2 0.074 74.124 20.381 1 59.53 ? P2B NAP 1292 A 1 HETATM 46 O O1X NAP . . . C 2 0.309 73.939 21.858 1 62.65 ? O1X NAP 1292 A 1 HETATM 47 O O2X NAP . . . C 2 1.124 73.242 19.78 1 60.97 ? O2X NAP 1292 A 1 HETATM 48 O O3X NAP . . . C 2 0.313 75.586 20.007 1 62.66 ? O3X NAP 1292 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #