data_4BBJ # _model_server_result.job_id nNlYsvp6eprFWd5yvd_G-Q _model_server_result.datetime_utc '2024-11-17 15:47:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bbj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":800}' # _entry.id 4BBJ # _exptl.entry_id 4BBJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.01 _cell.angle_gamma 90 _cell.entry_id 4BBJ _cell.length_a 242.01 _cell.length_b 71.37 _cell.length_c 72.43 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BBJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 425 A VAL 425 1_555 A N BFD 426 A BFD 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C BFD 426 A BFD 426 1_555 A N LYS 427 A LYS 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OD2 BFD 426 A BFD 426 1_555 B MG MG . A MG 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc2 A O THR 428 A THR 428 1_555 B MG MG . A MG 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc3 A OD1 ASP 624 A ASP 624 1_555 B MG MG . A MG 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc4 B MG MG . A MG 750 1_555 F O HOH . A HOH 2016 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc5 B MG MG . A MG 750 1_555 F O HOH . A HOH 2030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 349 n n PA O2A NAD sing 350 n n PA O5B NAD sing 351 n n PA O3 NAD sing 352 n n O2A HOA2 NAD sing 353 n n O5B C5B NAD sing 354 n n C5B C4B NAD sing 355 n n C5B H51A NAD sing 356 n n C5B H52A NAD sing 357 n n C4B O4B NAD sing 358 n n C4B C3B NAD sing 359 n n C4B H4B NAD sing 360 n n O4B C1B NAD sing 361 n n C3B O3B NAD sing 362 n n C3B C2B NAD sing 363 n n C3B H3B NAD sing 364 n n O3B HO3A NAD sing 365 n n C2B O2B NAD sing 366 n n C2B C1B NAD sing 367 n n C2B H2B NAD sing 368 n n O2B HO2A NAD sing 369 n n C1B N9A NAD sing 370 n n C1B H1B NAD sing 371 n n N9A C8A NAD sing 372 n y N9A C4A NAD sing 373 n y C8A N7A NAD doub 374 n y C8A H8A NAD sing 375 n n N7A C5A NAD sing 376 n y C5A C6A NAD sing 377 n y C5A C4A NAD doub 378 n y C6A N6A NAD sing 379 n n C6A N1A NAD doub 380 n y N6A H61A NAD sing 381 n n N6A H62A NAD sing 382 n n N1A C2A NAD sing 383 n y C2A N3A NAD doub 384 n y C2A H2A NAD sing 385 n n N3A C4A NAD sing 386 n y O3 PN NAD sing 387 n n PN O1N NAD doub 388 n n PN O2N NAD sing 389 n n PN O5D NAD sing 390 n n O5D C5D NAD sing 391 n n C5D C4D NAD sing 392 n n C5D H51N NAD sing 393 n n C5D H52N NAD sing 394 n n C4D O4D NAD sing 395 n n C4D C3D NAD sing 396 n n C4D H4D NAD sing 397 n n O4D C1D NAD sing 398 n n C3D O3D NAD sing 399 n n C3D C2D NAD sing 400 n n C3D H3D NAD sing 401 n n O3D HO3N NAD sing 402 n n C2D O2D NAD sing 403 n n C2D C1D NAD sing 404 n n C2D H2D NAD sing 405 n n O2D HO2N NAD sing 406 n n C1D N1N NAD sing 407 n n C1D H1D NAD sing 408 n n N1N C2N NAD sing 409 n y N1N C6N NAD doub 410 n y C2N C3N NAD doub 411 n y C2N H2N NAD sing 412 n n C3N C7N NAD sing 413 n n C3N C4N NAD sing 414 n y C7N O7N NAD doub 415 n n C7N N7N NAD sing 416 n n N7N H71N NAD sing 417 n n N7N H72N NAD sing 418 n n C4N C5N NAD doub 419 n y C4N H4N NAD sing 420 n n C5N C6N NAD sing 421 n y C5N H5N NAD sing 422 n n C6N H6N NAD sing 423 n n # _atom_sites.entry_id 4BBJ _atom_sites.fract_transf_matrix[1][1] 0.004132 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000729 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01402 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 750 750 MG MG . C 3 NAD A 1 800 800 NAD NAD . D 4 CE1 A 1 900 900 CE1 CE1 . E 5 PC A 1 950 950 PC PC . F 6 HOH A 1 2001 2001 HOH HOH . F 6 HOH A 2 2002 2002 HOH HOH . F 6 HOH A 3 2003 2003 HOH HOH . F 6 HOH A 4 2004 2004 HOH HOH . F 6 HOH A 5 2005 2005 HOH HOH . F 6 HOH A 6 2006 2006 HOH HOH . F 6 HOH A 7 2007 2007 HOH HOH . F 6 HOH A 8 2008 2008 HOH HOH . F 6 HOH A 9 2009 2009 HOH HOH . F 6 HOH A 10 2010 2010 HOH HOH . F 6 HOH A 11 2011 2011 HOH HOH . F 6 HOH A 12 2012 2012 HOH HOH . F 6 HOH A 13 2013 2013 HOH HOH . F 6 HOH A 14 2014 2014 HOH HOH . F 6 HOH A 15 2015 2015 HOH HOH . F 6 HOH A 16 2016 2016 HOH HOH . F 6 HOH A 17 2017 2017 HOH HOH . F 6 HOH A 18 2018 2018 HOH HOH . F 6 HOH A 19 2019 2019 HOH HOH . F 6 HOH A 20 2020 2020 HOH HOH . F 6 HOH A 21 2021 2021 HOH HOH . F 6 HOH A 22 2022 2022 HOH HOH . F 6 HOH A 23 2023 2023 HOH HOH . F 6 HOH A 24 2024 2024 HOH HOH . F 6 HOH A 25 2025 2025 HOH HOH . F 6 HOH A 26 2026 2026 HOH HOH . F 6 HOH A 27 2027 2027 HOH HOH . F 6 HOH A 28 2028 2028 HOH HOH . F 6 HOH A 29 2029 2029 HOH HOH . F 6 HOH A 30 2030 2030 HOH HOH . F 6 HOH A 31 2031 2031 HOH HOH . F 6 HOH A 32 2032 2032 HOH HOH . F 6 HOH A 33 2033 2033 HOH HOH . F 6 HOH A 34 2034 2034 HOH HOH . F 6 HOH A 35 2035 2035 HOH HOH . F 6 HOH A 36 2036 2036 HOH HOH . F 6 HOH A 37 2037 2037 HOH HOH . F 6 HOH A 38 2038 2038 HOH HOH . F 6 HOH A 39 2039 2039 HOH HOH . F 6 HOH A 40 2040 2040 HOH HOH . F 6 HOH A 41 2041 2041 HOH HOH . F 6 HOH A 42 2042 2042 HOH HOH . F 6 HOH A 43 2043 2043 HOH HOH . F 6 HOH A 44 2044 2044 HOH HOH . F 6 HOH A 45 2045 2045 HOH HOH . F 6 HOH A 46 2046 2046 HOH HOH . F 6 HOH A 47 2047 2047 HOH HOH . F 6 HOH A 48 2048 2048 HOH HOH . F 6 HOH A 49 2049 2049 HOH HOH . F 6 HOH A 50 2050 2050 HOH HOH . F 6 HOH A 51 2051 2051 HOH HOH . F 6 HOH A 52 2052 2052 HOH HOH . F 6 HOH A 53 2053 2053 HOH HOH . F 6 HOH A 54 2054 2054 HOH HOH . F 6 HOH A 55 2055 2055 HOH HOH . F 6 HOH A 56 2056 2056 HOH HOH . F 6 HOH A 57 2057 2057 HOH HOH . F 6 HOH A 58 2058 2058 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 3 -19.048 -32.306 15.239 1 182.52 ? PA NAD 800 A 1 HETATM 2 O O1A NAD . . . C 3 -18.119 -33.416 15.745 1 177.31 ? O1A NAD 800 A 1 HETATM 3 O O2A NAD . . . C 3 -18.308 -31.081 14.737 1 181.24 ? O2A NAD 800 A 1 HETATM 4 O O5B NAD . . . C 3 -19.889 -32.794 13.984 1 117.33 ? O5B NAD 800 A 1 HETATM 5 C C5B NAD . . . C 3 -20.813 -33.844 14.074 1 109.45 ? C5B NAD 800 A 1 HETATM 6 C C4B NAD . . . C 3 -20.527 -35.204 13.388 1 101.83 ? C4B NAD 800 A 1 HETATM 7 O O4B NAD . . . C 3 -21.169 -35.321 12.152 1 85.39 ? O4B NAD 800 A 1 HETATM 8 C C3B NAD . . . C 3 -19.078 -35.457 13.106 1 108.09 ? C3B NAD 800 A 1 HETATM 9 O O3B NAD . . . C 3 -18.427 -36.078 14.182 1 113.83 ? O3B NAD 800 A 1 HETATM 10 C C2B NAD . . . C 3 -19.115 -36.301 11.998 1 95.6 ? C2B NAD 800 A 1 HETATM 11 O O2B NAD . . . C 3 -19.546 -37.599 12.28 1 92.69 ? O2B NAD 800 A 1 HETATM 12 C C1B NAD . . . C 3 -20.204 -35.666 11.223 1 82.17 ? C1B NAD 800 A 1 HETATM 13 N N9A NAD . . . C 3 -19.839 -34.471 10.356 1 76.25 ? N9A NAD 800 A 1 HETATM 14 C C8A NAD . . . C 3 -19.934 -33.15 10.659 1 75.88 ? C8A NAD 800 A 1 HETATM 15 N N7A NAD . . . C 3 -19.546 -32.415 9.591 1 67.62 ? N7A NAD 800 A 1 HETATM 16 C C5A NAD . . . C 3 -19.218 -33.273 8.602 1 63.2 ? C5A NAD 800 A 1 HETATM 17 C C6A NAD . . . C 3 -18.761 -33.129 7.297 1 66.34 ? C6A NAD 800 A 1 HETATM 18 N N6A NAD . . . C 3 -18.545 -31.831 6.749 1 73.24 ? N6A NAD 800 A 1 HETATM 19 N N1A NAD . . . C 3 -18.516 -34.23 6.551 1 57.62 ? N1A NAD 800 A 1 HETATM 20 C C2A NAD . . . C 3 -18.71 -35.477 7.041 1 55.83 ? C2A NAD 800 A 1 HETATM 21 N N3A NAD . . . C 3 -19.142 -35.636 8.296 1 55.5 ? N3A NAD 800 A 1 HETATM 22 C C4A NAD . . . C 3 -19.401 -34.569 9.088 1 63.68 ? C4A NAD 800 A 1 HETATM 23 O O3 NAD . . . C 3 -19.99 -31.9 16.418 1 386.7 ? O3 NAD 800 A 1 HETATM 24 P PN NAD . . . C 3 -21.257 -31.004 16.154 1 182.9 ? PN NAD 800 A 1 HETATM 25 O O1N NAD . . . C 3 -22.461 -31.891 15.761 1 181.6 ? O1N NAD 800 A 1 HETATM 26 O O2N NAD . . . C 3 -20.947 -30.043 15.043 1 182.78 ? O2N NAD 800 A 1 HETATM 27 O O5D NAD . . . C 3 -21.658 -30.212 17.416 0 181.25 ? O5D NAD 800 A 1 HETATM 28 C C5D NAD . . . C 3 -20.867 -30.266 18.626 0 179.39 ? C5D NAD 800 A 1 HETATM 29 C C4D NAD . . . C 3 -21.667 -30.221 19.841 0 177.29 ? C4D NAD 800 A 1 HETATM 30 O O4D NAD . . . C 3 -23.005 -30.298 19.518 0 177.92 ? O4D NAD 800 A 1 HETATM 31 C C3D NAD . . . C 3 -21.385 -31.417 20.699 1 174.28 ? C3D NAD 800 A 1 HETATM 32 O O3D NAD . . . C 3 -20.237 -31.259 21.541 1 173.1 ? O3D NAD 800 A 1 HETATM 33 C C2D NAD . . . C 3 -22.584 -31.583 21.426 1 174.21 ? C2D NAD 800 A 1 HETATM 34 O O2D NAD . . . C 3 -22.68 -30.68 22.515 1 171.96 ? O2D NAD 800 A 1 HETATM 35 C C1D NAD . . . C 3 -23.635 -31.233 20.433 0 178.24 ? C1D NAD 800 A 1 HETATM 36 N N1N NAD . . . C 3 -24.21 -32.357 19.722 0 182.28 ? N1N NAD 800 A 1 HETATM 37 C C2N NAD . . . C 3 -23.42 -33.138 18.961 0 184.35 ? C2N NAD 800 A 1 HETATM 38 C C3N NAD . . . C 3 -23.944 -34.223 18.278 0 185.99 ? C3N NAD 800 A 1 HETATM 39 C C7N NAD . . . C 3 -23.036 -35.082 17.428 0 187.47 ? C7N NAD 800 A 1 HETATM 40 O O7N NAD . . . C 3 -22.846 -34.804 16.32 0 187.96 ? O7N NAD 800 A 1 HETATM 41 N N7N NAD . . . C 3 -22.415 -36.222 17.987 0 187.96 ? N7N NAD 800 A 1 HETATM 42 C C4N NAD . . . C 3 -25.315 -34.512 18.385 0 185.72 ? C4N NAD 800 A 1 HETATM 43 C C5N NAD . . . C 3 -26.119 -33.692 19.182 0 185 ? C5N NAD 800 A 1 HETATM 44 C C6N NAD . . . C 3 -25.537 -32.621 19.842 0 183.84 ? C6N NAD 800 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #