data_4BBJ # _model_server_result.job_id GA4ApzrJE1bmn25-FW4s3w _model_server_result.datetime_utc '2024-11-17 15:28:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bbj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":900}' # _entry.id 4BBJ # _exptl.entry_id 4BBJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 538.755 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'O-DODECANYL OCTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.01 _cell.angle_gamma 90 _cell.entry_id 4BBJ _cell.length_a 242.01 _cell.length_b 71.37 _cell.length_c 72.43 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BBJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 425 A VAL 425 1_555 A N BFD 426 A BFD 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C BFD 426 A BFD 426 1_555 A N LYS 427 A LYS 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A OD2 BFD 426 A BFD 426 1_555 B MG MG . A MG 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc2 A O THR 428 A THR 428 1_555 B MG MG . A MG 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc3 A OD1 ASP 624 A ASP 624 1_555 B MG MG . A MG 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc4 B MG MG . A MG 750 1_555 F O HOH . A HOH 2016 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc5 B MG MG . A MG 750 1_555 F O HOH . A HOH 2030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C28 H58 O9' _chem_comp.formula_weight 538.755 _chem_comp.id CE1 _chem_comp.mon_nstd_flag . _chem_comp.name 'O-DODECANYL OCTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms THESIT # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CE1 sing 88 n n C1 H11 CE1 sing 89 n n C1 H12 CE1 sing 90 n n C1 H13 CE1 sing 91 n n C2 C3 CE1 sing 92 n n C2 H21 CE1 sing 93 n n C2 H22 CE1 sing 94 n n C3 C4 CE1 sing 95 n n C3 H31 CE1 sing 96 n n C3 H32 CE1 sing 97 n n C4 C5 CE1 sing 98 n n C4 H41 CE1 sing 99 n n C4 H42 CE1 sing 100 n n C5 C6 CE1 sing 101 n n C5 H51 CE1 sing 102 n n C5 H52 CE1 sing 103 n n C6 C7 CE1 sing 104 n n C6 H61 CE1 sing 105 n n C6 H62 CE1 sing 106 n n C7 C8 CE1 sing 107 n n C7 H71 CE1 sing 108 n n C7 H72 CE1 sing 109 n n C8 C9 CE1 sing 110 n n C8 H81 CE1 sing 111 n n C8 H82 CE1 sing 112 n n C9 C10 CE1 sing 113 n n C9 H91 CE1 sing 114 n n C9 H92 CE1 sing 115 n n C10 C11 CE1 sing 116 n n C10 H101 CE1 sing 117 n n C10 H102 CE1 sing 118 n n C11 C12 CE1 sing 119 n n C11 H111 CE1 sing 120 n n C11 H112 CE1 sing 121 n n C12 O13 CE1 sing 122 n n C12 H121 CE1 sing 123 n n C12 H122 CE1 sing 124 n n O13 C14 CE1 sing 125 n n C14 C15 CE1 sing 126 n n C14 H141 CE1 sing 127 n n C14 H142 CE1 sing 128 n n C15 O16 CE1 sing 129 n n C15 H151 CE1 sing 130 n n C15 H152 CE1 sing 131 n n O16 C17 CE1 sing 132 n n C17 C18 CE1 sing 133 n n C17 H171 CE1 sing 134 n n C17 H172 CE1 sing 135 n n C18 O19 CE1 sing 136 n n C18 H181 CE1 sing 137 n n C18 H182 CE1 sing 138 n n O19 C20 CE1 sing 139 n n C20 C21 CE1 sing 140 n n C20 H201 CE1 sing 141 n n C20 H202 CE1 sing 142 n n C21 O22 CE1 sing 143 n n C21 H211 CE1 sing 144 n n C21 H212 CE1 sing 145 n n O22 C23 CE1 sing 146 n n C23 C24 CE1 sing 147 n n C23 H231 CE1 sing 148 n n C23 H232 CE1 sing 149 n n C24 O25 CE1 sing 150 n n C24 H241 CE1 sing 151 n n C24 H242 CE1 sing 152 n n O25 C26 CE1 sing 153 n n C26 C27 CE1 sing 154 n n C26 H261 CE1 sing 155 n n C26 H262 CE1 sing 156 n n C27 O28 CE1 sing 157 n n C27 H271 CE1 sing 158 n n C27 H272 CE1 sing 159 n n O28 C29 CE1 sing 160 n n C29 C30 CE1 sing 161 n n C29 H291 CE1 sing 162 n n C29 H292 CE1 sing 163 n n C30 O31 CE1 sing 164 n n C30 H301 CE1 sing 165 n n C30 H302 CE1 sing 166 n n O31 C32 CE1 sing 167 n n C32 C33 CE1 sing 168 n n C32 H321 CE1 sing 169 n n C32 H322 CE1 sing 170 n n C33 O34 CE1 sing 171 n n C33 H331 CE1 sing 172 n n C33 H332 CE1 sing 173 n n O34 C35 CE1 sing 174 n n C35 C36 CE1 sing 175 n n C35 H351 CE1 sing 176 n n C35 H352 CE1 sing 177 n n C36 O37 CE1 sing 178 n n C36 H361 CE1 sing 179 n n C36 H362 CE1 sing 180 n n O37 H37 CE1 sing 181 n n # _atom_sites.entry_id 4BBJ _atom_sites.fract_transf_matrix[1][1] 0.004132 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000729 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01402 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 750 750 MG MG . C 3 NAD A 1 800 800 NAD NAD . D 4 CE1 A 1 900 900 CE1 CE1 . E 5 PC A 1 950 950 PC PC . F 6 HOH A 1 2001 2001 HOH HOH . F 6 HOH A 2 2002 2002 HOH HOH . F 6 HOH A 3 2003 2003 HOH HOH . F 6 HOH A 4 2004 2004 HOH HOH . F 6 HOH A 5 2005 2005 HOH HOH . F 6 HOH A 6 2006 2006 HOH HOH . F 6 HOH A 7 2007 2007 HOH HOH . F 6 HOH A 8 2008 2008 HOH HOH . F 6 HOH A 9 2009 2009 HOH HOH . F 6 HOH A 10 2010 2010 HOH HOH . F 6 HOH A 11 2011 2011 HOH HOH . F 6 HOH A 12 2012 2012 HOH HOH . F 6 HOH A 13 2013 2013 HOH HOH . F 6 HOH A 14 2014 2014 HOH HOH . F 6 HOH A 15 2015 2015 HOH HOH . F 6 HOH A 16 2016 2016 HOH HOH . F 6 HOH A 17 2017 2017 HOH HOH . F 6 HOH A 18 2018 2018 HOH HOH . F 6 HOH A 19 2019 2019 HOH HOH . F 6 HOH A 20 2020 2020 HOH HOH . F 6 HOH A 21 2021 2021 HOH HOH . F 6 HOH A 22 2022 2022 HOH HOH . F 6 HOH A 23 2023 2023 HOH HOH . F 6 HOH A 24 2024 2024 HOH HOH . F 6 HOH A 25 2025 2025 HOH HOH . F 6 HOH A 26 2026 2026 HOH HOH . F 6 HOH A 27 2027 2027 HOH HOH . F 6 HOH A 28 2028 2028 HOH HOH . F 6 HOH A 29 2029 2029 HOH HOH . F 6 HOH A 30 2030 2030 HOH HOH . F 6 HOH A 31 2031 2031 HOH HOH . F 6 HOH A 32 2032 2032 HOH HOH . F 6 HOH A 33 2033 2033 HOH HOH . F 6 HOH A 34 2034 2034 HOH HOH . F 6 HOH A 35 2035 2035 HOH HOH . F 6 HOH A 36 2036 2036 HOH HOH . F 6 HOH A 37 2037 2037 HOH HOH . F 6 HOH A 38 2038 2038 HOH HOH . F 6 HOH A 39 2039 2039 HOH HOH . F 6 HOH A 40 2040 2040 HOH HOH . F 6 HOH A 41 2041 2041 HOH HOH . F 6 HOH A 42 2042 2042 HOH HOH . F 6 HOH A 43 2043 2043 HOH HOH . F 6 HOH A 44 2044 2044 HOH HOH . F 6 HOH A 45 2045 2045 HOH HOH . F 6 HOH A 46 2046 2046 HOH HOH . F 6 HOH A 47 2047 2047 HOH HOH . F 6 HOH A 48 2048 2048 HOH HOH . F 6 HOH A 49 2049 2049 HOH HOH . F 6 HOH A 50 2050 2050 HOH HOH . F 6 HOH A 51 2051 2051 HOH HOH . F 6 HOH A 52 2052 2052 HOH HOH . F 6 HOH A 53 2053 2053 HOH HOH . F 6 HOH A 54 2054 2054 HOH HOH . F 6 HOH A 55 2055 2055 HOH HOH . F 6 HOH A 56 2056 2056 HOH HOH . F 6 HOH A 57 2057 2057 HOH HOH . F 6 HOH A 58 2058 2058 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CE1 . . . D 4 55.321 -41.958 34.209 1 42.85 ? C1 CE1 900 A 1 HETATM 2 C C2 CE1 . . . D 4 55.468 -42.918 33.062 1 60.65 ? C2 CE1 900 A 1 HETATM 3 C C3 CE1 . . . D 4 55.254 -42.251 31.728 1 69.61 ? C3 CE1 900 A 1 HETATM 4 C C4 CE1 . . . D 4 54.61 -43.148 30.701 1 71.68 ? C4 CE1 900 A 1 HETATM 5 C C5 CE1 . . . D 4 54.096 -42.332 29.545 1 74.44 ? C5 CE1 900 A 1 HETATM 6 C C6 CE1 . . . D 4 53 -42.991 28.744 1 78.46 ? C6 CE1 900 A 1 HETATM 7 C C7 CE1 . . . D 4 51.877 -42.017 28.495 1 80.75 ? C7 CE1 900 A 1 HETATM 8 C C8 CE1 . . . D 4 51.194 -42.191 27.167 1 82.5 ? C8 CE1 900 A 1 HETATM 9 C C9 CE1 . . . D 4 50.273 -41.026 26.904 1 80.61 ? C9 CE1 900 A 1 HETATM 10 C C10 CE1 . . . D 4 49.256 -41.285 25.824 1 68.16 ? C10 CE1 900 A 1 HETATM 11 C C11 CE1 . . . D 4 47.997 -40.52 26.096 1 57.21 ? C11 CE1 900 A 1 HETATM 12 C C12 CE1 . . . D 4 46.975 -40.718 25.025 1 55.75 ? C12 CE1 900 A 1 HETATM 13 O O13 CE1 . . . D 4 46.088 -41.747 25.316 1 64.86 ? O13 CE1 900 A 1 HETATM 14 C C14 CE1 . . . D 4 44.744 -41.704 24.921 1 66.47 ? C14 CE1 900 A 1 HETATM 15 C C15 CE1 . . . D 4 44.378 -42.727 23.876 1 60.28 ? C15 CE1 900 A 1 HETATM 16 O O16 CE1 . . . D 4 43.654 -43.783 24.42 1 58.05 ? O16 CE1 900 A 1 HETATM 17 C C17 CE1 . . . D 4 43.167 -44.815 23.629 1 59.05 ? C17 CE1 900 A 1 HETATM 18 C C18 CE1 . . . D 4 43.142 -46.117 24.378 1 69.88 ? C18 CE1 900 A 1 HETATM 19 O O19 CE1 . . . D 4 41.869 -46.55 24.734 1 66.25 ? O19 CE1 900 A 1 HETATM 20 C C20 CE1 . . . D 4 41.492 -46.648 26.07 1 57.36 ? C20 CE1 900 A 1 HETATM 21 C C21 CE1 . . . D 4 41.462 -45.289 26.702 1 58.89 ? C21 CE1 900 A 1 HETATM 22 O O22 CE1 . . . D 4 41.024 -45.344 28.015 1 64.26 ? O22 CE1 900 A 1 HETATM 23 C C23 CE1 . . . D 4 41.172 -44.235 28.84 1 59.2 ? C23 CE1 900 A 1 HETATM 24 C C24 CE1 . . . D 4 41.69 -44.578 30.204 1 48.09 ? C24 CE1 900 A 1 HETATM 25 O O25 CE1 . . . D 4 40.682 -45.053 31.022 1 52.22 ? O25 CE1 900 A 1 HETATM 26 C C26 CE1 . . . D 4 40.459 -44.531 32.289 1 53.57 ? C26 CE1 900 A 1 HETATM 27 C C27 CE1 . . . D 4 39.387 -45.297 33.003 1 62.3 ? C27 CE1 900 A 1 HETATM 28 O O28 CE1 . . . D 4 38.129 -44.799 32.691 1 86.22 ? O28 CE1 900 A 1 HETATM 29 C C29 CE1 . . . D 4 36.985 -45.592 32.677 1 92.48 ? C29 CE1 900 A 1 HETATM 30 C C30 CE1 . . . D 4 36.901 -46.428 31.433 1 99.31 ? C30 CE1 900 A 1 HETATM 31 O O31 CE1 . . . D 4 35.639 -46.353 30.859 1 105.44 ? O31 CE1 900 A 1 HETATM 32 C C32 CE1 . . . D 4 35.222 -47.234 29.862 1 108.06 ? C32 CE1 900 A 1 HETATM 33 C C33 CE1 . . . D 4 36.187 -47.312 28.711 1 111.49 ? C33 CE1 900 A 1 HETATM 34 O O34 CE1 . . . D 4 35.592 -47.07 27.471 1 110.21 ? O34 CE1 900 A 1 HETATM 35 C C35 CE1 . . . D 4 36.382 -46.765 26.363 1 97.25 ? C35 CE1 900 A 1 HETATM 36 C C36 CE1 . . . D 4 35.599 -46.495 25.113 1 81.56 ? C36 CE1 900 A 1 HETATM 37 O O37 CE1 . . . D 4 35.403 -45.14 24.906 1 72.13 ? O37 CE1 900 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 37 #