data_4BDB # _model_server_result.job_id KBFDS8TMg4HwwErlEzjqBg _model_server_result.datetime_utc '2024-11-25 08:44:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bdb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1515}' # _entry.id 4BDB # _exptl.entry_id 4BDB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 167.162 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(E)-C-methyl-N-oxidanyl-carbonimidoyl]benzene-1,3-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4BDB _cell.length_a 91.13 _cell.length_b 91.13 _cell.length_c 92.91 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BDB _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H9 N O3' _chem_comp.formula_weight 167.162 _chem_comp.id ODO _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(E)-C-methyl-N-oxidanyl-carbonimidoyl]benzene-1,3-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 N ODO sing 249 n n C8 C7 ODO sing 250 n n C7 C2 ODO sing 251 n n C7 N ODO doub 252 e n C2 C3 ODO sing 253 n y C2 C1 ODO doub 254 n y O10 C3 ODO sing 255 n n C3 C4 ODO doub 256 n y C4 C5 ODO sing 257 n y C5 O12 ODO sing 258 n n C5 C6 ODO doub 259 n y C6 C1 ODO sing 260 n y O11 H11 ODO sing 261 n n C8 H81C ODO sing 262 n n C8 H82C ODO sing 263 n n C8 H83C ODO sing 264 n n C1 H1 ODO sing 265 n n O10 H10 ODO sing 266 n n C4 H4 ODO sing 267 n n O12 H12 ODO sing 268 n n C6 H6 ODO sing 269 n n # _atom_sites.entry_id 4BDB _atom_sites.fract_transf_matrix[1][1] 0.010973 _atom_sites.fract_transf_matrix[1][2] 0.006335 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012671 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010763 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 A 1 1513 1513 NO3 NO3 . C 3 EDO A 1 1514 1514 EDO EDO . D 4 ODO A 1 1515 1515 ODO ODO . E 3 EDO A 1 1516 1516 EDO EDO . F 3 EDO A 1 1517 1517 EDO EDO . G 3 EDO A 1 1518 1518 EDO EDO . H 3 EDO A 1 1519 1519 EDO EDO . I 3 EDO A 1 1520 1520 EDO EDO . J 3 EDO A 1 1521 1521 EDO EDO . K 3 EDO A 1 1522 1522 EDO EDO . L 3 EDO A 1 1523 1523 EDO EDO . M 5 HOH A 1 2001 2001 HOH HOH . M 5 HOH A 2 2002 2002 HOH HOH . M 5 HOH A 3 2003 2003 HOH HOH . M 5 HOH A 4 2004 2004 HOH HOH . M 5 HOH A 5 2005 2005 HOH HOH . M 5 HOH A 6 2006 2006 HOH HOH . M 5 HOH A 7 2007 2007 HOH HOH . M 5 HOH A 8 2008 2008 HOH HOH . M 5 HOH A 9 2009 2009 HOH HOH . M 5 HOH A 10 2010 2010 HOH HOH . M 5 HOH A 11 2011 2011 HOH HOH . M 5 HOH A 12 2012 2012 HOH HOH . M 5 HOH A 13 2013 2013 HOH HOH . M 5 HOH A 14 2014 2014 HOH HOH . M 5 HOH A 15 2015 2015 HOH HOH . M 5 HOH A 16 2016 2016 HOH HOH . M 5 HOH A 17 2017 2017 HOH HOH . M 5 HOH A 18 2018 2018 HOH HOH . M 5 HOH A 19 2019 2019 HOH HOH . M 5 HOH A 20 2020 2020 HOH HOH . M 5 HOH A 21 2021 2021 HOH HOH . M 5 HOH A 22 2022 2022 HOH HOH . M 5 HOH A 23 2023 2023 HOH HOH . M 5 HOH A 24 2024 2024 HOH HOH . M 5 HOH A 25 2025 2025 HOH HOH . M 5 HOH A 26 2026 2026 HOH HOH . M 5 HOH A 27 2027 2027 HOH HOH . M 5 HOH A 28 2028 2028 HOH HOH . M 5 HOH A 29 2029 2029 HOH HOH . M 5 HOH A 30 2030 2030 HOH HOH . M 5 HOH A 31 2031 2031 HOH HOH . M 5 HOH A 32 2032 2032 HOH HOH . M 5 HOH A 33 2033 2033 HOH HOH . M 5 HOH A 34 2034 2034 HOH HOH . M 5 HOH A 35 2035 2035 HOH HOH . M 5 HOH A 36 2036 2036 HOH HOH . M 5 HOH A 37 2037 2037 HOH HOH . M 5 HOH A 38 2038 2038 HOH HOH . M 5 HOH A 39 2039 2039 HOH HOH . M 5 HOH A 40 2040 2040 HOH HOH . M 5 HOH A 41 2041 2041 HOH HOH . M 5 HOH A 42 2042 2042 HOH HOH . M 5 HOH A 43 2043 2043 HOH HOH . M 5 HOH A 44 2044 2044 HOH HOH . M 5 HOH A 45 2045 2045 HOH HOH . M 5 HOH A 46 2046 2046 HOH HOH . M 5 HOH A 47 2047 2047 HOH HOH . M 5 HOH A 48 2048 2048 HOH HOH . M 5 HOH A 49 2049 2049 HOH HOH . M 5 HOH A 50 2050 2050 HOH HOH . M 5 HOH A 51 2051 2051 HOH HOH . M 5 HOH A 52 2052 2052 HOH HOH . M 5 HOH A 53 2053 2053 HOH HOH . M 5 HOH A 54 2054 2054 HOH HOH . M 5 HOH A 55 2055 2055 HOH HOH . M 5 HOH A 56 2056 2056 HOH HOH . M 5 HOH A 57 2057 2057 HOH HOH . M 5 HOH A 58 2058 2058 HOH HOH . M 5 HOH A 59 2059 2059 HOH HOH . M 5 HOH A 60 2060 2060 HOH HOH . M 5 HOH A 61 2061 2061 HOH HOH . M 5 HOH A 62 2062 2062 HOH HOH . M 5 HOH A 63 2063 2063 HOH HOH . M 5 HOH A 64 2064 2064 HOH HOH . M 5 HOH A 65 2065 2065 HOH HOH . M 5 HOH A 66 2066 2066 HOH HOH . M 5 HOH A 67 2067 2067 HOH HOH . M 5 HOH A 68 2068 2068 HOH HOH . M 5 HOH A 69 2069 2069 HOH HOH . M 5 HOH A 70 2070 2070 HOH HOH . M 5 HOH A 71 2071 2071 HOH HOH . M 5 HOH A 72 2072 2072 HOH HOH . M 5 HOH A 73 2073 2073 HOH HOH . M 5 HOH A 74 2074 2074 HOH HOH . M 5 HOH A 75 2075 2075 HOH HOH . M 5 HOH A 76 2076 2076 HOH HOH . M 5 HOH A 77 2077 2077 HOH HOH . M 5 HOH A 78 2078 2078 HOH HOH . M 5 HOH A 79 2079 2079 HOH HOH . M 5 HOH A 80 2080 2080 HOH HOH . M 5 HOH A 81 2081 2081 HOH HOH . M 5 HOH A 82 2082 2082 HOH HOH . M 5 HOH A 83 2083 2083 HOH HOH . M 5 HOH A 84 2084 2084 HOH HOH . M 5 HOH A 85 2085 2085 HOH HOH . M 5 HOH A 86 2086 2086 HOH HOH . M 5 HOH A 87 2087 2087 HOH HOH . M 5 HOH A 88 2088 2088 HOH HOH . M 5 HOH A 89 2089 2089 HOH HOH . M 5 HOH A 90 2090 2090 HOH HOH . M 5 HOH A 91 2091 2091 HOH HOH . M 5 HOH A 92 2092 2092 HOH HOH . M 5 HOH A 93 2093 2093 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O11 ODO . . . D 4 -35.163 35.047 10.252 1 99.24 ? O11 ODO 1515 A 1 HETATM 2 C C8 ODO . . . D 4 -36.308 36.221 8.12 1 98.13 ? C8 ODO 1515 A 1 HETATM 3 C C7 ODO . . . D 4 -36.573 34.794 8.521 1 99.02 ? C7 ODO 1515 A 1 HETATM 4 C C2 ODO . . . D 4 -37.516 33.953 7.749 1 99.24 ? C2 ODO 1515 A 1 HETATM 5 O O10 ODO . . . D 4 -37.138 35.129 5.655 1 97.14 ? O10 ODO 1515 A 1 HETATM 6 C C3 ODO . . . D 4 -37.658 34.081 6.345 1 98.45 ? C3 ODO 1515 A 1 HETATM 7 C C4 ODO . . . D 4 -38.362 33.136 5.611 1 99.99 ? C4 ODO 1515 A 1 HETATM 8 C C5 ODO . . . D 4 -38.938 32.049 6.257 1 101.35 ? C5 ODO 1515 A 1 HETATM 9 O O12 ODO . . . D 4 -39.55 31.072 5.522 1 102.3 ? O12 ODO 1515 A 1 HETATM 10 C C6 ODO . . . D 4 -38.85 31.928 7.635 1 100.73 ? C6 ODO 1515 A 1 HETATM 11 C C1 ODO . . . D 4 -38.155 32.874 8.367 1 100.08 ? C1 ODO 1515 A 1 HETATM 12 N N ODO . . . D 4 -36.05 34.218 9.541 1 99.96 ? N ODO 1515 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #