data_4BDF # _model_server_result.job_id z3DKa5VESzPO4x_-IhvQZQ _model_server_result.datetime_utc '2024-11-26 18:58:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bdf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1513}' # _entry.id 4BDF # _exptl.entry_id 4BDF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 158.2 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-METHYL-3-PHENYL-1H-PYRAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4BDF _cell.length_a 90.95 _cell.length_b 90.95 _cell.length_c 93.03 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BDF _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 62.02 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H10 N2' _chem_comp.formula_weight 158.2 _chem_comp.id H3R _chem_comp.mon_nstd_flag . _chem_comp.name 5-METHYL-3-PHENYL-1H-PYRAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 H3R sing 138 n n C1 C3 H3R sing 139 n y C1 N3 H3R doub 140 n y C3 C12 H3R doub 141 n y C7 C9 H3R sing 142 n y C7 C4 H3R doub 143 n y C8 C10 H3R doub 144 n y C8 C4 H3R sing 145 n y C9 C11 H3R doub 146 n y C10 C11 H3R sing 147 n y C12 N13 H3R sing 148 n y C12 C4 H3R sing 149 n n N13 N3 H3R sing 150 n y C2 H21C H3R sing 151 n n C2 H22C H3R sing 152 n n C2 H23C H3R sing 153 n n C3 H3 H3R sing 154 n n C7 H7 H3R sing 155 n n C9 H9 H3R sing 156 n n C8 H8 H3R sing 157 n n C10 H10 H3R sing 158 n n C11 H11 H3R sing 159 n n N13 H13 H3R sing 160 n n # _atom_sites.entry_id 4BDF _atom_sites.fract_transf_matrix[1][1] 0.010995 _atom_sites.fract_transf_matrix[1][2] 0.006348 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012696 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H3R A 1 1513 1513 H3R H3R . C 3 NO3 A 1 1514 1514 NO3 NO3 . D 4 EDO A 1 1515 1515 EDO EDO . E 4 EDO A 1 1516 1516 EDO EDO . F 5 HOH A 1 2001 2001 HOH HOH . F 5 HOH A 2 2002 2002 HOH HOH . F 5 HOH A 3 2003 2003 HOH HOH . F 5 HOH A 4 2004 2004 HOH HOH . F 5 HOH A 5 2005 2005 HOH HOH . F 5 HOH A 6 2006 2006 HOH HOH . F 5 HOH A 7 2007 2007 HOH HOH . F 5 HOH A 8 2008 2008 HOH HOH . F 5 HOH A 9 2009 2009 HOH HOH . F 5 HOH A 10 2010 2010 HOH HOH . F 5 HOH A 11 2011 2011 HOH HOH . F 5 HOH A 12 2012 2012 HOH HOH . F 5 HOH A 13 2013 2013 HOH HOH . F 5 HOH A 14 2014 2014 HOH HOH . F 5 HOH A 15 2015 2015 HOH HOH . F 5 HOH A 16 2016 2016 HOH HOH . F 5 HOH A 17 2017 2017 HOH HOH . F 5 HOH A 18 2018 2018 HOH HOH . F 5 HOH A 19 2019 2019 HOH HOH . F 5 HOH A 20 2020 2020 HOH HOH . F 5 HOH A 21 2021 2021 HOH HOH . F 5 HOH A 22 2022 2022 HOH HOH . F 5 HOH A 23 2023 2023 HOH HOH . F 5 HOH A 24 2024 2024 HOH HOH . F 5 HOH A 25 2025 2025 HOH HOH . F 5 HOH A 26 2026 2026 HOH HOH . F 5 HOH A 27 2027 2027 HOH HOH . F 5 HOH A 28 2028 2028 HOH HOH . F 5 HOH A 29 2029 2029 HOH HOH . F 5 HOH A 30 2030 2030 HOH HOH . F 5 HOH A 31 2031 2031 HOH HOH . F 5 HOH A 32 2032 2032 HOH HOH . F 5 HOH A 33 2033 2033 HOH HOH . F 5 HOH A 34 2034 2034 HOH HOH . F 5 HOH A 35 2035 2035 HOH HOH . F 5 HOH A 36 2036 2036 HOH HOH . F 5 HOH A 37 2037 2037 HOH HOH . F 5 HOH A 38 2038 2038 HOH HOH . F 5 HOH A 39 2039 2039 HOH HOH . F 5 HOH A 40 2040 2040 HOH HOH . F 5 HOH A 41 2041 2041 HOH HOH . F 5 HOH A 42 2042 2042 HOH HOH . F 5 HOH A 43 2043 2043 HOH HOH . F 5 HOH A 44 2044 2044 HOH HOH . F 5 HOH A 45 2045 2045 HOH HOH . F 5 HOH A 46 2046 2046 HOH HOH . F 5 HOH A 47 2047 2047 HOH HOH . F 5 HOH A 48 2048 2048 HOH HOH . F 5 HOH A 49 2049 2049 HOH HOH . F 5 HOH A 50 2050 2050 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 H3R . . . B 2 -36.572 34.999 7.74 1 79.83 ? C1 H3R 1513 A 1 HETATM 2 C C2 H3R . . . B 2 -35.85 35.671 8.863 1 78.2 ? C2 H3R 1513 A 1 HETATM 3 C C3 H3R . . . B 2 -37.411 33.914 7.721 1 81.36 ? C3 H3R 1513 A 1 HETATM 4 C C7 H3R . . . B 2 -39.219 32.808 4.57 1 86.46 ? C7 H3R 1513 A 1 HETATM 5 C C8 H3R . . . B 2 -38.694 31.398 6.441 1 83.15 ? C8 H3R 1513 A 1 HETATM 6 C C9 H3R . . . B 2 -40.01 31.801 4.038 1 85.61 ? C9 H3R 1513 A 1 HETATM 7 C C10 H3R . . . B 2 -39.493 30.399 5.907 1 83.63 ? C10 H3R 1513 A 1 HETATM 8 C C11 H3R . . . B 2 -40.154 30.601 4.709 1 85.21 ? C11 H3R 1513 A 1 HETATM 9 C C12 H3R . . . B 2 -37.737 33.699 6.37 1 80.74 ? C12 H3R 1513 A 1 HETATM 10 N N13 H3R . . . B 2 -37.145 34.619 5.596 1 78.2 ? N13 H3R 1513 A 1 HETATM 11 C C4 H3R . . . B 2 -38.552 32.619 5.781 1 84.44 ? C4 H3R 1513 A 1 HETATM 12 N N3 H3R . . . B 2 -36.437 35.4 6.466 1 78.97 ? N3 H3R 1513 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #