data_4BDH # _model_server_result.job_id 9Xq_DJRF7lEEWTjWXjU1LA _model_server_result.datetime_utc '2024-11-17 15:52:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bdh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1514}' # _entry.id 4BDH # _exptl.entry_id 4BDH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 179.242 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-METHYL-4-(THIOPHEN-2-YL)-1H-PYRAZOL-5-AMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4BDH _cell.length_a 91.08 _cell.length_b 91.08 _cell.length_c 92.96 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BDH _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 61.973333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H9 N3 S' _chem_comp.formula_weight 179.242 _chem_comp.id WVI _chem_comp.mon_nstd_flag . _chem_comp.name 3-METHYL-4-(THIOPHEN-2-YL)-1H-PYRAZOL-5-AMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C6 WVI sing 388 n n N3 C4 WVI sing 389 n n C4 C5 WVI doub 390 n y C4 N WVI sing 391 n y C5 C6 WVI sing 392 n y C5 C10 WVI sing 393 n n C6 N7 WVI doub 394 n y N7 N WVI sing 395 n y C9 C10 WVI doub 396 n y C9 C13 WVI sing 397 n y C10 S11 WVI sing 398 n y S11 C12 WVI sing 399 n y C12 C13 WVI doub 400 n y C1 H11C WVI sing 401 n n C1 H12C WVI sing 402 n n C1 H13C WVI sing 403 n n N3 H31N WVI sing 404 n n N3 H32N WVI sing 405 n n N H WVI sing 406 n n C9 H9 WVI sing 407 n n C13 H13 WVI sing 408 n n C12 H12 WVI sing 409 n n # _atom_sites.entry_id 4BDH _atom_sites.fract_transf_matrix[1][1] 0.010979 _atom_sites.fract_transf_matrix[1][2] 0.006339 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012678 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010757 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 A 1 1513 1513 NO3 NO3 . C 3 WVI A 1 1514 1514 WVI WVI . D 4 EDO A 1 1515 1515 EDO EDO . E 4 EDO A 1 1516 1516 EDO EDO . F 5 CL A 1 1517 1517 CL CL . G 4 EDO A 1 1518 1518 EDO EDO . H 6 HOH A 1 2001 2001 HOH HOH . H 6 HOH A 2 2002 2002 HOH HOH . H 6 HOH A 3 2003 2003 HOH HOH . H 6 HOH A 4 2004 2004 HOH HOH . H 6 HOH A 5 2005 2005 HOH HOH . H 6 HOH A 6 2006 2006 HOH HOH . H 6 HOH A 7 2007 2007 HOH HOH . H 6 HOH A 8 2008 2008 HOH HOH . H 6 HOH A 9 2009 2009 HOH HOH . H 6 HOH A 10 2010 2010 HOH HOH . H 6 HOH A 11 2011 2011 HOH HOH . H 6 HOH A 12 2012 2012 HOH HOH . H 6 HOH A 13 2013 2013 HOH HOH . H 6 HOH A 14 2014 2014 HOH HOH . H 6 HOH A 15 2015 2015 HOH HOH . H 6 HOH A 16 2016 2016 HOH HOH . H 6 HOH A 17 2017 2017 HOH HOH . H 6 HOH A 18 2018 2018 HOH HOH . H 6 HOH A 19 2019 2019 HOH HOH . H 6 HOH A 20 2020 2020 HOH HOH . H 6 HOH A 21 2021 2021 HOH HOH . H 6 HOH A 22 2022 2022 HOH HOH . H 6 HOH A 23 2023 2023 HOH HOH . H 6 HOH A 24 2024 2024 HOH HOH . H 6 HOH A 25 2025 2025 HOH HOH . H 6 HOH A 26 2026 2026 HOH HOH . H 6 HOH A 27 2027 2027 HOH HOH . H 6 HOH A 28 2028 2028 HOH HOH . H 6 HOH A 29 2029 2029 HOH HOH . H 6 HOH A 30 2030 2030 HOH HOH . H 6 HOH A 31 2031 2031 HOH HOH . H 6 HOH A 32 2032 2032 HOH HOH . H 6 HOH A 33 2033 2033 HOH HOH . H 6 HOH A 34 2034 2034 HOH HOH . H 6 HOH A 35 2035 2035 HOH HOH . H 6 HOH A 36 2036 2036 HOH HOH . H 6 HOH A 37 2037 2037 HOH HOH . H 6 HOH A 38 2038 2038 HOH HOH . H 6 HOH A 39 2039 2039 HOH HOH . H 6 HOH A 40 2040 2040 HOH HOH . H 6 HOH A 41 2041 2041 HOH HOH . H 6 HOH A 42 2042 2042 HOH HOH . H 6 HOH A 43 2043 2043 HOH HOH . H 6 HOH A 44 2044 2044 HOH HOH . H 6 HOH A 45 2045 2045 HOH HOH . H 6 HOH A 46 2046 2046 HOH HOH . H 6 HOH A 47 2047 2047 HOH HOH . H 6 HOH A 48 2048 2048 HOH HOH . H 6 HOH A 49 2049 2049 HOH HOH . H 6 HOH A 50 2050 2050 HOH HOH . H 6 HOH A 51 2051 2051 HOH HOH . H 6 HOH A 52 2052 2052 HOH HOH . H 6 HOH A 53 2053 2053 HOH HOH . H 6 HOH A 54 2054 2054 HOH HOH . H 6 HOH A 55 2055 2055 HOH HOH . H 6 HOH A 56 2056 2056 HOH HOH . H 6 HOH A 57 2057 2057 HOH HOH . H 6 HOH A 58 2058 2058 HOH HOH . H 6 HOH A 59 2059 2059 HOH HOH . H 6 HOH A 60 2060 2060 HOH HOH . H 6 HOH A 61 2061 2061 HOH HOH . H 6 HOH A 62 2062 2062 HOH HOH . H 6 HOH A 63 2063 2063 HOH HOH . H 6 HOH A 64 2064 2064 HOH HOH . H 6 HOH A 65 2065 2065 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 WVI . . . C 3 -36.236 35.63 9.124 1 88.1 ? C1 WVI 1514 A 1 HETATM 2 N N3 WVI . . . C 3 -38.552 32.699 5.784 1 93.57 ? N3 WVI 1514 A 1 HETATM 3 C C4 WVI . . . C 3 -37.869 33.675 6.386 1 92.28 ? C4 WVI 1514 A 1 HETATM 4 C C5 WVI . . . C 3 -37.521 33.775 7.778 1 95.95 ? C5 WVI 1514 A 1 HETATM 5 C C6 WVI . . . C 3 -36.825 34.97 7.918 1 91.27 ? C6 WVI 1514 A 1 HETATM 6 N N7 WVI . . . C 3 -36.746 35.523 6.697 1 89.39 ? N7 WVI 1514 A 1 HETATM 7 C C9 WVI . . . C 3 -37.014 32.499 9.965 1 103.9 ? C9 WVI 1514 A 1 HETATM 8 C C10 WVI . . . C 3 -37.79 32.753 8.804 1 102.51 ? C10 WVI 1514 A 1 HETATM 9 S S11 WVI . . . C 3 -39.128 31.671 8.721 1 106.57 ? S11 WVI 1514 A 1 HETATM 10 C C12 WVI . . . C 3 -38.674 30.908 10.189 1 106.31 ? C12 WVI 1514 A 1 HETATM 11 N N WVI . . . C 3 -37.369 34.769 5.745 1 88.97 ? N WVI 1514 A 1 HETATM 12 C C13 WVI . . . C 3 -37.555 31.435 10.731 1 105.52 ? C13 WVI 1514 A 1 # _model_server_stats.io_time_ms 92 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #