data_4BDI # _model_server_result.job_id '_pkGf6t4HWyFhlAMHC9zug' _model_server_result.datetime_utc '2025-02-26 15:17:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bdi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1516}' # _entry.id 4BDI # _exptl.entry_id 4BDI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 261.32 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-acetyl-N-(5-methylpyridin-2-yl)piperidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4BDI _cell.length_a 90.23 _cell.length_b 90.23 _cell.length_c 92.9 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BDI _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -30.966667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H19 N3 O2' _chem_comp.formula_weight 261.32 _chem_comp.id HAU _chem_comp.mon_nstd_flag . _chem_comp.name 1-acetyl-N-(5-methylpyridin-2-yl)piperidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O HAU doub 138 n n C C1 HAU sing 139 n n C N1 HAU sing 140 n n N1 C3 HAU sing 141 n n N1 C7 HAU sing 142 n n O1 C8 HAU doub 143 n n N2 C9 HAU doub 144 n y N2 C13 HAU sing 145 n y C3 C4 HAU sing 146 n n N3 C8 HAU sing 147 n n N3 C9 HAU sing 148 n n C4 C5 HAU sing 149 n n C5 C6 HAU sing 150 n n C5 C8 HAU sing 151 n n C6 C7 HAU sing 152 n n C9 C10 HAU sing 153 n y C10 C11 HAU doub 154 n y C11 C12 HAU sing 155 n y C12 C13 HAU doub 156 n y C12 C14 HAU sing 157 n n C1 H1 HAU sing 158 n n C1 H1A HAU sing 159 n n C1 H1B HAU sing 160 n n C3 H3 HAU sing 161 n n C3 H3A HAU sing 162 n n N3 HN3 HAU sing 163 n n C4 H4 HAU sing 164 n n C4 H4A HAU sing 165 n n C5 H5 HAU sing 166 n n C6 H6 HAU sing 167 n n C6 H6A HAU sing 168 n n C7 H7 HAU sing 169 n n C7 H7A HAU sing 170 n n C10 H10 HAU sing 171 n n C11 H11 HAU sing 172 n n C13 H13 HAU sing 173 n n C14 H14 HAU sing 174 n n C14 H14A HAU sing 175 n n C14 H14B HAU sing 176 n n # _atom_sites.entry_id 4BDI _atom_sites.fract_transf_matrix[1][1] 0.011083 _atom_sites.fract_transf_matrix[1][2] 0.006399 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012797 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HAU A 1 1516 1516 HAU HAU . C 3 NO3 A 1 1517 1517 NO3 NO3 . D 4 CL A 1 1518 1518 CL CL . E 5 EDO A 1 1519 1519 EDO EDO . F 5 EDO A 1 1520 1520 EDO EDO . G 5 EDO A 1 1521 1521 EDO EDO . H 5 EDO A 1 1522 1522 EDO EDO . I 5 EDO A 1 1523 1523 EDO EDO . J 5 EDO A 1 1524 1524 EDO EDO . K 5 EDO A 1 1525 1525 EDO EDO . L 6 HOH A 1 2001 2001 HOH HOH . L 6 HOH A 2 2002 2002 HOH HOH . L 6 HOH A 3 2003 2003 HOH HOH . L 6 HOH A 4 2004 2004 HOH HOH . L 6 HOH A 5 2005 2005 HOH HOH . L 6 HOH A 6 2006 2006 HOH HOH . L 6 HOH A 7 2007 2007 HOH HOH . L 6 HOH A 8 2008 2008 HOH HOH . L 6 HOH A 9 2009 2009 HOH HOH . L 6 HOH A 10 2010 2010 HOH HOH . L 6 HOH A 11 2011 2011 HOH HOH . L 6 HOH A 12 2012 2012 HOH HOH . L 6 HOH A 13 2013 2013 HOH HOH . L 6 HOH A 14 2014 2014 HOH HOH . L 6 HOH A 15 2015 2015 HOH HOH . L 6 HOH A 16 2016 2016 HOH HOH . L 6 HOH A 17 2017 2017 HOH HOH . L 6 HOH A 18 2018 2018 HOH HOH . L 6 HOH A 19 2019 2019 HOH HOH . L 6 HOH A 20 2020 2020 HOH HOH . L 6 HOH A 21 2021 2021 HOH HOH . L 6 HOH A 22 2022 2022 HOH HOH . L 6 HOH A 23 2023 2023 HOH HOH . L 6 HOH A 24 2024 2024 HOH HOH . L 6 HOH A 25 2025 2025 HOH HOH . L 6 HOH A 26 2026 2026 HOH HOH . L 6 HOH A 27 2027 2027 HOH HOH . L 6 HOH A 28 2028 2028 HOH HOH . L 6 HOH A 29 2029 2029 HOH HOH . L 6 HOH A 30 2030 2030 HOH HOH . L 6 HOH A 31 2031 2031 HOH HOH . L 6 HOH A 32 2032 2032 HOH HOH . L 6 HOH A 33 2033 2033 HOH HOH . L 6 HOH A 34 2034 2034 HOH HOH . L 6 HOH A 35 2035 2035 HOH HOH . L 6 HOH A 36 2036 2036 HOH HOH . L 6 HOH A 37 2037 2037 HOH HOH . L 6 HOH A 38 2038 2038 HOH HOH . L 6 HOH A 39 2039 2039 HOH HOH . L 6 HOH A 40 2040 2040 HOH HOH . L 6 HOH A 41 2041 2041 HOH HOH . L 6 HOH A 42 2042 2042 HOH HOH . L 6 HOH A 43 2043 2043 HOH HOH . L 6 HOH A 44 2044 2044 HOH HOH . L 6 HOH A 45 2045 2045 HOH HOH . L 6 HOH A 46 2046 2046 HOH HOH . L 6 HOH A 47 2047 2047 HOH HOH . L 6 HOH A 48 2048 2048 HOH HOH . L 6 HOH A 49 2049 2049 HOH HOH . L 6 HOH A 50 2050 2050 HOH HOH . L 6 HOH A 51 2051 2051 HOH HOH . L 6 HOH A 52 2052 2052 HOH HOH . L 6 HOH A 53 2053 2053 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C HAU . . . B 2 -4.602 52.258 14.664 1 103.62 ? C HAU 1516 A 1 HETATM 2 O O HAU . . . B 2 -5.031 53.217 15.289 1 107.08 ? O HAU 1516 A 1 HETATM 3 C C1 HAU . . . B 2 -3.127 52.003 14.574 1 103.63 ? C1 HAU 1516 A 1 HETATM 4 N N1 HAU . . . B 2 -5.456 51.369 14.068 1 97.34 ? N1 HAU 1516 A 1 HETATM 5 O O1 HAU . . . B 2 -7.102 50.442 9.566 1 84.45 ? O1 HAU 1516 A 1 HETATM 6 N N2 HAU . . . B 2 -11.113 49.19 9.829 1 65.94 ? N2 HAU 1516 A 1 HETATM 7 C C3 HAU . . . B 2 -5.06 50.128 13.377 1 92.85 ? C3 HAU 1516 A 1 HETATM 8 N N3 HAU . . . B 2 -8.987 49.626 10.58 1 78.45 ? N3 HAU 1516 A 1 HETATM 9 C C4 HAU . . . B 2 -5.59 50.087 11.941 1 89.36 ? C4 HAU 1516 A 1 HETATM 10 C C5 HAU . . . B 2 -7.121 50.229 11.968 1 88.17 ? C5 HAU 1516 A 1 HETATM 11 C C6 HAU . . . B 2 -7.505 51.551 12.657 1 90.36 ? C6 HAU 1516 A 1 HETATM 12 C C7 HAU . . . B 2 -6.916 51.578 14.075 1 93.39 ? C7 HAU 1516 A 1 HETATM 13 C C8 HAU . . . B 2 -7.725 50.123 10.578 1 84.54 ? C8 HAU 1516 A 1 HETATM 14 C C9 HAU . . . B 2 -9.832 49.399 9.48 1 71.17 ? C9 HAU 1516 A 1 HETATM 15 C C10 HAU . . . B 2 -9.404 49.353 8.138 1 71.28 ? C10 HAU 1516 A 1 HETATM 16 C C11 HAU . . . B 2 -10.355 49.099 7.165 1 69.04 ? C11 HAU 1516 A 1 HETATM 17 C C12 HAU . . . B 2 -11.686 48.898 7.5 1 65.93 ? C12 HAU 1516 A 1 HETATM 18 C C13 HAU . . . B 2 -11.995 48.944 8.85 1 64.93 ? C13 HAU 1516 A 1 HETATM 19 C C14 HAU . . . B 2 -12.749 48.686 6.45 1 60.69 ? C14 HAU 1516 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #