data_4BDT # _model_server_result.job_id 1ZG157vXAcjnd4uJkJaWnQ _model_server_result.datetime_utc '2024-11-30 03:18:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bdt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 4BDT # _exptl.entry_id 4BDT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.809 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HUPRINE W' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4BDT _cell.length_a 151.6 _cell.length_b 151.6 _cell.length_c 246.4 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BDT _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dodecameric 12 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 1,2 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 2 1,3,2,4,5,6 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 16_544 y+1/3,x-1/3,-z-1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 75.8 -43.76315 -82.133333 3 'crystal symmetry operation' 18_444 -x-2/3,-x+y-1/3,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 -75.8 -43.76315 -82.133333 4 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -75.8 -131.289451 0 5 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 75.8 -131.289451 0 6 'crystal symmetry operation' 17_434 x-y-2/3,-y-4/3,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 -175.052602 -82.133333 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 1 FUL NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 601 NAG 3 n C NAG 2 C 2 NAG A 602 NAG 3 n C FUL 3 C 3 FUL A 603 FUL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 69 A CYS 69 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 257 A CYS 257 1_555 A SG CYS 272 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 A SG CYS 409 A CYS 409 1_555 A SG CYS 529 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf4 B SG CYS 3 B CYS 3 1_555 B SG CYS 22 B CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 B SG CYS 17 B CYS 17 1_555 B SG CYS 39 B CYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 B SG CYS 41 B CYS 41 1_555 B SG CYS 52 B CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf7 B SG CYS 53 B CYS 53 1_555 B SG CYS 59 B CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 350 A ASN 350 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale2 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale3 C O6 NAG . C NAG 1 1_555 C C1 FUL . C FUL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C18 H19 Cl N2 O' _chem_comp.formula_weight 314.809 _chem_comp.id HUW _chem_comp.mon_nstd_flag . _chem_comp.name 'HUPRINE W' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C10 HUW sing 175 n n C10 C18 HUW sing 176 n n C18 C8 HUW sing 177 n n C8 C7 HUW doub 178 n n C8 C9 HUW sing 179 n n C7 C6 HUW sing 180 n n C6 C5 HUW sing 181 n n C6 C12 HUW sing 182 n n C5 C4 HUW sing 183 n n C4 N1 HUW sing 184 n y C4 C13 HUW doub 185 n y N1 C3 HUW doub 186 n y C3 C2 HUW sing 187 n y C3 C15 HUW sing 188 n y C2 C1 HUW doub 189 n y C1 CL1 HUW sing 190 n n C1 C17 HUW sing 191 n y C17 C16 HUW doub 192 n y C16 C15 HUW sing 193 n y C15 C14 HUW doub 194 n y C14 N2 HUW sing 195 n n C14 C13 HUW sing 196 n y C13 C11 HUW sing 197 n n C11 C12 HUW sing 198 n n C11 C9 HUW sing 199 n n O1 H1 HUW sing 200 n n C10 H101 HUW sing 201 n n C10 H102 HUW sing 202 n n C18 H181 HUW sing 203 n n C18 H182 HUW sing 204 n n C7 H7 HUW sing 205 n n C9 H91C HUW sing 206 n n C9 H92C HUW sing 207 n n C6 H6 HUW sing 208 n n C5 H51C HUW sing 209 n n C5 H52C HUW sing 210 n n C12 H121 HUW sing 211 n n C12 H122 HUW sing 212 n n C2 H2 HUW sing 213 n n C17 H17 HUW sing 214 n n C16 H16 HUW sing 215 n n N2 H21N HUW sing 216 n n N2 H22N HUW sing 217 n n C11 H11 HUW sing 218 n n # _atom_sites.entry_id 4BDT _atom_sites.fract_transf_matrix[1][1] 0.006596 _atom_sites.fract_transf_matrix[1][2] 0.003808 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007617 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004058 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HUW A 1 701 701 HUW HUW . E 5 CL A 1 802 802 CL CL . F 5 CL A 1 803 803 CL CL . G 5 CL A 1 804 804 CL CL . H 5 CL A 1 805 805 CL CL . I 5 CL A 1 806 806 CL CL . J 5 CL A 1 807 807 CL CL . K 5 CL A 1 808 808 CL CL . L 5 CL A 1 809 809 CL CL . M 5 CL A 1 810 810 CL CL . N 5 CL A 1 811 811 CL CL . O 6 SO4 A 1 812 812 SO4 SO4 . P 7 HOH A 1 2001 2001 HOH HOH . P 7 HOH A 2 2002 2002 HOH HOH . P 7 HOH A 3 2003 2003 HOH HOH . P 7 HOH A 4 2004 2004 HOH HOH . P 7 HOH A 5 2005 2005 HOH HOH . P 7 HOH A 6 2006 2006 HOH HOH . P 7 HOH A 7 2007 2007 HOH HOH . P 7 HOH A 8 2008 2008 HOH HOH . P 7 HOH A 9 2009 2009 HOH HOH . P 7 HOH A 10 2010 2010 HOH HOH . P 7 HOH A 11 2011 2011 HOH HOH . P 7 HOH A 12 2012 2012 HOH HOH . P 7 HOH A 13 2013 2013 HOH HOH . P 7 HOH A 14 2014 2014 HOH HOH . P 7 HOH A 15 2015 2015 HOH HOH . P 7 HOH A 16 2016 2016 HOH HOH . P 7 HOH A 17 2017 2017 HOH HOH . P 7 HOH A 18 2018 2018 HOH HOH . P 7 HOH A 19 2019 2019 HOH HOH . P 7 HOH A 20 2020 2020 HOH HOH . P 7 HOH A 21 2021 2021 HOH HOH . P 7 HOH A 22 2022 2022 HOH HOH . P 7 HOH A 23 2023 2023 HOH HOH . P 7 HOH A 24 2024 2024 HOH HOH . P 7 HOH A 25 2025 2025 HOH HOH . P 7 HOH A 26 2026 2026 HOH HOH . P 7 HOH A 27 2027 2027 HOH HOH . P 7 HOH A 28 2028 2028 HOH HOH . P 7 HOH A 29 2029 2029 HOH HOH . P 7 HOH A 30 2030 2030 HOH HOH . P 7 HOH A 31 2031 2031 HOH HOH . P 7 HOH A 32 2032 2032 HOH HOH . P 7 HOH A 33 2033 2033 HOH HOH . P 7 HOH A 34 2034 2034 HOH HOH . P 7 HOH A 35 2035 2035 HOH HOH . P 7 HOH A 36 2036 2036 HOH HOH . P 7 HOH A 37 2037 2037 HOH HOH . P 7 HOH A 38 2038 2038 HOH HOH . P 7 HOH A 39 2039 2039 HOH HOH . P 7 HOH A 40 2040 2040 HOH HOH . P 7 HOH A 41 2041 2041 HOH HOH . P 7 HOH A 42 2042 2042 HOH HOH . P 7 HOH A 43 2043 2043 HOH HOH . P 7 HOH A 44 2044 2044 HOH HOH . P 7 HOH A 45 2045 2045 HOH HOH . P 7 HOH A 46 2046 2046 HOH HOH . P 7 HOH A 47 2047 2047 HOH HOH . P 7 HOH A 48 2048 2048 HOH HOH . P 7 HOH A 49 2049 2049 HOH HOH . P 7 HOH A 50 2050 2050 HOH HOH . P 7 HOH A 51 2051 2051 HOH HOH . P 7 HOH A 52 2052 2052 HOH HOH . P 7 HOH A 53 2053 2053 HOH HOH . P 7 HOH A 54 2054 2054 HOH HOH . P 7 HOH A 55 2055 2055 HOH HOH . P 7 HOH A 56 2056 2056 HOH HOH . P 7 HOH A 57 2057 2057 HOH HOH . P 7 HOH A 58 2058 2058 HOH HOH . P 7 HOH A 59 2059 2059 HOH HOH . P 7 HOH A 60 2060 2060 HOH HOH . P 7 HOH A 61 2061 2061 HOH HOH . P 7 HOH A 62 2062 2062 HOH HOH . P 7 HOH A 63 2063 2063 HOH HOH . P 7 HOH A 64 2064 2064 HOH HOH . P 7 HOH A 65 2065 2065 HOH HOH . P 7 HOH A 66 2066 2066 HOH HOH . P 7 HOH A 67 2067 2067 HOH HOH . P 7 HOH A 68 2068 2068 HOH HOH . P 7 HOH A 69 2069 2069 HOH HOH . P 7 HOH A 70 2070 2070 HOH HOH . P 7 HOH A 71 2071 2071 HOH HOH . P 7 HOH A 72 2072 2072 HOH HOH . P 7 HOH A 73 2073 2073 HOH HOH . P 7 HOH A 74 2074 2074 HOH HOH . P 7 HOH A 75 2075 2075 HOH HOH . P 7 HOH A 76 2076 2076 HOH HOH . P 7 HOH A 77 2077 2077 HOH HOH . P 7 HOH A 78 2078 2078 HOH HOH . P 7 HOH A 79 2079 2079 HOH HOH . P 7 HOH A 80 2080 2080 HOH HOH . P 7 HOH A 81 2081 2081 HOH HOH . P 7 HOH A 82 2082 2082 HOH HOH . P 7 HOH A 83 2083 2083 HOH HOH . P 7 HOH A 84 2084 2084 HOH HOH . P 7 HOH A 85 2085 2085 HOH HOH . P 7 HOH A 86 2086 2086 HOH HOH . P 7 HOH A 87 2087 2087 HOH HOH . P 7 HOH A 88 2088 2088 HOH HOH . P 7 HOH A 89 2089 2089 HOH HOH . P 7 HOH A 90 2090 2090 HOH HOH . P 7 HOH A 91 2091 2091 HOH HOH . P 7 HOH A 92 2092 2092 HOH HOH . P 7 HOH A 93 2093 2093 HOH HOH . P 7 HOH A 94 2094 2094 HOH HOH . P 7 HOH A 95 2095 2095 HOH HOH . P 7 HOH A 96 2096 2096 HOH HOH . P 7 HOH A 97 2097 2097 HOH HOH . P 7 HOH A 98 2098 2098 HOH HOH . P 7 HOH A 99 2099 2099 HOH HOH . P 7 HOH A 100 2100 2100 HOH HOH . P 7 HOH A 101 2101 2101 HOH HOH . P 7 HOH A 102 2102 2102 HOH HOH . P 7 HOH A 103 2103 2103 HOH HOH . P 7 HOH A 104 2104 2104 HOH HOH . P 7 HOH A 105 2105 2105 HOH HOH . P 7 HOH A 106 2106 2106 HOH HOH . P 7 HOH A 107 2107 2107 HOH HOH . P 7 HOH A 108 2108 2108 HOH HOH . P 7 HOH A 109 2109 2109 HOH HOH . P 7 HOH A 110 2110 2110 HOH HOH . P 7 HOH A 111 2111 2111 HOH HOH . P 7 HOH A 112 2112 2112 HOH HOH . P 7 HOH A 113 2113 2113 HOH HOH . Q 7 HOH B 1 2001 2001 HOH HOH . Q 7 HOH B 2 2002 2002 HOH HOH . Q 7 HOH B 3 2003 2003 HOH HOH . Q 7 HOH B 4 2004 2004 HOH HOH . Q 7 HOH B 5 2005 2005 HOH HOH . Q 7 HOH B 6 2006 2006 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 HUW . . . D 4 -1.509 -40.007 -54.522 1 42.64 ? O1 HUW 701 A 1 HETATM 2 CL CL1 HUW . . . D 4 0.103 -32.137 -46.83 1 46.24 ? CL1 HUW 701 A 1 HETATM 3 C C1 HUW . . . D 4 -0.95 -32.767 -48.035 1 56.33 ? C1 HUW 701 A 1 HETATM 4 N N1 HUW . . . D 4 -0.718 -33.894 -51.449 1 42.59 ? N1 HUW 701 A 1 HETATM 5 C C3 HUW . . . D 4 -1.259 -33.594 -50.258 1 51.34 ? C3 HUW 701 A 1 HETATM 6 C C4 HUW . . . D 4 -1.489 -34.402 -52.489 1 40.88 ? C4 HUW 701 A 1 HETATM 7 N N2 HUW . . . D 4 -4.722 -34.497 -50.943 1 49.61 ? N2 HUW 701 A 1 HETATM 8 C C14 HUW . . . D 4 -3.385 -34.311 -51.149 1 48.58 ? C14 HUW 701 A 1 HETATM 9 C C2 HUW . . . D 4 -0.421 -33.093 -49.274 1 58.81 ? C2 HUW 701 A 1 HETATM 10 C C17 HUW . . . D 4 -2.307 -32.942 -47.784 1 54.81 ? C17 HUW 701 A 1 HETATM 11 C C15 HUW . . . D 4 -2.623 -33.783 -50.039 1 51.79 ? C15 HUW 701 A 1 HETATM 12 C C5 HUW . . . D 4 -0.705 -34.697 -53.759 1 34.41 ? C5 HUW 701 A 1 HETATM 13 C C13 HUW . . . D 4 -2.816 -34.61 -52.359 1 40.94 ? C13 HUW 701 A 1 HETATM 14 C C6 HUW . . . D 4 -1.465 -35.681 -54.658 1 33.51 ? C6 HUW 701 A 1 HETATM 15 C C7 HUW . . . D 4 -1.523 -37.038 -53.973 1 26.47 ? C7 HUW 701 A 1 HETATM 16 C C12 HUW . . . D 4 -2.875 -35.082 -54.845 1 38.8 ? C12 HUW 701 A 1 HETATM 17 C C8 HUW . . . D 4 -2.596 -37.488 -53.326 1 20.62 ? C8 HUW 701 A 1 HETATM 18 C C9 HUW . . . D 4 -3.879 -36.678 -53.208 1 28.47 ? C9 HUW 701 A 1 HETATM 19 C C18 HUW . . . D 4 -2.601 -38.849 -52.667 1 21.57 ? C18 HUW 701 A 1 HETATM 20 C C11 HUW . . . D 4 -3.64 -35.181 -53.509 1 33.08 ? C11 HUW 701 A 1 HETATM 21 C C10 HUW . . . D 4 -1.378 -39.661 -53.138 1 33.72 ? C10 HUW 701 A 1 HETATM 22 C C16 HUW . . . D 4 -3.149 -33.447 -48.779 1 55.39 ? C16 HUW 701 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 22 #