data_4BEB
#
_model_server_result.job_id            m0cHx7jZ7rTx0hz6IRU5qA 
_model_server_result.datetime_utc      '2025-03-06 08:14:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4beb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1886}' 
#
_entry.id    4BEB 
#
_exptl.entry_id    4BEB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.48 
_cell.angle_gamma         90 
_cell.entry_id            4BEB 
_cell.length_a            127.112 
_cell.length_b            123.112 
_cell.length_c            160.11 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4BEB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F 1 1 
B,G,H 2 1 
C,I,J 3 1 
D,K,L 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 314 A THR 314 1_555 E MG MG . A MG 1885 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
metalc ? metalc2 E MG MG . A MG 1885 1_555 F O1B ATP . A ATP 1886 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
metalc ? metalc3 G MG MG . B MG 1885 1_555 H O1B ATP . B ATP 1886 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? 
metalc ? metalc4 C OG1 THR 314 C THR 314 1_555 I MG MG . C MG 1885 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc5 C OD1 ASP 408 C ASP 408 1_555 I MG MG . C MG 1885 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? 
metalc ? metalc6 I MG MG . C MG 1885 1_555 J O1B ATP . C ATP 1886 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? 
metalc ? metalc7 K MG MG . D MG 1885 1_555 L O3G ATP . D ATP 1886 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     4BEB 
_atom_sites.fract_transf_matrix[1][1]    0.007867 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003096 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008123 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006712 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MG A 1 1885 1885 MG MG . 
F 3 ATP A 1 1886 1886 ATP ATP . 
G 2 MG B 1 1885 1885 MG MG . 
H 3 ATP B 1 1886 1886 ATP ATP . 
I 2 MG C 1 1885 1885 MG MG . 
J 3 ATP C 1 1886 1886 ATP ATP . 
K 2 MG D 1 1885 1885 MG MG . 
L 3 ATP D 1 1886 1886 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . F 3 -12.03 -10.614 137.312 1 34.08 ? PG ATP 1886 A 1 
HETATM 2 O O1G ATP . . . F 3 -12.264 -11.116 138.719 1 27.51 ? O1G ATP 1886 A 1 
HETATM 3 O O2G ATP . . . F 3 -10.708 -11.05 136.73 1 31.95 ? O2G ATP 1886 A 1 
HETATM 4 O O3G ATP . . . F 3 -13.201 -10.771 136.367 1 39.91 ? O3G ATP 1886 A 1 
HETATM 5 P PB ATP . . . F 3 -10.893 -8.008 136.795 1 44.48 ? PB ATP 1886 A 1 
HETATM 6 O O1B ATP . . . F 3 -11.615 -7.331 135.65 1 41.15 ? O1B ATP 1886 A 1 
HETATM 7 O O2B ATP . . . F 3 -9.555 -8.666 136.553 1 29.31 ? O2B ATP 1886 A 1 
HETATM 8 O O3B ATP . . . F 3 -11.928 -9.015 137.525 1 51.72 ? O3B ATP 1886 A 1 
HETATM 9 P PA ATP . . . F 3 -11.386 -5.495 138.038 1 39.39 ? PA ATP 1886 A 1 
HETATM 10 O O1A ATP . . . F 3 -11.186 -4.758 136.734 1 35.19 ? O1A ATP 1886 A 1 
HETATM 11 O O2A ATP . . . F 3 -12.782 -5.682 138.588 1 41.73 ? O2A ATP 1886 A 1 
HETATM 12 O O3A ATP . . . F 3 -10.68 -6.944 137.986 1 43.06 ? O3A ATP 1886 A 1 
HETATM 13 O O5' ATP . . . F 3 -10.489 -4.799 139.181 1 31.91 ? O5' ATP 1886 A 1 
HETATM 14 C C5' ATP . . . F 3 -10.341 -5.473 140.432 1 33.2 ? C5' ATP 1886 A 1 
HETATM 15 C C4' ATP . . . F 3 -10.167 -4.457 141.548 1 29.58 ? C4' ATP 1886 A 1 
HETATM 16 O O4' ATP . . . F 3 -8.892 -3.822 141.445 1 40.54 ? O4' ATP 1886 A 1 
HETATM 17 C C3' ATP . . . F 3 -11.224 -3.377 141.434 1 35.62 ? C3' ATP 1886 A 1 
HETATM 18 O O3' ATP . . . F 3 -11.811 -3.191 142.727 1 33.09 ? O3' ATP 1886 A 1 
HETATM 19 C C2' ATP . . . F 3 -10.472 -2.138 140.985 1 32.88 ? C2' ATP 1886 A 1 
HETATM 20 O O2' ATP . . . F 3 -11.002 -0.953 141.582 1 43.65 ? O2' ATP 1886 A 1 
HETATM 21 C C1' ATP . . . F 3 -9.044 -2.402 141.429 1 39.31 ? C1' ATP 1886 A 1 
HETATM 22 N N9 ATP . . . F 3 -8.076 -1.815 140.476 1 34.22 ? N9 ATP 1886 A 1 
HETATM 23 C C8 ATP . . . F 3 -7.792 -2.292 139.251 1 35.68 ? C8 ATP 1886 A 1 
HETATM 24 N N7 ATP . . . F 3 -6.861 -1.522 138.634 1 37.25 ? N7 ATP 1886 A 1 
HETATM 25 C C5 ATP . . . F 3 -6.539 -0.526 139.477 1 31.57 ? C5 ATP 1886 A 1 
HETATM 26 C C6 ATP . . . F 3 -5.621 0.632 139.452 1 32.67 ? C6 ATP 1886 A 1 
HETATM 27 N N6 ATP . . . F 3 -4.843 0.886 138.37 1 32.44 ? N6 ATP 1886 A 1 
HETATM 28 N N1 ATP . . . F 3 -5.591 1.424 140.546 1 38.91 ? N1 ATP 1886 A 1 
HETATM 29 C C2 ATP . . . F 3 -6.358 1.182 141.625 1 32.18 ? C2 ATP 1886 A 1 
HETATM 30 N N3 ATP . . . F 3 -7.211 0.149 141.715 1 27.74 ? N3 ATP 1886 A 1 
HETATM 31 C C4 ATP . . . F 3 -7.342 -0.724 140.691 1 30.09 ? C4 ATP 1886 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#