data_4BER
#
_model_server_result.job_id            xmri01CDX1-ru7CAzhATrg 
_model_server_result.datetime_utc      '2024-11-29 12:45:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ber 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":3000}' 
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_entry.id    4BER 
#
_exptl.entry_id    4BER 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4BER 
_cell.length_a            58.33 
_cell.length_b            103.56 
_cell.length_c            224.1 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 4BER 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        17 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,J 1 1 
B,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 165 n n 
C1 C2 GOL sing 166 n n 
C1 H11 GOL sing 167 n n 
C1 H12 GOL sing 168 n n 
O1 HO1 GOL sing 169 n n 
C2 O2 GOL sing 170 n n 
C2 C3 GOL sing 171 n n 
C2 H2 GOL sing 172 n n 
O2 HO2 GOL sing 173 n n 
C3 O3 GOL sing 174 n n 
C3 H31 GOL sing 175 n n 
C3 H32 GOL sing 176 n n 
O3 HO3 GOL sing 177 n n 
#
_atom_sites.entry_id                     4BER 
_atom_sites.fract_transf_matrix[1][1]    0.017144 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009656 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004462 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 C5P A 1 1000 1000 C5P C5P . 
D 3 PO4 A 1 2000 2000 PO4 PO4 . 
E 3 PO4 A 1 2001 2001 PO4 PO4 . 
F 4 GOL A 1 3000 3000 GOL GOL . 
G 2 C5P B 1 1000 1000 C5P C5P . 
H 3 PO4 B 1 2000 2000 PO4 PO4 . 
I 3 PO4 B 1 2001 2001 PO4 PO4 . 
J 5 HOH A 1 3001 3001 HOH HOH . 
J 5 HOH A 2 3002 3002 HOH HOH . 
J 5 HOH A 3 3003 3003 HOH HOH . 
J 5 HOH A 4 3004 3004 HOH HOH . 
J 5 HOH A 5 3005 3005 HOH HOH . 
J 5 HOH A 6 3006 3006 HOH HOH . 
J 5 HOH A 7 3007 3007 HOH HOH . 
J 5 HOH A 8 3008 3008 HOH HOH . 
J 5 HOH A 9 3009 3009 HOH HOH . 
J 5 HOH A 10 3010 3010 HOH HOH . 
J 5 HOH A 11 3011 3011 HOH HOH . 
J 5 HOH A 12 3012 3012 HOH HOH . 
J 5 HOH A 13 3013 3013 HOH HOH . 
J 5 HOH A 14 3014 3014 HOH HOH . 
J 5 HOH A 15 3015 3015 HOH HOH . 
J 5 HOH A 16 3016 3016 HOH HOH . 
J 5 HOH A 17 3017 3017 HOH HOH . 
J 5 HOH A 18 3018 3018 HOH HOH . 
J 5 HOH A 19 3019 3019 HOH HOH . 
J 5 HOH A 20 3020 3020 HOH HOH . 
J 5 HOH A 21 3021 3021 HOH HOH . 
J 5 HOH A 22 3022 3022 HOH HOH . 
J 5 HOH A 23 3023 3023 HOH HOH . 
J 5 HOH A 24 3024 3024 HOH HOH . 
J 5 HOH A 25 3025 3025 HOH HOH . 
J 5 HOH A 26 3026 3026 HOH HOH . 
J 5 HOH A 27 3027 3027 HOH HOH . 
J 5 HOH A 28 3028 3028 HOH HOH . 
J 5 HOH A 29 3029 3029 HOH HOH . 
J 5 HOH A 30 3030 3030 HOH HOH . 
J 5 HOH A 31 3031 3031 HOH HOH . 
J 5 HOH A 32 3032 3032 HOH HOH . 
J 5 HOH A 33 3033 3033 HOH HOH . 
J 5 HOH A 34 3034 3034 HOH HOH . 
J 5 HOH A 35 3035 3035 HOH HOH . 
J 5 HOH A 36 3036 3036 HOH HOH . 
K 5 HOH B 1 3001 3001 HOH HOH . 
K 5 HOH B 2 3002 3002 HOH HOH . 
K 5 HOH B 3 3003 3003 HOH HOH . 
K 5 HOH B 4 3004 3004 HOH HOH . 
K 5 HOH B 5 3005 3005 HOH HOH . 
K 5 HOH B 6 3006 3006 HOH HOH . 
K 5 HOH B 7 3007 3007 HOH HOH . 
K 5 HOH B 8 3008 3008 HOH HOH . 
K 5 HOH B 9 3009 3009 HOH HOH . 
K 5 HOH B 10 3010 3010 HOH HOH . 
K 5 HOH B 11 3011 3011 HOH HOH . 
K 5 HOH B 12 3012 3012 HOH HOH . 
K 5 HOH B 13 3013 3013 HOH HOH . 
K 5 HOH B 14 3014 3014 HOH HOH . 
K 5 HOH B 15 3015 3015 HOH HOH . 
K 5 HOH B 16 3016 3016 HOH HOH . 
K 5 HOH B 17 3017 3017 HOH HOH . 
K 5 HOH B 18 3018 3018 HOH HOH . 
K 5 HOH B 19 3019 3019 HOH HOH . 
K 5 HOH B 20 3020 3020 HOH HOH . 
K 5 HOH B 21 3021 3021 HOH HOH . 
K 5 HOH B 22 3022 3022 HOH HOH . 
K 5 HOH B 23 3023 3023 HOH HOH . 
K 5 HOH B 24 3024 3024 HOH HOH . 
K 5 HOH B 25 3025 3025 HOH HOH . 
K 5 HOH B 26 3026 3026 HOH HOH . 
K 5 HOH B 27 3027 3027 HOH HOH . 
K 5 HOH B 28 3028 3028 HOH HOH . 
K 5 HOH B 29 3029 3029 HOH HOH . 
K 5 HOH B 30 3030 3030 HOH HOH . 
K 5 HOH B 31 3031 3031 HOH HOH . 
K 5 HOH B 32 3032 3032 HOH HOH . 
K 5 HOH B 33 3033 3033 HOH HOH . 
K 5 HOH B 34 3034 3034 HOH HOH . 
K 5 HOH B 35 3035 3035 HOH HOH . 
K 5 HOH B 36 3036 3036 HOH HOH . 
K 5 HOH B 37 3037 3037 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 4 15.289 45.6 27.974 1 48.68 ? C1 GOL 3000 A 1 
HETATM 2 O O1 GOL . . . F 4 16.171 44.951 27.055 1 49.76 ? O1 GOL 3000 A 1 
HETATM 3 C C2 GOL . . . F 4 13.97 45.997 27.342 1 47.32 ? C2 GOL 3000 A 1 
HETATM 4 O O2 GOL . . . F 4 12.924 45.798 28.293 1 37.53 ? O2 GOL 3000 A 1 
HETATM 5 C C3 GOL . . . F 4 13.649 45.265 26.052 1 55.02 ? C3 GOL 3000 A 1 
HETATM 6 O O3 GOL . . . F 4 12.339 45.568 25.57 1 55.59 ? O3 GOL 3000 A 1 
HETATM 7 H H11 GOL . . . F 4 15.778 46.47 28.406 1 48.66 ? H11 GOL 3000 A 1 
HETATM 8 H H12 GOL . . . F 4 15.117 44.947 28.827 1 48.61 ? H12 GOL 3000 A 1 
HETATM 9 H HO1 GOL . . . F 4 17.08 45.293 27.26 1 49.91 ? HO1 GOL 3000 A 1 
HETATM 10 H H2 GOL . . . F 4 13.916 47.075 27.2 1 46.93 ? H2 GOL 3000 A 1 
HETATM 11 H HO2 GOL . . . F 4 12.778 44.823 28.407 1 36.64 ? HO2 GOL 3000 A 1 
HETATM 12 H H31 GOL . . . F 4 13.759 44.188 26.166 1 55.34 ? H31 GOL 3000 A 1 
HETATM 13 H H32 GOL . . . F 4 14.37 45.531 25.281 1 55.19 ? H32 GOL 3000 A 1 
HETATM 14 H HO3 GOL . . . F 4 12.307 45.234 24.636 1 55.73 ? HO3 GOL 3000 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#