data_4BES # _model_server_result.job_id m2VD32uDQH80v9oIkLEHlQ _model_server_result.datetime_utc '2024-11-08 01:08:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bes # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2000}' # _entry.id 4BES # _exptl.entry_id 4BES _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 184.151 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BES _cell.length_a 84.275 _cell.length_b 122.304 _cell.length_c 54.985 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BES _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H15 N O4 P 1' _chem_comp.formula_weight 184.151 _chem_comp.id PC _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 PC doub 273 n n P1 O3 PC sing 274 n n P1 O4 PC sing 275 n n P1 O2 PC sing 276 n n O3 HO3 PC sing 277 n n O4 HO4 PC sing 278 n n O2 C1 PC sing 279 n n C1 C2 PC sing 280 n n C1 H11 PC sing 281 n n C1 H12 PC sing 282 n n C2 N1 PC sing 283 n n C2 H21 PC sing 284 n n C2 H22 PC sing 285 n n N1 C3 PC sing 286 n n N1 C4 PC sing 287 n n N1 C5 PC sing 288 n n C3 H31 PC sing 289 n n C3 H32 PC sing 290 n n C3 H33 PC sing 291 n n C4 H41 PC sing 292 n n C4 H42 PC sing 293 n n C4 H43 PC sing 294 n n C5 H51 PC sing 295 n n C5 H52 PC sing 296 n n C5 H53 PC sing 297 n n # _atom_sites.entry_id 4BES _atom_sites.fract_transf_matrix[1][1] 0.011866 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008176 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018187 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 C5P A 1 1000 1000 C5P C5P . C 3 PC A 1 2000 2000 PC PC . D 4 SO4 A 1 3000 3000 SO4 SO4 . E 4 SO4 A 1 3001 3001 SO4 SO4 . F 4 SO4 A 1 3002 3002 SO4 SO4 . G 5 HOH A 1 2001 2001 HOH HOH . G 5 HOH A 2 2002 2002 HOH HOH . G 5 HOH A 3 2003 2003 HOH HOH . G 5 HOH A 4 2004 2004 HOH HOH . G 5 HOH A 5 2005 2005 HOH HOH . G 5 HOH A 6 2006 2006 HOH HOH . G 5 HOH A 7 2007 2007 HOH HOH . G 5 HOH A 8 2008 2008 HOH HOH . G 5 HOH A 9 2009 2009 HOH HOH . G 5 HOH A 10 2010 2010 HOH HOH . G 5 HOH A 11 2011 2011 HOH HOH . G 5 HOH A 12 2012 2012 HOH HOH . G 5 HOH A 13 2013 2013 HOH HOH . G 5 HOH A 14 2014 2014 HOH HOH . G 5 HOH A 15 2015 2015 HOH HOH . G 5 HOH A 16 2016 2016 HOH HOH . G 5 HOH A 17 2017 2017 HOH HOH . G 5 HOH A 18 2018 2018 HOH HOH . G 5 HOH A 19 2019 2019 HOH HOH . G 5 HOH A 20 2020 2020 HOH HOH . G 5 HOH A 21 2021 2021 HOH HOH . G 5 HOH A 22 2022 2022 HOH HOH . G 5 HOH A 23 2023 2023 HOH HOH . G 5 HOH A 24 2024 2024 HOH HOH . G 5 HOH A 25 2025 2025 HOH HOH . G 5 HOH A 26 2026 2026 HOH HOH . G 5 HOH A 27 2027 2027 HOH HOH . G 5 HOH A 28 2028 2028 HOH HOH . G 5 HOH A 29 2029 2029 HOH HOH . G 5 HOH A 30 2030 2030 HOH HOH . G 5 HOH A 31 2031 2031 HOH HOH . G 5 HOH A 32 2032 2032 HOH HOH . G 5 HOH A 33 2033 2033 HOH HOH . G 5 HOH A 34 2034 2034 HOH HOH . G 5 HOH A 35 2035 2035 HOH HOH . G 5 HOH A 36 2036 2036 HOH HOH . G 5 HOH A 37 2037 2037 HOH HOH . G 5 HOH A 38 2038 2038 HOH HOH . G 5 HOH A 39 2039 2039 HOH HOH . G 5 HOH A 40 2040 2040 HOH HOH . G 5 HOH A 41 2041 2041 HOH HOH . G 5 HOH A 42 2042 2042 HOH HOH . G 5 HOH A 43 2043 2043 HOH HOH . G 5 HOH A 44 2044 2044 HOH HOH . G 5 HOH A 45 2045 2045 HOH HOH . G 5 HOH A 46 2046 2046 HOH HOH . G 5 HOH A 47 2047 2047 HOH HOH . G 5 HOH A 48 2048 2048 HOH HOH . G 5 HOH A 49 2049 2049 HOH HOH . G 5 HOH A 50 2050 2050 HOH HOH . G 5 HOH A 51 2051 2051 HOH HOH . G 5 HOH A 52 2052 2052 HOH HOH . G 5 HOH A 53 2053 2053 HOH HOH . G 5 HOH A 54 2054 2054 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 PC . . . C 3 -8.621 32.917 2.036 1 104.57 ? P1 PC 2000 A 1 HETATM 2 O O1 PC . . . C 3 -7.625 31.916 2.48 1 105.2 ? O1 PC 2000 A 1 HETATM 3 O O3 PC . . . C 3 -8.134 33.793 0.867 1 104.47 ? O3 PC 2000 A 1 HETATM 4 O O4 PC . . . C 3 -9.099 33.82 3.163 1 104.82 ? O4 PC 2000 A 1 HETATM 5 O O2 PC . . . C 3 -9.939 32.122 1.503 1 103.25 ? O2 PC 2000 A 1 HETATM 6 C C1 PC . . . C 3 -9.883 31.306 0.305 1 101.69 ? C1 PC 2000 A 1 HETATM 7 C C2 PC . . . C 3 -11.192 30.562 0.204 1 99.29 ? C2 PC 2000 A 1 HETATM 8 N N1 PC . . . C 3 -11.507 29.93 -1.136 1 98.46 ? N1 PC 2000 A 1 HETATM 9 C C3 PC . . . C 3 -10.425 28.983 -1.555 1 98.13 ? C3 PC 2000 A 1 HETATM 10 C C4 PC . . . C 3 -11.676 30.973 -2.193 1 97.32 ? C4 PC 2000 A 1 HETATM 11 C C5 PC . . . C 3 -12.791 29.177 -1.002 1 99.34 ? C5 PC 2000 A 1 HETATM 12 H HO3 PC . . . C 3 -8.644 34.021 0.046 1 104.36 ? HO3 PC 2000 A 1 HETATM 13 H HO4 PC . . . C 3 -8.721 34.727 3.306 1 104.85 ? HO4 PC 2000 A 1 HETATM 14 H H11 PC . . . C 3 -9.059 30.598 0.392 1 101.77 ? H11 PC 2000 A 1 HETATM 15 H H12 PC . . . C 3 -9.655 31.963 -0.532 1 101.8 ? H12 PC 2000 A 1 HETATM 16 H H21 PC . . . C 3 -12.019 31.212 0.487 1 99.07 ? H21 PC 2000 A 1 HETATM 17 H H22 PC . . . C 3 -11.193 29.772 0.953 1 99.16 ? H22 PC 2000 A 1 HETATM 18 H H31 PC . . . C 3 -9.516 29.495 -1.868 1 98.08 ? H31 PC 2000 A 1 HETATM 19 H H32 PC . . . C 3 -10.148 28.3 -0.753 1 98.01 ? H32 PC 2000 A 1 HETATM 20 H H33 PC . . . C 3 -10.732 28.364 -2.397 1 98.05 ? H33 PC 2000 A 1 HETATM 21 H H41 PC . . . C 3 -12.064 30.549 -3.118 1 97.14 ? H41 PC 2000 A 1 HETATM 22 H H42 PC . . . C 3 -12.363 31.753 -1.87 1 97.22 ? H42 PC 2000 A 1 HETATM 23 H H43 PC . . . C 3 -10.738 31.458 -2.456 1 97.32 ? H43 PC 2000 A 1 HETATM 24 H H51 PC . . . C 3 -12.798 28.481 -0.165 1 99.32 ? H51 PC 2000 A 1 HETATM 25 H H52 PC . . . C 3 -13.619 29.864 -0.837 1 99.4 ? H52 PC 2000 A 1 HETATM 26 H H53 PC . . . C 3 -13.029 28.612 -1.902 1 99.37 ? H53 PC 2000 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #