data_4BET # _model_server_result.job_id TbBTzpQ-dczS0-HlHZGLdA _model_server_result.datetime_utc '2024-12-01 17:41:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bet # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1000}' # _entry.id 4BET # _exptl.entry_id 4BET _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 488.324 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "[2-CYTIDYLATE-O'-PHOSPHONYLOXYL]-ETHYL-TRIMETHYL-AMMONIUM" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.32 _cell.angle_gamma 90 _cell.entry_id 4BET _cell.length_a 66.1 _cell.length_b 122.15 _cell.length_c 75.7 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BET _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,L 1 1 B,G,H,I,J,K,M 1 2 B,G,H,I,J,K,M 2 1 A,C,D,E,F,L 2 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y+1/2,-z+1 -1 0 0 0 1 0 0 0 -1 43.563495 61.075 72.26753 3 'crystal symmetry operation' 2_646 -x+1,y-1/2,-z+1 -1 0 0 0 1 0 0 0 -1 43.563495 -61.075 72.26753 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'C14 H26 N4 O11 P2' _chem_comp.formula_weight 488.324 _chem_comp.id CDC _chem_comp.mon_nstd_flag . _chem_comp.name "[2-CYTIDYLATE-O'-PHOSPHONYLOXYL]-ETHYL-TRIMETHYL-AMMONIUM" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CDC sing 70 n n N1 C6 CDC sing 71 n n N1 C1' CDC sing 72 n n C2 N3 CDC sing 73 n n C2 O2 CDC doub 74 n n N3 C4 CDC doub 75 n n C4 C5 CDC sing 76 n n C4 N4 CDC sing 77 n n C5 C6 CDC doub 78 n n C5 H5 CDC sing 79 n n C6 H6 CDC sing 80 n n N4 H41 CDC sing 81 n n N4 H42 CDC sing 82 n n C1' C2' CDC sing 83 n n C1' O4' CDC sing 84 n n C1' H1' CDC sing 85 n n C2' O2' CDC sing 86 n n C2' C3' CDC sing 87 n n C2' H2' CDC sing 88 n n O2' "HO'2" CDC sing 89 n n C3' C4' CDC sing 90 n n C3' O3' CDC sing 91 n n C3' H3' CDC sing 92 n n C4' O4' CDC sing 93 n n C4' C5' CDC sing 94 n n C4' H4' CDC sing 95 n n O3' H3T CDC sing 96 n n C5' O5' CDC sing 97 n n C5' "H5'1" CDC sing 98 n n C5' "H5'2" CDC sing 99 n n O5' PA CDC sing 100 n n PA O1A CDC doub 101 n n PA O2A CDC sing 102 n n PA O3A CDC sing 103 n n O2A HO2A CDC sing 104 n n O3A PB CDC sing 105 n n PB O1B CDC sing 106 n n PB O2B CDC sing 107 n n PB O3B CDC doub 108 n n O1B C14 CDC sing 109 n n C14 C15 CDC sing 110 n n C14 H141 CDC sing 111 n n C14 H142 CDC sing 112 n n C15 N11 CDC sing 113 n n C15 H151 CDC sing 114 n n C15 H152 CDC sing 115 n n N11 C16 CDC sing 116 n n N11 C17 CDC sing 117 n n N11 C18 CDC sing 118 n n C16 H161 CDC sing 119 n n C16 H162 CDC sing 120 n n C16 H163 CDC sing 121 n n C17 H171 CDC sing 122 n n C17 H172 CDC sing 123 n n C17 H173 CDC sing 124 n n C18 H181 CDC sing 125 n n C18 H182 CDC sing 126 n n C18 H183 CDC sing 127 n n # _atom_sites.entry_id 4BET _atom_sites.fract_transf_matrix[1][1] 0.015129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004718 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008187 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013837 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CDC A 1 1000 1000 CDC CDC . D 3 SO4 A 1 2000 2000 SO4 SO4 . E 3 SO4 A 1 2001 2001 SO4 SO4 . F 4 GOL A 1 3000 3000 GOL GOL . G 2 CDC B 1 1000 1000 CDC CDC . H 3 SO4 B 1 2000 2000 SO4 SO4 . I 3 SO4 B 1 2001 2001 SO4 SO4 . J 4 GOL B 1 3000 3000 GOL GOL . K 4 GOL B 1 3001 3001 GOL GOL . L 5 HOH A 1 2051 2051 HOH HOH . L 5 HOH A 2 2052 2052 HOH HOH . L 5 HOH A 3 2053 2053 HOH HOH . L 5 HOH A 4 2054 2054 HOH HOH . L 5 HOH A 5 2055 2055 HOH HOH . L 5 HOH A 6 2056 2056 HOH HOH . L 5 HOH A 7 2057 2057 HOH HOH . L 5 HOH A 8 2058 2058 HOH HOH . L 5 HOH A 9 2059 2059 HOH HOH . L 5 HOH A 10 2060 2060 HOH HOH . L 5 HOH A 11 2061 2061 HOH HOH . L 5 HOH A 12 2062 2062 HOH HOH . L 5 HOH A 13 2063 2063 HOH HOH . L 5 HOH A 14 2064 2064 HOH HOH . L 5 HOH A 15 2065 2065 HOH HOH . L 5 HOH A 16 2066 2066 HOH HOH . L 5 HOH A 17 2067 2067 HOH HOH . L 5 HOH A 18 2068 2068 HOH HOH . L 5 HOH A 19 2069 2069 HOH HOH . L 5 HOH A 20 2070 2070 HOH HOH . L 5 HOH A 21 2071 2071 HOH HOH . L 5 HOH A 22 2072 2072 HOH HOH . L 5 HOH A 23 2073 2073 HOH HOH . L 5 HOH A 24 2074 2074 HOH HOH . L 5 HOH A 25 2075 2075 HOH HOH . L 5 HOH A 26 2076 2076 HOH HOH . L 5 HOH A 27 2077 2077 HOH HOH . L 5 HOH A 28 2078 2078 HOH HOH . L 5 HOH A 29 2079 2079 HOH HOH . L 5 HOH A 30 2080 2080 HOH HOH . L 5 HOH A 31 2081 2081 HOH HOH . L 5 HOH A 32 2082 2082 HOH HOH . L 5 HOH A 33 2083 2083 HOH HOH . L 5 HOH A 34 2084 2084 HOH HOH . L 5 HOH A 35 2085 2085 HOH HOH . L 5 HOH A 36 2086 2086 HOH HOH . L 5 HOH A 37 2087 2087 HOH HOH . L 5 HOH A 38 2088 2088 HOH HOH . L 5 HOH A 39 2089 2089 HOH HOH . L 5 HOH A 40 2090 2090 HOH HOH . L 5 HOH A 41 2091 2091 HOH HOH . L 5 HOH A 42 2092 2092 HOH HOH . L 5 HOH A 43 2093 2093 HOH HOH . L 5 HOH A 44 2094 2094 HOH HOH . L 5 HOH A 45 2095 2095 HOH HOH . L 5 HOH A 46 2096 2096 HOH HOH . L 5 HOH A 47 2097 2097 HOH HOH . L 5 HOH A 48 2098 2098 HOH HOH . L 5 HOH A 49 2099 2099 HOH HOH . L 5 HOH A 50 2100 2100 HOH HOH . L 5 HOH A 51 2101 2101 HOH HOH . L 5 HOH A 52 2102 2102 HOH HOH . L 5 HOH A 53 2103 2103 HOH HOH . M 5 HOH B 1 2051 2051 HOH HOH . M 5 HOH B 2 2052 2052 HOH HOH . M 5 HOH B 3 2053 2053 HOH HOH . M 5 HOH B 4 2054 2054 HOH HOH . M 5 HOH B 5 2055 2055 HOH HOH . M 5 HOH B 6 2056 2056 HOH HOH . M 5 HOH B 7 2057 2057 HOH HOH . M 5 HOH B 8 2058 2058 HOH HOH . M 5 HOH B 9 2059 2059 HOH HOH . M 5 HOH B 10 2060 2060 HOH HOH . M 5 HOH B 11 2061 2061 HOH HOH . M 5 HOH B 12 2062 2062 HOH HOH . M 5 HOH B 13 2063 2063 HOH HOH . M 5 HOH B 14 2064 2064 HOH HOH . M 5 HOH B 15 2065 2065 HOH HOH . M 5 HOH B 16 2066 2066 HOH HOH . M 5 HOH B 17 2067 2067 HOH HOH . M 5 HOH B 18 2068 2068 HOH HOH . M 5 HOH B 19 2069 2069 HOH HOH . M 5 HOH B 20 2070 2070 HOH HOH . M 5 HOH B 21 2071 2071 HOH HOH . M 5 HOH B 22 2072 2072 HOH HOH . M 5 HOH B 23 2073 2073 HOH HOH . M 5 HOH B 24 2074 2074 HOH HOH . M 5 HOH B 25 2075 2075 HOH HOH . M 5 HOH B 26 2076 2076 HOH HOH . M 5 HOH B 27 2077 2077 HOH HOH . M 5 HOH B 28 2078 2078 HOH HOH . M 5 HOH B 29 2079 2079 HOH HOH . M 5 HOH B 30 2080 2080 HOH HOH . M 5 HOH B 31 2081 2081 HOH HOH . M 5 HOH B 32 2082 2082 HOH HOH . M 5 HOH B 33 2083 2083 HOH HOH . M 5 HOH B 34 2084 2084 HOH HOH . M 5 HOH B 35 2085 2085 HOH HOH . M 5 HOH B 36 2086 2086 HOH HOH . M 5 HOH B 37 2087 2087 HOH HOH . M 5 HOH B 38 2088 2088 HOH HOH . M 5 HOH B 39 2089 2089 HOH HOH . M 5 HOH B 40 2090 2090 HOH HOH . M 5 HOH B 41 2091 2091 HOH HOH . M 5 HOH B 42 2092 2092 HOH HOH . M 5 HOH B 43 2093 2093 HOH HOH . M 5 HOH B 44 2094 2094 HOH HOH . M 5 HOH B 45 2095 2095 HOH HOH . M 5 HOH B 46 2096 2096 HOH HOH . M 5 HOH B 47 2097 2097 HOH HOH . M 5 HOH B 48 2098 2098 HOH HOH . M 5 HOH B 49 2099 2099 HOH HOH . M 5 HOH B 50 2100 2100 HOH HOH . M 5 HOH B 51 2101 2101 HOH HOH . M 5 HOH B 52 2102 2102 HOH HOH . M 5 HOH B 53 2103 2103 HOH HOH . M 5 HOH B 54 2104 2104 HOH HOH . M 5 HOH B 55 2105 2105 HOH HOH . M 5 HOH B 56 2106 2106 HOH HOH . M 5 HOH B 57 2107 2107 HOH HOH . M 5 HOH B 58 2108 2108 HOH HOH . M 5 HOH B 59 2109 2109 HOH HOH . M 5 HOH B 60 2110 2110 HOH HOH . M 5 HOH B 61 2111 2111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CDC . . . C 2 11.799 -24.52 25.077 1 57.59 ? N1 CDC 1000 A 1 HETATM 2 C C2 CDC . . . C 2 11.384 -23.687 24.027 1 56.6 ? C2 CDC 1000 A 1 HETATM 3 N N3 CDC . . . C 2 10.049 -23.465 23.855 1 55.4 ? N3 CDC 1000 A 1 HETATM 4 C C4 CDC . . . C 2 9.148 -24.003 24.695 1 55.86 ? C4 CDC 1000 A 1 HETATM 5 C C5 CDC . . . C 2 9.549 -24.832 25.787 1 56.41 ? C5 CDC 1000 A 1 HETATM 6 C C6 CDC . . . C 2 10.864 -25.067 25.941 1 57.3 ? C6 CDC 1000 A 1 HETATM 7 O O2 CDC . . . C 2 12.237 -23.13 23.327 1 56.53 ? O2 CDC 1000 A 1 HETATM 8 N N4 CDC . . . C 2 7.859 -23.717 24.505 1 56.45 ? N4 CDC 1000 A 1 HETATM 9 C C1' CDC . . . C 2 13.252 -24.805 25.215 1 56.71 ? C1' CDC 1000 A 1 HETATM 10 C C2' CDC . . . C 2 14.016 -23.747 26.012 1 56.4 ? C2' CDC 1000 A 1 HETATM 11 O O2' CDC . . . C 2 15.357 -23.681 25.543 1 56.4 ? O2' CDC 1000 A 1 HETATM 12 C C3' CDC . . . C 2 13.924 -24.313 27.428 1 56.17 ? C3' CDC 1000 A 1 HETATM 13 C C4' CDC . . . C 2 14.054 -25.81 27.179 1 56.66 ? C4' CDC 1000 A 1 HETATM 14 O O4' CDC . . . C 2 13.425 -26.036 25.897 1 56.91 ? O4' CDC 1000 A 1 HETATM 15 O O3' CDC . . . C 2 14.965 -23.863 28.287 1 54.7 ? O3' CDC 1000 A 1 HETATM 16 C C5' CDC . . . C 2 13.423 -26.687 28.231 1 56.3 ? C5' CDC 1000 A 1 HETATM 17 O O5' CDC . . . C 2 13.239 -27.992 27.66 1 56.12 ? O5' CDC 1000 A 1 HETATM 18 P PA CDC . . . C 2 12.042 -29.007 27.984 1 57.68 ? PA CDC 1000 A 1 HETATM 19 O O1A CDC . . . C 2 10.933 -28.857 27.017 1 59.56 ? O1A CDC 1000 A 1 HETATM 20 O O2A CDC . . . C 2 11.644 -28.715 29.418 1 54.47 ? O2A CDC 1000 A 1 HETATM 21 O O3A CDC . . . C 2 12.781 -30.351 28.025 1 60.68 ? O3A CDC 1000 A 1 HETATM 22 P PB CDC . . . C 2 13.824 -31.429 27.475 1 63.08 ? PB CDC 1000 A 1 HETATM 23 O O1B CDC . . . C 2 15.118 -31.149 28.368 1 64.92 ? O1B CDC 1000 A 1 HETATM 24 O O2B CDC . . . C 2 13.352 -32.794 27.792 1 64.63 ? O2B CDC 1000 A 1 HETATM 25 O O3B CDC . . . C 2 14.099 -31.071 26.066 1 63.7 ? O3B CDC 1000 A 1 HETATM 26 C C14 CDC . . . C 2 15.821 -29.879 28.366 1 63.7 ? C14 CDC 1000 A 1 HETATM 27 C C15 CDC . . . C 2 17.32 -30.018 28.282 1 62.52 ? C15 CDC 1000 A 1 HETATM 28 N N11 CDC . . . C 2 17.9 -30.334 26.917 1 62.94 ? N11 CDC 1000 A 1 HETATM 29 C C16 CDC . . . C 2 17.51 -31.712 26.486 1 64.21 ? C16 CDC 1000 A 1 HETATM 30 C C17 CDC . . . C 2 19.389 -30.276 27.021 1 61.85 ? C17 CDC 1000 A 1 HETATM 31 C C18 CDC . . . C 2 17.454 -29.359 25.869 1 64.29 ? C18 CDC 1000 A 1 HETATM 32 H H5 CDC . . . C 2 8.825 -25.251 26.484 1 56.3 ? H5 CDC 1000 A 1 HETATM 33 H H6 CDC . . . C 2 11.2 -25.687 26.769 1 57.28 ? H6 CDC 1000 A 1 HETATM 34 H H41 CDC . . . C 2 7.146 -24.076 25.132 1 56.46 ? H41 CDC 1000 A 1 HETATM 35 H H42 CDC . . . C 2 7.568 -23.139 23.723 1 56.62 ? H42 CDC 1000 A 1 HETATM 36 H H1' CDC . . . C 2 13.705 -24.928 24.233 1 56.89 ? H1' CDC 1000 A 1 HETATM 37 H H2' CDC . . . C 2 13.54 -22.768 25.99 1 56.48 ? H2' CDC 1000 A 1 HETATM 38 H "HO'2" CDC . . . C 2 15.703 -22.854 25.968 1 56.4 ? "HO'2" CDC 1000 A 1 HETATM 39 H H3' CDC . . . C 2 12.98 -24.067 27.909 1 56.15 ? H3' CDC 1000 A 1 HETATM 40 H H4' CDC . . . C 2 15.085 -26.108 27.002 1 56.74 ? H4' CDC 1000 A 1 HETATM 41 H H3T CDC . . . C 2 14.864 -24.321 29.162 1 54.57 ? H3T CDC 1000 A 1 HETATM 42 H "H5'1" CDC . . . C 2 12.448 -26.336 28.562 1 56.37 ? "H5'1" CDC 1000 A 1 HETATM 43 H "H5'2" CDC . . . C 2 14.069 -26.739 29.106 1 56.42 ? "H5'2" CDC 1000 A 1 HETATM 44 H HO2A CDC . . . C 2 10.724 -28.725 29.786 1 54.11 ? HO2A CDC 1000 A 1 HETATM 45 H H141 CDC . . . C 2 15.618 -29.391 29.316 1 63.67 ? H141 CDC 1000 A 1 HETATM 46 H H142 CDC . . . C 2 15.381 -29.233 27.609 1 63.76 ? H142 CDC 1000 A 1 HETATM 47 H H151 CDC . . . C 2 17.636 -30.829 28.935 1 62.46 ? H151 CDC 1000 A 1 HETATM 48 H H152 CDC . . . C 2 17.804 -29.137 28.698 1 62.63 ? H152 CDC 1000 A 1 HETATM 49 H H161 CDC . . . C 2 17.67 -32.45 27.27 1 64.42 ? H161 CDC 1000 A 1 HETATM 50 H H162 CDC . . . C 2 16.464 -31.771 26.193 1 64.2 ? H162 CDC 1000 A 1 HETATM 51 H H163 CDC . . . C 2 18.092 -32.021 25.621 1 64.41 ? H163 CDC 1000 A 1 HETATM 52 H H171 CDC . . . C 2 19.878 -30.463 26.066 1 61.81 ? H171 CDC 1000 A 1 HETATM 53 H H172 CDC . . . C 2 19.737 -29.302 27.361 1 61.89 ? H172 CDC 1000 A 1 HETATM 54 H H173 CDC . . . C 2 19.783 -31.008 27.725 1 61.97 ? H173 CDC 1000 A 1 HETATM 55 H H181 CDC . . . C 2 16.41 -29.499 25.593 1 64.44 ? H181 CDC 1000 A 1 HETATM 56 H H182 CDC . . . C 2 17.552 -28.319 26.172 1 64.31 ? H182 CDC 1000 A 1 HETATM 57 H H183 CDC . . . C 2 18.036 -29.459 24.955 1 64.34 ? H183 CDC 1000 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 57 #