data_4BEY # _model_server_result.job_id amz9MW4aM4QCkfobBtubTw _model_server_result.datetime_utc '2024-11-13 05:30:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bey # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1334}' # _entry.id 4BEY # _exptl.entry_id 4BEY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 7 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4BEY _cell.length_a 242.44 _cell.length_b 242.44 _cell.length_c 110.36 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BEY _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 1330 NAG 3 n C NAG 2 C 2 NAG A 1331 NAG 3 n C BMA 3 C 3 BMA A 1332 BMA 3 n C MAN 4 C 4 MAN A 1333 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 2 1_555 A SG CYS 283 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf2 A SG CYS 111 A CYS 110 1_555 A SG CYS 188 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 A ND2 ASN 16 A ASN 15 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale3 A SG CYS 324 A CYS 323 1_555 F C1 PLM . A PLM 1329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.676 ? covale ? covale4 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale5 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale6 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 106 n n C1 C2 BOG sing 107 n n C1 O5 BOG sing 108 n n C1 H1 BOG sing 109 n n O1 C1' BOG sing 110 n n C2 O2 BOG sing 111 n n C2 C3 BOG sing 112 n n C2 H2 BOG sing 113 n n O2 HO2 BOG sing 114 n n C3 O3 BOG sing 115 n n C3 C4 BOG sing 116 n n C3 H3 BOG sing 117 n n O3 HO3 BOG sing 118 n n C4 O4 BOG sing 119 n n C4 C5 BOG sing 120 n n C4 H4 BOG sing 121 n n O4 HO4 BOG sing 122 n n C5 O5 BOG sing 123 n n C5 C6 BOG sing 124 n n C5 H5 BOG sing 125 n n C6 O6 BOG sing 126 n n C6 H61 BOG sing 127 n n C6 H62 BOG sing 128 n n O6 HO6 BOG sing 129 n n C1' C2' BOG sing 130 n n C1' "H1'1" BOG sing 131 n n C1' "H1'2" BOG sing 132 n n C2' C3' BOG sing 133 n n C2' "H2'1" BOG sing 134 n n C2' "H2'2" BOG sing 135 n n C3' C4' BOG sing 136 n n C3' "H3'1" BOG sing 137 n n C3' "H3'2" BOG sing 138 n n C4' C5' BOG sing 139 n n C4' "H4'1" BOG sing 140 n n C4' "H4'2" BOG sing 141 n n C5' C6' BOG sing 142 n n C5' "H5'1" BOG sing 143 n n C5' "H5'2" BOG sing 144 n n C6' C7' BOG sing 145 n n C6' "H6'1" BOG sing 146 n n C6' "H6'2" BOG sing 147 n n C7' C8' BOG sing 148 n n C7' "H7'1" BOG sing 149 n n C7' "H7'2" BOG sing 150 n n C8' "H8'1" BOG sing 151 n n C8' "H8'2" BOG sing 152 n n C8' "H8'3" BOG sing 153 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4BEY _atom_sites.fract_transf_matrix[1][1] 0.004125 _atom_sites.fract_transf_matrix[1][2] 0.002381 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004763 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009061 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SO4 A 1 1327 1327 SO4 SO4 . E 5 ACT A 1 1328 1328 ACT ACT . F 6 PLM A 1 1329 1329 PLM PLM . G 7 BOG A 1 1334 1334 BOG BOG . H 8 HOH A 1 2001 2001 HOH HOH . H 8 HOH A 2 2002 2002 HOH HOH . H 8 HOH A 3 2003 2003 HOH HOH . H 8 HOH A 4 2004 2004 HOH HOH . H 8 HOH A 5 2005 2005 HOH HOH . H 8 HOH A 6 2006 2006 HOH HOH . H 8 HOH A 7 2007 2007 HOH HOH . H 8 HOH A 8 2008 2008 HOH HOH . H 8 HOH A 9 2009 2009 HOH HOH . H 8 HOH A 10 2010 2010 HOH HOH . H 8 HOH A 11 2011 2011 HOH HOH . H 8 HOH A 12 2012 2012 HOH HOH . H 8 HOH A 13 2013 2013 HOH HOH . H 8 HOH A 14 2014 2014 HOH HOH . H 8 HOH A 15 2015 2015 HOH HOH . H 8 HOH A 16 2016 2016 HOH HOH . H 8 HOH A 17 2017 2017 HOH HOH . H 8 HOH A 18 2018 2018 HOH HOH . H 8 HOH A 19 2019 2019 HOH HOH . H 8 HOH A 20 2020 2020 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . G 7 27.388 -57.831 48.914 1 73.85 ? C1 BOG 1334 A 1 HETATM 2 O O1 BOG . . . G 7 26.194 -57.106 48.492 1 63.27 ? O1 BOG 1334 A 1 HETATM 3 C C2 BOG . . . G 7 27.142 -59.323 48.712 1 74.63 ? C2 BOG 1334 A 1 HETATM 4 O O2 BOG . . . G 7 26.024 -59.746 49.494 1 77.85 ? O2 BOG 1334 A 1 HETATM 5 C C3 BOG . . . G 7 28.346 -60.125 49.175 1 76.23 ? C3 BOG 1334 A 1 HETATM 6 O O3 BOG . . . G 7 28.109 -61.501 48.92 1 92.71 ? O3 BOG 1334 A 1 HETATM 7 C C4 BOG . . . G 7 29.563 -59.725 48.404 1 78.78 ? C4 BOG 1334 A 1 HETATM 8 O O4 BOG . . . G 7 30.687 -60.535 48.818 1 69.78 ? O4 BOG 1334 A 1 HETATM 9 C C5 BOG . . . G 7 29.787 -58.21 48.656 1 76.35 ? C5 BOG 1334 A 1 HETATM 10 O O5 BOG . . . G 7 28.616 -57.442 48.21 1 67.2 ? O5 BOG 1334 A 1 HETATM 11 C C6 BOG . . . G 7 31.119 -57.701 48.093 1 64.3 ? C6 BOG 1334 A 1 HETATM 12 O O6 BOG . . . G 7 31.299 -56.36 48.546 1 61.45 ? O6 BOG 1334 A 1 HETATM 13 C C1' BOG . . . G 7 26.073 -55.677 48.578 1 61.45 ? C1' BOG 1334 A 1 HETATM 14 C C2' BOG . . . G 7 24.573 -55.431 48.336 1 61.45 ? C2' BOG 1334 A 1 HETATM 15 C C3' BOG . . . G 7 24.057 -53.973 48.309 1 61.45 ? C3' BOG 1334 A 1 HETATM 16 C C4' BOG . . . G 7 22.566 -54.161 48.001 1 61.45 ? C4' BOG 1334 A 1 HETATM 17 C C5' BOG . . . G 7 21.686 -52.916 47.78 1 61.45 ? C5' BOG 1334 A 1 HETATM 18 C C6' BOG . . . G 7 21.523 -51.903 48.901 1 61.45 ? C6' BOG 1334 A 1 HETATM 19 C C7' BOG . . . G 7 20.562 -50.836 48.342 1 61.45 ? C7' BOG 1334 A 1 HETATM 20 C C8' BOG . . . G 7 20.283 -49.728 49.363 1 61.45 ? C8' BOG 1334 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #