data_4BEZ # _model_server_result.job_id C5I5eq_NU5X8LKDgB28peA _model_server_result.datetime_utc '2024-11-26 17:09:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bez # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1329}' # _entry.id 4BEZ # _exptl.entry_id 4BEZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4BEZ _cell.length_a 242.44 _cell.length_b 242.44 _cell.length_c 110.36 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BEZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 110.36 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1330 NAG 2 n B NAG 2 B 2 NAG A 1331 NAG 2 n B BMA 3 B 3 BMA A 1332 BMA 2 n B MAN 4 B 4 MAN A 1333 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 2 1_555 A SG CYS 283 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 111 A CYS 110 1_555 A SG CYS 188 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A ND2 ASN 16 A ASN 15 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 A SG CYS 324 A CYS 323 1_555 E C1 PLM . A PLM 1329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.789 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale6 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 398 n n C1 O2 PLM doub 399 n n C1 C2 PLM sing 400 n n O1 H PLM sing 401 n n C2 C3 PLM sing 402 n n C2 H21 PLM sing 403 n n C2 H22 PLM sing 404 n n C3 C4 PLM sing 405 n n C3 H31 PLM sing 406 n n C3 H32 PLM sing 407 n n C4 C5 PLM sing 408 n n C4 H41 PLM sing 409 n n C4 H42 PLM sing 410 n n C5 C6 PLM sing 411 n n C5 H51 PLM sing 412 n n C5 H52 PLM sing 413 n n C6 C7 PLM sing 414 n n C6 H61 PLM sing 415 n n C6 H62 PLM sing 416 n n C7 C8 PLM sing 417 n n C7 H71 PLM sing 418 n n C7 H72 PLM sing 419 n n C8 C9 PLM sing 420 n n C8 H81 PLM sing 421 n n C8 H82 PLM sing 422 n n C9 CA PLM sing 423 n n C9 H91 PLM sing 424 n n C9 H92 PLM sing 425 n n CA CB PLM sing 426 n n CA HA1 PLM sing 427 n n CA HA2 PLM sing 428 n n CB CC PLM sing 429 n n CB HB1 PLM sing 430 n n CB HB2 PLM sing 431 n n CC CD PLM sing 432 n n CC HC1 PLM sing 433 n n CC HC2 PLM sing 434 n n CD CE PLM sing 435 n n CD HD1 PLM sing 436 n n CD HD2 PLM sing 437 n n CE CF PLM sing 438 n n CE HE1 PLM sing 439 n n CE HE2 PLM sing 440 n n CF CG PLM sing 441 n n CF HF1 PLM sing 442 n n CF HF2 PLM sing 443 n n CG HG1 PLM sing 444 n n CG HG2 PLM sing 445 n n CG HG3 PLM sing 446 n n # _atom_sites.entry_id 4BEZ _atom_sites.fract_transf_matrix[1][1] 0.004125 _atom_sites.fract_transf_matrix[1][2] 0.002381 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004763 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009061 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ACT A 1 1327 1327 ACT ACT . D 4 SO4 A 1 1328 1328 SO4 SO4 . E 5 PLM A 1 1329 1329 PLM PLM . F 6 BOG A 1 1334 1334 BOG BOG . G 7 HOH A 1 2001 2001 HOH HOH . G 7 HOH A 2 2002 2002 HOH HOH . G 7 HOH A 3 2003 2003 HOH HOH . G 7 HOH A 4 2004 2004 HOH HOH . G 7 HOH A 5 2005 2005 HOH HOH . G 7 HOH A 6 2006 2006 HOH HOH . G 7 HOH A 7 2007 2007 HOH HOH . G 7 HOH A 8 2008 2008 HOH HOH . G 7 HOH A 9 2009 2009 HOH HOH . G 7 HOH A 10 2010 2010 HOH HOH . G 7 HOH A 11 2011 2011 HOH HOH . G 7 HOH A 12 2012 2012 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . E 5 -0.741 -29.736 55.704 1 93.8 ? C1 PLM 1329 A 1 HETATM 2 O O2 PLM . . . E 5 -0.984 -29.073 56.769 1 95.15 ? O2 PLM 1329 A 1 HETATM 3 C C2 PLM . . . E 5 0.617 -30.561 55.659 1 86.35 ? C2 PLM 1329 A 1 HETATM 4 C C3 PLM . . . E 5 1.167 -29.804 56.897 1 88.99 ? C3 PLM 1329 A 1 HETATM 5 C C4 PLM . . . E 5 2.324 -30.231 57.766 1 87.02 ? C4 PLM 1329 A 1 HETATM 6 C C5 PLM . . . E 5 3.768 -30.473 57.296 1 84.16 ? C5 PLM 1329 A 1 HETATM 7 C C6 PLM . . . E 5 4.581 -30.609 58.613 1 72.44 ? C6 PLM 1329 A 1 HETATM 8 C C7 PLM . . . E 5 5.975 -31.084 58.233 1 76.07 ? C7 PLM 1329 A 1 HETATM 9 C C8 PLM . . . E 5 6.853 -31.196 59.478 1 64.6 ? C8 PLM 1329 A 1 HETATM 10 C C9 PLM . . . E 5 8.198 -31.799 59.041 1 57.42 ? C9 PLM 1329 A 1 HETATM 11 C CA PLM . . . E 5 9.198 -31.943 60.207 1 55.11 ? CA PLM 1329 A 1 HETATM 12 C CB PLM . . . E 5 10.519 -32.58 59.715 1 49.66 ? CB PLM 1329 A 1 HETATM 13 C CC PLM . . . E 5 10.138 -33.951 59.175 1 50.94 ? CC PLM 1329 A 1 HETATM 14 C CD PLM . . . E 5 11.254 -34.828 58.568 1 49.6 ? CD PLM 1329 A 1 HETATM 15 C CE PLM . . . E 5 12.414 -35.232 59.489 1 47.17 ? CE PLM 1329 A 1 HETATM 16 C CF PLM . . . E 5 13.31 -36.162 58.638 1 48.45 ? CF PLM 1329 A 1 HETATM 17 C CG PLM . . . E 5 14.525 -36.689 59.404 1 54.19 ? CG PLM 1329 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 984 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #