data_4BEZ
#
_model_server_result.job_id            f3TAmTe9a8C0W523YH8sfQ 
_model_server_result.datetime_utc      '2024-11-13 04:44:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4bez 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1334}' 
#
_entry.id    4BEZ 
#
_exptl.entry_id    4BEZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          6 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4BEZ 
_cell.length_a            242.44 
_cell.length_b            242.44 
_cell.length_c            110.36 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4BEZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 110.36 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG A 1330 NAG 
2 n B NAG 2 B 2 NAG A 1331 NAG 
2 n B BMA 3 B 3 BMA A 1332 BMA 
2 n B MAN 4 B 4 MAN A 1333 MAN 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 A CYS 2 1_555 A SG CYS 283 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 A SG CYS 111 A CYS 110 1_555 A SG CYS 188 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 A ND2 ASN 16 A ASN 15 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale3 A SG CYS 324 A CYS 323 1_555 E C1 PLM . A PLM 1329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.789 ? 
covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale5 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? 
covale ? covale6 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 106 n n 
C1 C2 BOG sing 107 n n 
C1 O5 BOG sing 108 n n 
C1 H1 BOG sing 109 n n 
O1 C1' BOG sing 110 n n 
C2 O2 BOG sing 111 n n 
C2 C3 BOG sing 112 n n 
C2 H2 BOG sing 113 n n 
O2 HO2 BOG sing 114 n n 
C3 O3 BOG sing 115 n n 
C3 C4 BOG sing 116 n n 
C3 H3 BOG sing 117 n n 
O3 HO3 BOG sing 118 n n 
C4 O4 BOG sing 119 n n 
C4 C5 BOG sing 120 n n 
C4 H4 BOG sing 121 n n 
O4 HO4 BOG sing 122 n n 
C5 O5 BOG sing 123 n n 
C5 C6 BOG sing 124 n n 
C5 H5 BOG sing 125 n n 
C6 O6 BOG sing 126 n n 
C6 H61 BOG sing 127 n n 
C6 H62 BOG sing 128 n n 
O6 HO6 BOG sing 129 n n 
C1' C2' BOG sing 130 n n 
C1' "H1'1" BOG sing 131 n n 
C1' "H1'2" BOG sing 132 n n 
C2' C3' BOG sing 133 n n 
C2' "H2'1" BOG sing 134 n n 
C2' "H2'2" BOG sing 135 n n 
C3' C4' BOG sing 136 n n 
C3' "H3'1" BOG sing 137 n n 
C3' "H3'2" BOG sing 138 n n 
C4' C5' BOG sing 139 n n 
C4' "H4'1" BOG sing 140 n n 
C4' "H4'2" BOG sing 141 n n 
C5' C6' BOG sing 142 n n 
C5' "H5'1" BOG sing 143 n n 
C5' "H5'2" BOG sing 144 n n 
C6' C7' BOG sing 145 n n 
C6' "H6'1" BOG sing 146 n n 
C6' "H6'2" BOG sing 147 n n 
C7' C8' BOG sing 148 n n 
C7' "H7'1" BOG sing 149 n n 
C7' "H7'2" BOG sing 150 n n 
C8' "H8'1" BOG sing 151 n n 
C8' "H8'2" BOG sing 152 n n 
C8' "H8'3" BOG sing 153 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     4BEZ 
_atom_sites.fract_transf_matrix[1][1]    0.004125 
_atom_sites.fract_transf_matrix[1][2]    0.002381 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004763 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009061 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ACT A 1 1327 1327 ACT ACT . 
D 4 SO4 A 1 1328 1328 SO4 SO4 . 
E 5 PLM A 1 1329 1329 PLM PLM . 
F 6 BOG A 1 1334 1334 BOG BOG . 
G 7 HOH A 1 2001 2001 HOH HOH . 
G 7 HOH A 2 2002 2002 HOH HOH . 
G 7 HOH A 3 2003 2003 HOH HOH . 
G 7 HOH A 4 2004 2004 HOH HOH . 
G 7 HOH A 5 2005 2005 HOH HOH . 
G 7 HOH A 6 2006 2006 HOH HOH . 
G 7 HOH A 7 2007 2007 HOH HOH . 
G 7 HOH A 8 2008 2008 HOH HOH . 
G 7 HOH A 9 2009 2009 HOH HOH . 
G 7 HOH A 10 2010 2010 HOH HOH . 
G 7 HOH A 11 2011 2011 HOH HOH . 
G 7 HOH A 12 2012 2012 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . F 6 27.17 -57.893 49.056 1 64.5 ? C1 BOG 1334 A 1 
HETATM 2 O O1 BOG . . . F 6 25.98 -57.113 48.629 1 57.61 ? O1 BOG 1334 A 1 
HETATM 3 C C2 BOG . . . F 6 26.931 -59.324 48.671 1 64.14 ? C2 BOG 1334 A 1 
HETATM 4 O O2 BOG . . . F 6 25.733 -59.787 49.358 1 64.64 ? O2 BOG 1334 A 1 
HETATM 5 C C3 BOG . . . F 6 28.07 -60.205 49.175 1 60.06 ? C3 BOG 1334 A 1 
HETATM 6 O O3 BOG . . . F 6 27.848 -61.551 48.819 1 74.62 ? O3 BOG 1334 A 1 
HETATM 7 C C4 BOG . . . F 6 29.322 -59.761 48.497 1 67.27 ? C4 BOG 1334 A 1 
HETATM 8 O O4 BOG . . . F 6 30.384 -60.598 48.957 1 66.56 ? O4 BOG 1334 A 1 
HETATM 9 C C5 BOG . . . F 6 29.556 -58.274 48.88 1 65.74 ? C5 BOG 1334 A 1 
HETATM 10 O O5 BOG . . . F 6 28.425 -57.456 48.431 1 63.08 ? O5 BOG 1334 A 1 
HETATM 11 C C6 BOG . . . F 6 30.921 -57.792 48.339 1 53.37 ? C6 BOG 1334 A 1 
HETATM 12 O O6 BOG . . . F 6 31.198 -56.474 48.809 1 48.86 ? O6 BOG 1334 A 1 
HETATM 13 C C1' BOG . . . F 6 25.846 -55.718 48.922 1 50.13 ? C1' BOG 1334 A 1 
HETATM 14 C C2' BOG . . . F 6 24.42 -55.414 48.454 1 49.53 ? C2' BOG 1334 A 1 
HETATM 15 C C3' BOG . . . F 6 23.914 -53.968 48.612 1 45.77 ? C3' BOG 1334 A 1 
HETATM 16 C C4' BOG . . . F 6 22.51 -53.986 47.998 1 47.61 ? C4' BOG 1334 A 1 
HETATM 17 C C5' BOG . . . F 6 21.727 -52.662 47.897 1 46.51 ? C5' BOG 1334 A 1 
HETATM 18 C C6' BOG . . . F 6 21.374 -51.903 49.169 1 49.5 ? C6' BOG 1334 A 1 
HETATM 19 C C7' BOG . . . F 6 20.582 -50.665 48.692 1 51.7 ? C7' BOG 1334 A 1 
HETATM 20 C C8' BOG . . . F 6 20.157 -49.767 49.855 1 46.79 ? C8' BOG 1334 A 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           20 
#