data_4BFM # _model_server_result.job_id QlbfygDFLcaSunVBiZGpFA _model_server_result.datetime_utc '2025-07-31 03:32:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bfm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1000}' # _entry.id 4BFM # _exptl.entry_id 4BFM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BFM _cell.length_a 35.799 _cell.length_b 75.711 _cell.length_c 128.088 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BFM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4BFM _atom_sites.fract_transf_matrix[1][1] 0.027934 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013208 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007807 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 1000 1000 ANP ANP . C 3 SO4 A 1 2001 2001 SO4 SO4 . D 3 SO4 A 1 2002 2002 SO4 SO4 . E 3 SO4 A 1 2003 2003 SO4 SO4 . F 3 SO4 A 1 2004 2004 SO4 SO4 . G 3 SO4 A 1 2006 2006 SO4 SO4 . H 3 SO4 A 1 2007 2007 SO4 SO4 . I 4 HOH A 1 3001 3001 HOH HOH . I 4 HOH A 2 3002 3002 HOH HOH . I 4 HOH A 3 3003 3003 HOH HOH . I 4 HOH A 4 3004 3004 HOH HOH . I 4 HOH A 5 3005 3005 HOH HOH . I 4 HOH A 6 3006 3006 HOH HOH . I 4 HOH A 7 3007 3007 HOH HOH . I 4 HOH A 8 3008 3008 HOH HOH . I 4 HOH A 9 3009 3009 HOH HOH . I 4 HOH A 10 3010 3010 HOH HOH . I 4 HOH A 11 3011 3011 HOH HOH . I 4 HOH A 12 3012 3012 HOH HOH . I 4 HOH A 13 3013 3013 HOH HOH . I 4 HOH A 14 3014 3014 HOH HOH . I 4 HOH A 15 3015 3015 HOH HOH . I 4 HOH A 16 3016 3016 HOH HOH . I 4 HOH A 17 3017 3017 HOH HOH . I 4 HOH A 18 3018 3018 HOH HOH . I 4 HOH A 19 3019 3019 HOH HOH . I 4 HOH A 20 3020 3020 HOH HOH . I 4 HOH A 21 3021 3021 HOH HOH . I 4 HOH A 22 3022 3022 HOH HOH . I 4 HOH A 23 3023 3023 HOH HOH . I 4 HOH A 24 3024 3024 HOH HOH . I 4 HOH A 25 3025 3025 HOH HOH . I 4 HOH A 26 3026 3026 HOH HOH . I 4 HOH A 27 3027 3027 HOH HOH . I 4 HOH A 28 3028 3028 HOH HOH . I 4 HOH A 29 3029 3029 HOH HOH . I 4 HOH A 30 3030 3030 HOH HOH . I 4 HOH A 31 3031 3031 HOH HOH . I 4 HOH A 32 3032 3032 HOH HOH . I 4 HOH A 33 3033 3033 HOH HOH . I 4 HOH A 34 3034 3034 HOH HOH . I 4 HOH A 35 3035 3035 HOH HOH . I 4 HOH A 36 3036 3036 HOH HOH . I 4 HOH A 37 3037 3037 HOH HOH . I 4 HOH A 38 3038 3038 HOH HOH . I 4 HOH A 39 3039 3039 HOH HOH . I 4 HOH A 40 3040 3040 HOH HOH . I 4 HOH A 41 3041 3041 HOH HOH . I 4 HOH A 42 3042 3042 HOH HOH . I 4 HOH A 43 3043 3043 HOH HOH . I 4 HOH A 44 3044 3044 HOH HOH . I 4 HOH A 45 3045 3045 HOH HOH . I 4 HOH A 46 3046 3046 HOH HOH . I 4 HOH A 47 3047 3047 HOH HOH . I 4 HOH A 48 3048 3048 HOH HOH . I 4 HOH A 49 3049 3049 HOH HOH . I 4 HOH A 50 3050 3050 HOH HOH . I 4 HOH A 51 3051 3051 HOH HOH . I 4 HOH A 52 3052 3052 HOH HOH . I 4 HOH A 53 3053 3053 HOH HOH . I 4 HOH A 54 3054 3054 HOH HOH . I 4 HOH A 55 3055 3055 HOH HOH . I 4 HOH A 56 3056 3056 HOH HOH . I 4 HOH A 57 3057 3057 HOH HOH . I 4 HOH A 58 3058 3058 HOH HOH . I 4 HOH A 59 3059 3059 HOH HOH . I 4 HOH A 60 3060 3060 HOH HOH . I 4 HOH A 61 3061 3061 HOH HOH . I 4 HOH A 62 3062 3062 HOH HOH . I 4 HOH A 63 3063 3063 HOH HOH . I 4 HOH A 64 3064 3064 HOH HOH . I 4 HOH A 65 3065 3065 HOH HOH . I 4 HOH A 66 3066 3066 HOH HOH . I 4 HOH A 67 3067 3067 HOH HOH . I 4 HOH A 68 3068 3068 HOH HOH . I 4 HOH A 69 3069 3069 HOH HOH . I 4 HOH A 70 3070 3070 HOH HOH . I 4 HOH A 71 3071 3071 HOH HOH . I 4 HOH A 72 3072 3072 HOH HOH . I 4 HOH A 73 3073 3073 HOH HOH . I 4 HOH A 74 3074 3074 HOH HOH . I 4 HOH A 75 3075 3075 HOH HOH . I 4 HOH A 76 3076 3076 HOH HOH . I 4 HOH A 77 3077 3077 HOH HOH . I 4 HOH A 78 3078 3078 HOH HOH . I 4 HOH A 79 3079 3079 HOH HOH . I 4 HOH A 80 3080 3080 HOH HOH . I 4 HOH A 81 3081 3081 HOH HOH . I 4 HOH A 82 3082 3082 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 -5.341 -17.244 -33.307 1 36.56 ? PG ANP 1000 A 1 HETATM 2 O O1G ANP . . . B 2 -4.264 -17.803 -34.185 1 43.14 ? O1G ANP 1000 A 1 HETATM 3 O O2G ANP . . . B 2 -6.549 -18.257 -33.239 1 36.07 ? O2G ANP 1000 A 1 HETATM 4 O O3G ANP . . . B 2 -5.862 -15.88 -33.93 1 49.69 ? O3G ANP 1000 A 1 HETATM 5 P PB ANP . . . B 2 -5.803 -16.645 -30.498 1 33.49 ? PB ANP 1000 A 1 HETATM 6 O O1B ANP . . . B 2 -6.991 -17.561 -30.574 1 34.27 ? O1B ANP 1000 A 1 HETATM 7 O O2B ANP . . . B 2 -5.095 -16.916 -29.135 1 39.16 ? O2B ANP 1000 A 1 HETATM 8 N N3B ANP . . . B 2 -4.702 -16.964 -31.746 1 42.35 ? N3B ANP 1000 A 1 HETATM 9 P PA ANP . . . B 2 -5.393 -13.894 -30.904 1 30.13 ? PA ANP 1000 A 1 HETATM 10 O O1A ANP . . . B 2 -4.261 -13.765 -29.952 1 24.92 ? O1A ANP 1000 A 1 HETATM 11 O O2A ANP . . . B 2 -4.984 -14.056 -32.372 1 22.94 ? O2A ANP 1000 A 1 HETATM 12 O O3A ANP . . . B 2 -6.317 -15.148 -30.524 1 45.24 ? O3A ANP 1000 A 1 HETATM 13 O O5' ANP . . . B 2 -6.315 -12.618 -30.746 1 30.8 ? O5' ANP 1000 A 1 HETATM 14 C C5' ANP . . . B 2 -7.61 -12.541 -31.383 1 31.68 ? C5' ANP 1000 A 1 HETATM 15 C C4' ANP . . . B 2 -7.954 -11.099 -31.69 1 22.97 ? C4' ANP 1000 A 1 HETATM 16 O O4' ANP . . . B 2 -8.158 -10.359 -30.463 1 29.29 ? O4' ANP 1000 A 1 HETATM 17 C C3' ANP . . . B 2 -6.89 -10.303 -32.431 1 22.57 ? C3' ANP 1000 A 1 HETATM 18 O O3' ANP . . . B 2 -6.894 -10.543 -33.831 1 38.42 ? O3' ANP 1000 A 1 HETATM 19 C C2' ANP . . . B 2 -7.295 -8.871 -32.084 1 28.34 ? C2' ANP 1000 A 1 HETATM 20 O O2' ANP . . . B 2 -8.434 -8.47 -32.837 1 36.76 ? O2' ANP 1000 A 1 HETATM 21 C C1' ANP . . . B 2 -7.681 -9.031 -30.615 1 26.56 ? C1' ANP 1000 A 1 HETATM 22 N N9 ANP . . . B 2 -6.558 -8.826 -29.697 1 24.9 ? N9 ANP 1000 A 1 HETATM 23 C C8 ANP . . . B 2 -5.658 -9.762 -29.249 1 24.02 ? C8 ANP 1000 A 1 HETATM 24 N N7 ANP . . . B 2 -4.746 -9.288 -28.444 1 18.92 ? N7 ANP 1000 A 1 HETATM 25 C C5 ANP . . . B 2 -5.056 -7.943 -28.349 1 22.35 ? C5 ANP 1000 A 1 HETATM 26 C C6 ANP . . . B 2 -4.455 -6.874 -27.643 1 21.52 ? C6 ANP 1000 A 1 HETATM 27 N N6 ANP . . . B 2 -3.38 -7.013 -26.872 1 18.43 ? N6 ANP 1000 A 1 HETATM 28 N N1 ANP . . . B 2 -5.014 -5.646 -27.775 1 22.04 ? N1 ANP 1000 A 1 HETATM 29 C C2 ANP . . . B 2 -6.081 -5.503 -28.562 1 19 ? C2 ANP 1000 A 1 HETATM 30 N N3 ANP . . . B 2 -6.728 -6.43 -29.271 1 24.21 ? N3 ANP 1000 A 1 HETATM 31 C C4 ANP . . . B 2 -6.16 -7.635 -29.119 1 17.93 ? C4 ANP 1000 A 1 HETATM 32 H HOG2 ANP . . . B 2 -6.675 -18.621 -34.04 1 43.28 ? HOG2 ANP 1000 A 1 HETATM 33 H HOG3 ANP . . . B 2 -6.438 -16.052 -34.571 1 59.63 ? HOG3 ANP 1000 A 1 HETATM 34 H HOB2 ANP . . . B 2 -5.246 -17.752 -28.885 1 46.99 ? HOB2 ANP 1000 A 1 HETATM 35 H HNB1 ANP . . . B 2 -4.168 -17.659 -31.508 1 50.82 ? HNB1 ANP 1000 A 1 HETATM 36 H "H5'1" ANP . . . B 2 -8.284 -12.917 -30.791 1 38.01 ? "H5'1" ANP 1000 A 1 HETATM 37 H "H5'2" ANP . . . B 2 -7.591 -13.054 -32.218 1 38.01 ? "H5'2" ANP 1000 A 1 HETATM 38 H H4' ANP . . . B 2 -8.79 -11.047 -32.196 1 27.56 ? H4' ANP 1000 A 1 HETATM 39 H H3' ANP . . . B 2 -6.032 -10.499 -32.049 1 27.09 ? H3' ANP 1000 A 1 HETATM 40 H H2' ANP . . . B 2 -6.551 -8.262 -32.168 1 34.01 ? H2' ANP 1000 A 1 HETATM 41 H HO2' ANP . . . B 2 -8.426 -7.589 -32.941 1 44.11 ? HO2' ANP 1000 A 1 HETATM 42 H H1' ANP . . . B 2 -8.394 -8.402 -30.421 1 31.88 ? H1' ANP 1000 A 1 HETATM 43 H H8 ANP . . . B 2 -5.702 -10.684 -29.498 1 28.82 ? H8 ANP 1000 A 1 HETATM 44 H HN61 ANP . . . B 2 -2.965 -6.267 -26.518 1 22.12 ? HN61 ANP 1000 A 1 HETATM 45 H HN62 ANP . . . B 2 -3.051 -7.847 -26.693 1 22.12 ? HN62 ANP 1000 A 1 HETATM 46 H H2 ANP . . . B 2 -6.444 -4.604 -28.618 1 22.8 ? H2 ANP 1000 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 375 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 46 #