data_4BFQ
#
_model_server_result.job_id            gxEDgoxfTNnWGGBWYawpwQ 
_model_server_result.datetime_utc      '2024-10-20 19:38:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4bfq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":1206}' 
#
_entry.id    4BFQ 
#
_exptl.entry_id    4BFQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.67 
_cell.angle_gamma         90 
_cell.entry_id            4BFQ 
_cell.length_a            80.73 
_cell.length_b            78.33 
_cell.length_c            106.53 
_cell.Z_PDB               10 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4BFQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             Q 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 125 A CYS 125 1_555 A SG CYS 138 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 188 A CYS 188 1_555 A SG CYS 189 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
disulf ? disulf3 B SG CYS 125 B CYS 125 1_555 B SG CYS 138 B CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf4 B SG CYS 188 B CYS 188 1_555 B SG CYS 189 B CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf5 C SG CYS 125 C CYS 125 1_555 C SG CYS 138 C CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf6 C SG CYS 188 C CYS 188 1_555 C SG CYS 189 C CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf7 D SG CYS 125 D CYS 125 1_555 D SG CYS 138 D CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf8 D SG CYS 188 D CYS 188 1_555 D SG CYS 189 D CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf9 E SG CYS 125 E CYS 125 1_555 E SG CYS 138 E CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf10 E SG CYS 188 E CYS 188 1_555 E SG CYS 189 E CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 177 n n 
C1 C2 GOL sing 178 n n 
C1 H11 GOL sing 179 n n 
C1 H12 GOL sing 180 n n 
O1 HO1 GOL sing 181 n n 
C2 O2 GOL sing 182 n n 
C2 C3 GOL sing 183 n n 
C2 H2 GOL sing 184 n n 
O2 HO2 GOL sing 185 n n 
C3 O3 GOL sing 186 n n 
C3 H31 GOL sing 187 n n 
C3 H32 GOL sing 188 n n 
O3 HO3 GOL sing 189 n n 
#
_atom_sites.entry_id                     4BFQ 
_atom_sites.fract_transf_matrix[1][1]    0.012387 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002785 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012767 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009621 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 083 A 1 301 301 083 083 . 
G 2 083 A 1 302 302 083 083 . 
H 2 083 A 1 303 303 083 083 . 
I 2 083 B 1 301 301 083 083 . 
J 2 083 B 1 302 302 083 083 . 
K 2 083 C 1 301 301 083 083 . 
L 2 083 C 1 302 302 083 083 . 
M 2 083 C 1 303 303 083 083 . 
N 2 083 D 1 301 301 083 083 . 
O 2 083 D 1 302 302 083 083 . 
P 2 083 D 1 303 303 083 083 . 
Q 3 GOL D 1 1206 1206 GOL GOL . 
R 2 083 E 1 301 301 083 083 . 
S 2 083 E 1 302 302 083 083 . 
T 2 083 E 1 303 303 083 083 . 
U 4 HOH A 1 2001 2001 HOH HOH . 
U 4 HOH A 2 2002 2002 HOH HOH . 
U 4 HOH A 3 2003 2003 HOH HOH . 
U 4 HOH A 4 2004 2004 HOH HOH . 
U 4 HOH A 5 2005 2005 HOH HOH . 
U 4 HOH A 6 2006 2006 HOH HOH . 
U 4 HOH A 7 2007 2007 HOH HOH . 
U 4 HOH A 8 2008 2008 HOH HOH . 
U 4 HOH A 9 2009 2009 HOH HOH . 
U 4 HOH A 10 2010 2010 HOH HOH . 
U 4 HOH A 11 2011 2011 HOH HOH . 
U 4 HOH A 12 2012 2012 HOH HOH . 
U 4 HOH A 13 2013 2013 HOH HOH . 
U 4 HOH A 14 2014 2014 HOH HOH . 
U 4 HOH A 15 2015 2015 HOH HOH . 
U 4 HOH A 16 2016 2016 HOH HOH . 
U 4 HOH A 17 2017 2017 HOH HOH . 
U 4 HOH A 18 2018 2018 HOH HOH . 
U 4 HOH A 19 2019 2019 HOH HOH . 
V 4 HOH B 1 2001 2001 HOH HOH . 
V 4 HOH B 2 2002 2002 HOH HOH . 
V 4 HOH B 3 2003 2003 HOH HOH . 
V 4 HOH B 4 2004 2004 HOH HOH . 
V 4 HOH B 5 2005 2005 HOH HOH . 
V 4 HOH B 6 2006 2006 HOH HOH . 
V 4 HOH B 7 2007 2007 HOH HOH . 
V 4 HOH B 8 2008 2008 HOH HOH . 
V 4 HOH B 9 2009 2009 HOH HOH . 
V 4 HOH B 10 2010 2010 HOH HOH . 
V 4 HOH B 11 2011 2011 HOH HOH . 
V 4 HOH B 12 2012 2012 HOH HOH . 
V 4 HOH B 13 2013 2013 HOH HOH . 
V 4 HOH B 14 2014 2014 HOH HOH . 
V 4 HOH B 15 2015 2015 HOH HOH . 
V 4 HOH B 16 2016 2016 HOH HOH . 
V 4 HOH B 17 2017 2017 HOH HOH . 
V 4 HOH B 18 2018 2018 HOH HOH . 
V 4 HOH B 19 2019 2019 HOH HOH . 
V 4 HOH B 20 2020 2020 HOH HOH . 
V 4 HOH B 21 2021 2021 HOH HOH . 
V 4 HOH B 22 2022 2022 HOH HOH . 
V 4 HOH B 23 2023 2023 HOH HOH . 
V 4 HOH B 24 2024 2024 HOH HOH . 
W 4 HOH C 1 2001 2001 HOH HOH . 
W 4 HOH C 2 2002 2002 HOH HOH . 
W 4 HOH C 3 2003 2003 HOH HOH . 
W 4 HOH C 4 2004 2004 HOH HOH . 
W 4 HOH C 5 2005 2005 HOH HOH . 
W 4 HOH C 6 2006 2006 HOH HOH . 
W 4 HOH C 7 2007 2007 HOH HOH . 
W 4 HOH C 8 2008 2008 HOH HOH . 
W 4 HOH C 9 2009 2009 HOH HOH . 
W 4 HOH C 10 2010 2010 HOH HOH . 
W 4 HOH C 11 2011 2011 HOH HOH . 
W 4 HOH C 12 2012 2012 HOH HOH . 
W 4 HOH C 13 2013 2013 HOH HOH . 
W 4 HOH C 14 2014 2014 HOH HOH . 
W 4 HOH C 15 2015 2015 HOH HOH . 
W 4 HOH C 16 2016 2016 HOH HOH . 
W 4 HOH C 17 2017 2017 HOH HOH . 
W 4 HOH C 18 2018 2018 HOH HOH . 
W 4 HOH C 19 2019 2019 HOH HOH . 
W 4 HOH C 20 2020 2020 HOH HOH . 
W 4 HOH C 21 2021 2021 HOH HOH . 
X 4 HOH D 1 2001 2001 HOH HOH . 
X 4 HOH D 2 2002 2002 HOH HOH . 
X 4 HOH D 3 2003 2003 HOH HOH . 
X 4 HOH D 4 2004 2004 HOH HOH . 
X 4 HOH D 5 2005 2005 HOH HOH . 
X 4 HOH D 6 2006 2006 HOH HOH . 
X 4 HOH D 7 2007 2007 HOH HOH . 
X 4 HOH D 8 2008 2008 HOH HOH . 
X 4 HOH D 9 2009 2009 HOH HOH . 
X 4 HOH D 10 2010 2010 HOH HOH . 
X 4 HOH D 11 2011 2011 HOH HOH . 
X 4 HOH D 12 2012 2012 HOH HOH . 
X 4 HOH D 13 2013 2013 HOH HOH . 
X 4 HOH D 14 2014 2014 HOH HOH . 
X 4 HOH D 15 2015 2015 HOH HOH . 
X 4 HOH D 16 2016 2016 HOH HOH . 
X 4 HOH D 17 2017 2017 HOH HOH . 
X 4 HOH D 18 2018 2018 HOH HOH . 
X 4 HOH D 19 2019 2019 HOH HOH . 
X 4 HOH D 20 2020 2020 HOH HOH . 
X 4 HOH D 21 2021 2021 HOH HOH . 
X 4 HOH D 22 2022 2022 HOH HOH . 
X 4 HOH D 23 2023 2023 HOH HOH . 
X 4 HOH D 24 2024 2024 HOH HOH . 
X 4 HOH D 25 2025 2025 HOH HOH . 
X 4 HOH D 26 2026 2026 HOH HOH . 
X 4 HOH D 27 2027 2027 HOH HOH . 
X 4 HOH D 28 2028 2028 HOH HOH . 
X 4 HOH D 29 2029 2029 HOH HOH . 
X 4 HOH D 30 2030 2030 HOH HOH . 
X 4 HOH D 31 2031 2031 HOH HOH . 
X 4 HOH D 32 2032 2032 HOH HOH . 
X 4 HOH D 33 2033 2033 HOH HOH . 
X 4 HOH D 34 2034 2034 HOH HOH . 
X 4 HOH D 35 2035 2035 HOH HOH . 
X 4 HOH D 36 2036 2036 HOH HOH . 
Y 4 HOH E 1 2001 2001 HOH HOH . 
Y 4 HOH E 2 2002 2002 HOH HOH . 
Y 4 HOH E 3 2003 2003 HOH HOH . 
Y 4 HOH E 4 2004 2004 HOH HOH . 
Y 4 HOH E 5 2005 2005 HOH HOH . 
Y 4 HOH E 6 2006 2006 HOH HOH . 
Y 4 HOH E 7 2007 2007 HOH HOH . 
Y 4 HOH E 8 2008 2008 HOH HOH . 
Y 4 HOH E 9 2009 2009 HOH HOH . 
Y 4 HOH E 10 2010 2010 HOH HOH . 
Y 4 HOH E 11 2011 2011 HOH HOH . 
Y 4 HOH E 12 2012 2012 HOH HOH . 
Y 4 HOH E 13 2013 2013 HOH HOH . 
Y 4 HOH E 14 2014 2014 HOH HOH . 
Y 4 HOH E 15 2015 2015 HOH HOH . 
Y 4 HOH E 16 2016 2016 HOH HOH . 
Y 4 HOH E 17 2017 2017 HOH HOH . 
Y 4 HOH E 18 2018 2018 HOH HOH . 
Y 4 HOH E 19 2019 2019 HOH HOH . 
Y 4 HOH E 20 2020 2020 HOH HOH . 
Y 4 HOH E 21 2021 2021 HOH HOH . 
Y 4 HOH E 22 2022 2022 HOH HOH . 
Y 4 HOH E 23 2023 2023 HOH HOH . 
Y 4 HOH E 24 2024 2024 HOH HOH . 
Y 4 HOH E 25 2025 2025 HOH HOH . 
Y 4 HOH E 26 2026 2026 HOH HOH . 
Y 4 HOH E 27 2027 2027 HOH HOH . 
Y 4 HOH E 28 2028 2028 HOH HOH . 
Y 4 HOH E 29 2029 2029 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . Q 3 23.412 -10.844 0.413 1 55.8 ? C1 GOL 1206 D 1 
HETATM 2 O O1 GOL . . . Q 3 24.389 -11.879 0.618 1 66.68 ? O1 GOL 1206 D 1 
HETATM 3 C C2 GOL . . . Q 3 22.048 -11.197 1.022 1 50.02 ? C2 GOL 1206 D 1 
HETATM 4 O O2 GOL . . . Q 3 21.971 -10.878 2.418 1 45.39 ? O2 GOL 1206 D 1 
HETATM 5 C C3 GOL . . . Q 3 21.786 -12.678 0.899 1 48.69 ? C3 GOL 1206 D 1 
HETATM 6 O O3 GOL . . . Q 3 20.429 -12.979 1.25 1 40.48 ? O3 GOL 1206 D 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#