data_4BFR # _model_server_result.job_id I2XcH1E2exEWLWXzWjQDtQ _model_server_result.datetime_utc '2024-11-22 10:12:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bfr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2000}' # _entry.id 4BFR # _exptl.entry_id 4BFR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 354.403 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[2-(2-METHYL-2,3-DIHYDRO-INDOL-1-YL)-2-OXO-ETHYL]-6-MORPHOLIN-4-YL-3H-PYRIMIDIN-4-ONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BFR _cell.length_a 122.306 _cell.length_b 129.034 _cell.length_c 154.898 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BFR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C19 H22 N4 O3' _chem_comp.formula_weight 354.403 _chem_comp.id J82 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[2-(2-METHYL-2,3-DIHYDRO-INDOL-1-YL)-2-OXO-ETHYL]-6-MORPHOLIN-4-YL-3H-PYRIMIDIN-4-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 J82 sing 173 n n C1 N8 J82 sing 174 n n C1 C12 J82 doub 175 n n N2 C3 J82 sing 176 n n N2 C7 J82 sing 177 n n C3 C4 J82 sing 178 n n C4 O5 J82 sing 179 n n O5 C6 J82 sing 180 n n C6 C7 J82 sing 181 n n N8 C9 J82 doub 182 n n C9 N10 J82 sing 183 n n C9 C14 J82 sing 184 n n N10 C11 J82 sing 185 n n C11 C12 J82 sing 186 n n C11 O13 J82 doub 187 n n C14 C15 J82 sing 188 n n C15 O16 J82 doub 189 n n C15 N17 J82 sing 190 n n N17 C19 J82 sing 191 n n N17 C21 J82 sing 192 n n C18 C19 J82 sing 193 n n C18 C20 J82 sing 194 n n C19 C26 J82 sing 195 n n C20 C21 J82 sing 196 n y C20 C25 J82 doub 197 n y C21 C22 J82 doub 198 n y C22 C23 J82 sing 199 n y C23 C24 J82 doub 200 n y C24 C25 J82 sing 201 n y C12 H12 J82 sing 202 n n C3 H31C J82 sing 203 n n C3 H32C J82 sing 204 n n C7 H71C J82 sing 205 n n C7 H72C J82 sing 206 n n C4 H41C J82 sing 207 n n C4 H42C J82 sing 208 n n C6 H61C J82 sing 209 n n C6 H62C J82 sing 210 n n N10 H10 J82 sing 211 n n C14 H141 J82 sing 212 n n C14 H142 J82 sing 213 n n C19 H19 J82 sing 214 n n C18 H181 J82 sing 215 n n C18 H182 J82 sing 216 n n C26 H261 J82 sing 217 n n C26 H262 J82 sing 218 n n C26 H263 J82 sing 219 n n C25 H25 J82 sing 220 n n C22 H22 J82 sing 221 n n C23 H23 J82 sing 222 n n C24 H24 J82 sing 223 n n # _atom_sites.entry_id 4BFR _atom_sites.fract_transf_matrix[1][1] 0.008176 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00775 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006456 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 J82 A 1 2000 2000 J82 J82 . D 2 J82 B 1 2000 2000 J82 J82 . E 3 HOH A 1 2001 2001 HOH HOH . E 3 HOH A 2 2002 2002 HOH HOH . E 3 HOH A 3 2003 2003 HOH HOH . E 3 HOH A 4 2004 2004 HOH HOH . E 3 HOH A 5 2005 2005 HOH HOH . E 3 HOH A 6 2006 2006 HOH HOH . E 3 HOH A 7 2007 2007 HOH HOH . E 3 HOH A 8 2008 2008 HOH HOH . E 3 HOH A 9 2009 2009 HOH HOH . E 3 HOH A 10 2010 2010 HOH HOH . E 3 HOH A 11 2011 2011 HOH HOH . E 3 HOH A 12 2012 2012 HOH HOH . E 3 HOH A 13 2013 2013 HOH HOH . E 3 HOH A 14 2014 2014 HOH HOH . E 3 HOH A 15 2015 2015 HOH HOH . E 3 HOH A 16 2016 2016 HOH HOH . E 3 HOH A 17 2017 2017 HOH HOH . E 3 HOH A 18 2018 2018 HOH HOH . E 3 HOH A 19 2019 2019 HOH HOH . E 3 HOH A 20 2020 2020 HOH HOH . E 3 HOH A 21 2021 2021 HOH HOH . E 3 HOH A 22 2022 2022 HOH HOH . E 3 HOH A 23 2023 2023 HOH HOH . E 3 HOH A 24 2024 2024 HOH HOH . E 3 HOH A 25 2025 2025 HOH HOH . E 3 HOH A 26 2026 2026 HOH HOH . E 3 HOH A 27 2027 2027 HOH HOH . E 3 HOH A 28 2028 2028 HOH HOH . E 3 HOH A 29 2029 2029 HOH HOH . E 3 HOH A 30 2030 2030 HOH HOH . E 3 HOH A 31 2031 2031 HOH HOH . E 3 HOH A 32 2032 2032 HOH HOH . E 3 HOH A 33 2033 2033 HOH HOH . F 3 HOH B 1 2001 2001 HOH HOH . F 3 HOH B 2 2002 2002 HOH HOH . F 3 HOH B 3 2003 2003 HOH HOH . F 3 HOH B 4 2004 2004 HOH HOH . F 3 HOH B 5 2005 2005 HOH HOH . F 3 HOH B 6 2006 2006 HOH HOH . F 3 HOH B 7 2007 2007 HOH HOH . F 3 HOH B 8 2008 2008 HOH HOH . F 3 HOH B 9 2009 2009 HOH HOH . F 3 HOH B 10 2010 2010 HOH HOH . F 3 HOH B 11 2011 2011 HOH HOH . F 3 HOH B 12 2012 2012 HOH HOH . F 3 HOH B 13 2013 2013 HOH HOH . F 3 HOH B 14 2014 2014 HOH HOH . F 3 HOH B 15 2015 2015 HOH HOH . F 3 HOH B 16 2016 2016 HOH HOH . F 3 HOH B 17 2017 2017 HOH HOH . F 3 HOH B 18 2018 2018 HOH HOH . F 3 HOH B 19 2019 2019 HOH HOH . F 3 HOH B 20 2020 2020 HOH HOH . F 3 HOH B 21 2021 2021 HOH HOH . F 3 HOH B 22 2022 2022 HOH HOH . F 3 HOH B 23 2023 2023 HOH HOH . F 3 HOH B 24 2024 2024 HOH HOH . F 3 HOH B 25 2025 2025 HOH HOH . F 3 HOH B 26 2026 2026 HOH HOH . F 3 HOH B 27 2027 2027 HOH HOH . F 3 HOH B 28 2028 2028 HOH HOH . F 3 HOH B 29 2029 2029 HOH HOH . F 3 HOH B 30 2030 2030 HOH HOH . F 3 HOH B 31 2031 2031 HOH HOH . F 3 HOH B 32 2032 2032 HOH HOH . F 3 HOH B 33 2033 2033 HOH HOH . F 3 HOH B 34 2034 2034 HOH HOH . F 3 HOH B 35 2035 2035 HOH HOH . F 3 HOH B 36 2036 2036 HOH HOH . F 3 HOH B 37 2037 2037 HOH HOH . F 3 HOH B 38 2038 2038 HOH HOH . F 3 HOH B 39 2039 2039 HOH HOH . F 3 HOH B 40 2040 2040 HOH HOH . F 3 HOH B 41 2041 2041 HOH HOH . F 3 HOH B 42 2042 2042 HOH HOH . F 3 HOH B 43 2043 2043 HOH HOH . F 3 HOH B 44 2044 2044 HOH HOH . F 3 HOH B 45 2045 2045 HOH HOH . F 3 HOH B 46 2046 2046 HOH HOH . F 3 HOH B 47 2047 2047 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 J82 . . . D 2 -27.764 22.563 29.776 1 50.44 ? C1 J82 2000 B 1 HETATM 2 N N2 J82 . . . D 2 -28.692 21.998 30.635 1 50.24 ? N2 J82 2000 B 1 HETATM 3 C C3 J82 . . . D 2 -29.978 21.485 30.138 1 50.07 ? C3 J82 2000 B 1 HETATM 4 C C4 J82 . . . D 2 -31.017 21.544 31.235 1 50.25 ? C4 J82 2000 B 1 HETATM 5 O O5 J82 . . . D 2 -30.584 20.856 32.41 1 50.43 ? O5 J82 2000 B 1 HETATM 6 C C6 J82 . . . D 2 -29.378 21.437 32.907 1 50.4 ? C6 J82 2000 B 1 HETATM 7 C C7 J82 . . . D 2 -28.266 21.361 31.89 1 50.36 ? C7 J82 2000 B 1 HETATM 8 N N8 J82 . . . D 2 -28.158 22.865 28.507 1 50.59 ? N8 J82 2000 B 1 HETATM 9 C C9 J82 . . . D 2 -27.28 23.404 27.655 1 50.64 ? C9 J82 2000 B 1 HETATM 10 N N10 J82 . . . D 2 -25.955 23.691 28.012 1 50.67 ? N10 J82 2000 B 1 HETATM 11 C C11 J82 . . . D 2 -25.475 23.419 29.281 1 50.82 ? C11 J82 2000 B 1 HETATM 12 C C12 J82 . . . D 2 -26.426 22.834 30.173 1 50.62 ? C12 J82 2000 B 1 HETATM 13 O O13 J82 . . . D 2 -24.298 23.688 29.555 1 51.06 ? O13 J82 2000 B 1 HETATM 14 C C14 J82 . . . D 2 -27.638 23.708 26.223 1 50.76 ? C14 J82 2000 B 1 HETATM 15 C C15 J82 . . . D 2 -27.57 22.532 25.269 1 51.27 ? C15 J82 2000 B 1 HETATM 16 O O16 J82 . . . D 2 -26.568 21.834 25.275 1 51.5 ? O16 J82 2000 B 1 HETATM 17 N N17 J82 . . . D 2 -28.612 22.279 24.416 1 51.48 ? N17 J82 2000 B 1 HETATM 18 C C18 J82 . . . D 2 -30.902 22.325 23.728 1 51.35 ? C18 J82 2000 B 1 HETATM 19 C C19 J82 . . . D 2 -29.822 23.213 24.328 1 51.32 ? C19 J82 2000 B 1 HETATM 20 C C20 J82 . . . D 2 -30.138 21.201 23.081 1 51.59 ? C20 J82 2000 B 1 HETATM 21 C C21 J82 . . . D 2 -28.849 21.136 23.606 1 51.64 ? C21 J82 2000 B 1 HETATM 22 C C22 J82 . . . D 2 -27.99 20.092 23.262 1 51.84 ? C22 J82 2000 B 1 HETATM 23 C C23 J82 . . . D 2 -28.435 19.125 22.367 1 52.18 ? C23 J82 2000 B 1 HETATM 24 C C24 J82 . . . D 2 -29.71 19.2 21.822 1 52.21 ? C24 J82 2000 B 1 HETATM 25 C C25 J82 . . . D 2 -30.562 20.235 22.176 1 51.97 ? C25 J82 2000 B 1 HETATM 26 C C26 J82 . . . D 2 -29.565 24.399 23.408 1 51.27 ? C26 J82 2000 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 45 _model_server_stats.create_model_time_ms 198 _model_server_stats.query_time_ms 400 _model_server_stats.encode_time_ms 52 _model_server_stats.element_count 26 #