data_4BG6 # _model_server_result.job_id L11tvZc3wgme17na1zLm9Q _model_server_result.datetime_utc '2024-11-08 16:58:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bg6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":348}' # _entry.id 4BG6 # _exptl.entry_id 4BG6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 206.367 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description FARNESYL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BG6 _cell.length_a 70.783 _cell.length_b 81.313 _cell.length_c 111.189 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BG6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C LYS 8 Q LYS 345 1_555 C N SEP 9 Q SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 C C SEP 9 Q SEP 346 1_555 C N CYS 10 Q CYS 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 C SG CYS 10 Q CYS 347 1_555 H C1 FAR . Q FAR 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.763 ? covale ? covale4 D C LYS 8 R LYS 345 1_555 D N SEP 9 R SEP 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 D C SEP 9 R SEP 346 1_555 D N CYS 10 R CYS 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 D SG CYS 10 R CYS 347 1_555 I C1 FAR . R FAR 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.757 ? # _chem_comp.formula 'C15 H26' _chem_comp.formula_weight 206.367 _chem_comp.id FAR _chem_comp.mon_nstd_flag . _chem_comp.name FARNESYL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FAR sing 83 n n C1 H11 FAR sing 84 n n C1 H12A FAR sing 85 n n C1 H13 FAR sing 86 n n C2 C3 FAR doub 87 e n C2 H2 FAR sing 88 n n C3 C5 FAR sing 89 n n C3 C4 FAR sing 90 n n C5 C6 FAR sing 91 n n C5 H51 FAR sing 92 n n C5 H52 FAR sing 93 n n C6 C7 FAR sing 94 n n C6 H61 FAR sing 95 n n C6 H62 FAR sing 96 n n C7 C8 FAR doub 97 e n C7 H7 FAR sing 98 n n C8 C9 FAR sing 99 n n C8 C10 FAR sing 100 n n C9 C11 FAR sing 101 n n C9 H91 FAR sing 102 n n C9 H92 FAR sing 103 n n C11 C12 FAR sing 104 n n C11 H111 FAR sing 105 n n C11 H112 FAR sing 106 n n C12 C13 FAR doub 107 n n C12 H12 FAR sing 108 n n C13 C14 FAR sing 109 n n C13 C15 FAR sing 110 n n C14 H141 FAR sing 111 n n C14 H142 FAR sing 112 n n C14 H143 FAR sing 113 n n C15 H151 FAR sing 114 n n C15 H152 FAR sing 115 n n C15 H153 FAR sing 116 n n C4 H41 FAR sing 117 n n C4 H42 FAR sing 118 n n C4 H43 FAR sing 119 n n C10 H101 FAR sing 120 n n C10 H102 FAR sing 121 n n C10 H103 FAR sing 122 n n # _atom_sites.entry_id 4BG6 _atom_sites.fract_transf_matrix[1][1] 0.014128 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012298 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008994 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 PE4 A 1 1232 1232 PE4 PE4 . F 3 PE4 B 1 1231 1231 PE4 PE4 . G 3 PE4 B 1 1232 1232 PE4 PE4 . H 4 FAR Q 1 348 348 FAR FAR . I 4 FAR R 1 348 348 FAR FAR . J 5 HOH A 1 2001 2001 HOH HOH . J 5 HOH A 2 2002 2002 HOH HOH . J 5 HOH A 3 2003 2003 HOH HOH . J 5 HOH A 4 2004 2004 HOH HOH . J 5 HOH A 5 2005 2005 HOH HOH . J 5 HOH A 6 2006 2006 HOH HOH . J 5 HOH A 7 2007 2007 HOH HOH . J 5 HOH A 8 2008 2008 HOH HOH . J 5 HOH A 9 2009 2009 HOH HOH . J 5 HOH A 10 2010 2010 HOH HOH . J 5 HOH A 11 2011 2011 HOH HOH . J 5 HOH A 12 2012 2012 HOH HOH . J 5 HOH A 13 2013 2013 HOH HOH . J 5 HOH A 14 2014 2014 HOH HOH . J 5 HOH A 15 2015 2015 HOH HOH . J 5 HOH A 16 2016 2016 HOH HOH . J 5 HOH A 17 2017 2017 HOH HOH . J 5 HOH A 18 2018 2018 HOH HOH . J 5 HOH A 19 2019 2019 HOH HOH . J 5 HOH A 20 2020 2020 HOH HOH . J 5 HOH A 21 2021 2021 HOH HOH . J 5 HOH A 22 2022 2022 HOH HOH . J 5 HOH A 23 2023 2023 HOH HOH . J 5 HOH A 24 2024 2024 HOH HOH . J 5 HOH A 25 2025 2025 HOH HOH . J 5 HOH A 26 2026 2026 HOH HOH . J 5 HOH A 27 2027 2027 HOH HOH . J 5 HOH A 28 2028 2028 HOH HOH . J 5 HOH A 29 2029 2029 HOH HOH . J 5 HOH A 30 2030 2030 HOH HOH . J 5 HOH A 31 2031 2031 HOH HOH . J 5 HOH A 32 2032 2032 HOH HOH . J 5 HOH A 33 2033 2033 HOH HOH . J 5 HOH A 34 2034 2034 HOH HOH . J 5 HOH A 35 2035 2035 HOH HOH . J 5 HOH A 36 2036 2036 HOH HOH . J 5 HOH A 37 2037 2037 HOH HOH . J 5 HOH A 38 2038 2038 HOH HOH . K 5 HOH B 1 2001 2001 HOH HOH . K 5 HOH B 2 2002 2002 HOH HOH . K 5 HOH B 3 2003 2003 HOH HOH . K 5 HOH B 4 2004 2004 HOH HOH . K 5 HOH B 5 2005 2005 HOH HOH . K 5 HOH B 6 2006 2006 HOH HOH . K 5 HOH B 7 2007 2007 HOH HOH . K 5 HOH B 8 2008 2008 HOH HOH . K 5 HOH B 9 2009 2009 HOH HOH . K 5 HOH B 10 2010 2010 HOH HOH . K 5 HOH B 11 2011 2011 HOH HOH . K 5 HOH B 12 2012 2012 HOH HOH . K 5 HOH B 13 2013 2013 HOH HOH . K 5 HOH B 14 2014 2014 HOH HOH . K 5 HOH B 15 2015 2015 HOH HOH . K 5 HOH B 16 2016 2016 HOH HOH . K 5 HOH B 17 2017 2017 HOH HOH . K 5 HOH B 18 2018 2018 HOH HOH . K 5 HOH B 19 2019 2019 HOH HOH . K 5 HOH B 20 2020 2020 HOH HOH . K 5 HOH B 21 2021 2021 HOH HOH . K 5 HOH B 22 2022 2022 HOH HOH . K 5 HOH B 23 2023 2023 HOH HOH . K 5 HOH B 24 2024 2024 HOH HOH . K 5 HOH B 25 2025 2025 HOH HOH . K 5 HOH B 26 2026 2026 HOH HOH . K 5 HOH B 27 2027 2027 HOH HOH . K 5 HOH B 28 2028 2028 HOH HOH . K 5 HOH B 29 2029 2029 HOH HOH . K 5 HOH B 30 2030 2030 HOH HOH . K 5 HOH B 31 2031 2031 HOH HOH . K 5 HOH B 32 2032 2032 HOH HOH . K 5 HOH B 33 2033 2033 HOH HOH . K 5 HOH B 34 2034 2034 HOH HOH . K 5 HOH B 35 2035 2035 HOH HOH . K 5 HOH B 36 2036 2036 HOH HOH . K 5 HOH B 37 2037 2037 HOH HOH . K 5 HOH B 38 2038 2038 HOH HOH . K 5 HOH B 39 2039 2039 HOH HOH . K 5 HOH B 40 2040 2040 HOH HOH . K 5 HOH B 41 2041 2041 HOH HOH . L 5 HOH Q 1 2001 2001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FAR . . . H 4 -14.317 6.32 12.615 1 108.15 ? C1 FAR 348 Q 1 HETATM 2 C C2 FAR . . . H 4 -13.805 6.988 13.869 1 103.85 ? C2 FAR 348 Q 1 HETATM 3 C C3 FAR . . . H 4 -13.626 6.278 14.99 1 109.93 ? C3 FAR 348 Q 1 HETATM 4 C C5 FAR . . . H 4 -13.118 6.948 16.243 1 110.12 ? C5 FAR 348 Q 1 HETATM 5 C C6 FAR . . . H 4 -14.166 6.749 17.329 1 122.21 ? C6 FAR 348 Q 1 HETATM 6 C C7 FAR . . . H 4 -13.536 6.105 18.539 1 116.67 ? C7 FAR 348 Q 1 HETATM 7 C C8 FAR . . . H 4 -14.173 5.098 19.15 1 107.22 ? C8 FAR 348 Q 1 HETATM 8 C C9 FAR . . . H 4 -15.499 4.617 18.608 1 115.74 ? C9 FAR 348 Q 1 HETATM 9 C C4 FAR . . . H 4 -13.936 4.81 15.004 1 112.73 ? C4 FAR 348 Q 1 HETATM 10 C C10 FAR . . . H 4 -13.569 4.442 20.355 1 91.7 ? C10 FAR 348 Q 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #