data_4BGD # _model_server_result.job_id tgWXiHUrMQCHZk3GCf7PDw _model_server_result.datetime_utc '2024-11-23 21:28:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bgd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":3166}' # _entry.id 4BGD # _exptl.entry_id 4BGD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.489 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BGD _cell.length_a 107.64 _cell.length_b 178.64 _cell.length_c 180.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BGD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F O HOH . A HOH 3007 1_555 D MG MG . A MG 3165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc2 F O HOH . A HOH 3008 1_555 D MG MG . A MG 3165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc3 F O HOH . A HOH 3009 1_555 D MG MG . A MG 3165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc4 F O HOH . A HOH 3011 1_555 D MG MG . A MG 3165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc5 F O HOH . A HOH 3012 1_555 D MG MG . A MG 3165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc6 C O3B ADP . A ADP 3164 1_555 D MG MG . A MG 3165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? # _chem_comp.formula 'C18 H38 O9' _chem_comp.formula_weight 398.489 _chem_comp.id PE5 _chem_comp.mon_nstd_flag . _chem_comp.name 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL;POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C48 C50 PE5 sing 281 n n C48 H481 PE5 sing 282 n n C48 H482 PE5 sing 283 n n C48 H483 PE5 sing 284 n n C50 O1 PE5 sing 285 n n C50 H501 PE5 sing 286 n n C50 H502 PE5 sing 287 n n O1 C1 PE5 sing 288 n n C1 C2 PE5 sing 289 n n C1 H11 PE5 sing 290 n n C1 H12 PE5 sing 291 n n C2 O2 PE5 sing 292 n n C2 H21 PE5 sing 293 n n C2 H22 PE5 sing 294 n n O2 C3 PE5 sing 295 n n C3 C4 PE5 sing 296 n n C3 H31 PE5 sing 297 n n C3 H32 PE5 sing 298 n n C4 O3 PE5 sing 299 n n C4 H41 PE5 sing 300 n n C4 H42 PE5 sing 301 n n O3 C5 PE5 sing 302 n n C5 C6 PE5 sing 303 n n C5 H51 PE5 sing 304 n n C5 H52A PE5 sing 305 n n C6 O4 PE5 sing 306 n n C6 H61 PE5 sing 307 n n C6 H62 PE5 sing 308 n n O4 C7 PE5 sing 309 n n C7 C8 PE5 sing 310 n n C7 H71 PE5 sing 311 n n C7 H72 PE5 sing 312 n n C8 O5 PE5 sing 313 n n C8 H81 PE5 sing 314 n n C8 H82 PE5 sing 315 n n O5 C9 PE5 sing 316 n n C9 C10 PE5 sing 317 n n C9 H91 PE5 sing 318 n n C9 H92 PE5 sing 319 n n C10 O6 PE5 sing 320 n n C10 H101 PE5 sing 321 n n C10 H102 PE5 sing 322 n n O6 C11 PE5 sing 323 n n C11 C12 PE5 sing 324 n n C11 H111 PE5 sing 325 n n C11 H112 PE5 sing 326 n n C12 O7 PE5 sing 327 n n C12 H121 PE5 sing 328 n n C12 H122 PE5 sing 329 n n O7 C13 PE5 sing 330 n n C13 C14 PE5 sing 331 n n C13 H131 PE5 sing 332 n n C13 H132 PE5 sing 333 n n C14 O8 PE5 sing 334 n n C14 H141 PE5 sing 335 n n C14 H142 PE5 sing 336 n n O8 C15 PE5 sing 337 n n C15 C16 PE5 sing 338 n n C15 H151 PE5 sing 339 n n C15 H152 PE5 sing 340 n n C16 O52 PE5 sing 341 n n C16 H161 PE5 sing 342 n n C16 H162 PE5 sing 343 n n O52 H52 PE5 sing 344 n n # _atom_sites.entry_id 4BGD _atom_sites.fract_transf_matrix[1][1] 0.00929 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005598 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005543 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ADP A 1 3164 3164 ADP ADP . D 4 MG A 1 3165 3165 MG MG . E 5 PE5 A 1 3166 3166 PE5 PE5 . F 6 HOH A 1 3001 3001 HOH HOH . F 6 HOH A 2 3002 3002 HOH HOH . F 6 HOH A 3 3003 3003 HOH HOH . F 6 HOH A 4 3004 3004 HOH HOH . F 6 HOH A 5 3005 3005 HOH HOH . F 6 HOH A 6 3006 3006 HOH HOH . F 6 HOH A 7 3007 3007 HOH HOH . F 6 HOH A 8 3008 3008 HOH HOH . F 6 HOH A 9 3009 3009 HOH HOH . F 6 HOH A 10 3010 3010 HOH HOH . F 6 HOH A 11 3011 3011 HOH HOH . F 6 HOH A 12 3012 3012 HOH HOH . F 6 HOH A 13 3013 3013 HOH HOH . F 6 HOH A 14 3014 3014 HOH HOH . G 6 HOH C 1 3001 3001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C48 PE5 . . . E 5 50.79 49.244 25.173 1 131.95 ? C48 PE5 3166 A 1 HETATM 2 C C50 PE5 . . . E 5 50.79 49.724 26.618 1 140.81 ? C50 PE5 3166 A 1 HETATM 3 O O1 PE5 . . . E 5 49.537 49.46 27.283 1 151.09 ? O1 PE5 3166 A 1 HETATM 4 C C1 PE5 . . . E 5 49.416 48.173 27.922 1 154.92 ? C1 PE5 3166 A 1 HETATM 5 C C2 PE5 . . . E 5 48.319 48.159 29.003 1 141.57 ? C2 PE5 3166 A 1 HETATM 6 O O2 PE5 . . . E 5 47.886 46.809 29.267 1 132.25 ? O2 PE5 3166 A 1 HETATM 7 C C3 PE5 . . . E 5 48.384 46.175 30.47 1 122.73 ? C3 PE5 3166 A 1 HETATM 8 C C4 PE5 . . . E 5 49.689 45.394 30.262 1 112.34 ? C4 PE5 3166 A 1 HETATM 9 O O3 PE5 . . . E 5 50.239 44.967 31.519 1 114 ? O3 PE5 3166 A 1 HETATM 10 C C5 PE5 . . . E 5 51.328 45.757 32.016 1 114.77 ? C5 PE5 3166 A 1 HETATM 11 C C6 PE5 . . . E 5 51.844 45.256 33.373 1 115.63 ? C6 PE5 3166 A 1 HETATM 12 O O4 PE5 . . . E 5 52.334 46.266 34.266 1 127.43 ? O4 PE5 3166 A 1 HETATM 13 C C7 PE5 . . . E 5 51.489 46.618 35.372 1 137.74 ? C7 PE5 3166 A 1 HETATM 14 C C8 PE5 . . . E 5 50.129 47.137 34.878 1 147.89 ? C8 PE5 3166 A 1 HETATM 15 O O5 PE5 . . . E 5 49.4 47.867 35.877 1 166.02 ? O5 PE5 3166 A 1 HETATM 16 C C9 PE5 . . . E 5 49.285 47.268 37.181 1 173.69 ? C9 PE5 3166 A 1 HETATM 17 C C10 PE5 . . . E 5 47.906 47.51 37.809 1 169.92 ? C10 PE5 3166 A 1 HETATM 18 O O6 PE5 . . . E 5 47.929 47.279 39.238 1 164.52 ? O6 PE5 3166 A 1 HETATM 19 C C11 PE5 . . . E 5 47.401 48.351 40.041 1 158.15 ? C11 PE5 3166 A 1 HETATM 20 C C12 PE5 . . . E 5 46.541 47.821 41.184 1 159.23 ? C12 PE5 3166 A 1 HETATM 21 O O7 PE5 . . . E 5 45.157 48.052 40.884 1 171.49 ? O7 PE5 3166 A 1 HETATM 22 C C13 PE5 . . . E 5 44.301 48.003 42.032 1 159.16 ? C13 PE5 3166 A 1 HETATM 23 C C14 PE5 . . . E 5 42.802 48.078 41.686 1 146.73 ? C14 PE5 3166 A 1 HETATM 24 O O8 PE5 . . . E 5 41.965 47.65 42.77 1 136.94 ? O8 PE5 3166 A 1 HETATM 25 C C15 PE5 . . . E 5 42.121 48.405 43.981 1 149.9 ? C15 PE5 3166 A 1 HETATM 26 C C16 PE5 . . . E 5 43.261 47.827 44.832 1 155.04 ? C16 PE5 3166 A 1 HETATM 27 O O52 PE5 . . . E 5 43.093 48.087 46.227 1 160.7 ? O52 PE5 3166 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #