data_4BGY # _model_server_result.job_id jxLiql6qAap0xL1pCbWsNQ _model_server_result.datetime_utc '2024-11-22 19:20:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bgy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1165}' # _entry.id 4BGY # _exptl.entry_id 4BGY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4BGY _cell.length_a 101.403 _cell.length_b 101.403 _cell.length_c 449.997 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BGY _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -50.7015 87.817574 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -101.403 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 2 1 GAL NAG C1 O1 . O4 HO4 . sing 3 ? 4 3 2 SIA GAL C2 O2 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 1322 NAG 3 n C NAG 2 C 2 NAG A 1323 NAG 3 n D NAG 1 D 1 NAG A 1324 NAG 3 n D NAG 2 D 2 NAG A 1325 NAG 4 n E NAG 1 E 1 NAG A 1328 NAG 4 n E GAL 2 E 2 GAL A 1327 GAL 4 n E SIA 3 E 3 SIA A 1326 SIA 3 n F NAG 1 F 1 NAG B 1163 NAG 3 n F NAG 2 F 2 NAG B 1164 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf2 A SG CYS 42 A CYS 42 1_555 A SG CYS 274 A CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf3 A SG CYS 55 A CYS 55 1_555 A SG CYS 67 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 90 A CYS 90 1_555 A SG CYS 135 A CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 A SG CYS 278 A CYS 278 1_555 A SG CYS 302 A CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf6 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? covale ? covale1 A ND2 ASN 23 A ASN 23 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 A ND2 ASN 165 A ASN 165 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 B ND2 ASN 154 B ASN 154 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale4 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale6 E O4 NAG . E NAG 1 1_555 E C1 GAL . E GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.418 ? covale ? covale7 E O3 GAL . E GAL 2 1_555 E C2 SIA . E SIA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale8 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 4BGY _atom_sites.fract_transf_matrix[1][1] 0.009862 _atom_sites.fract_transf_matrix[1][2] 0.005694 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011387 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002222 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 EPE B 1 1165 1165 EPE EPE . H 6 HOH A 1 2001 2001 HOH HOH . H 6 HOH A 2 2002 2002 HOH HOH . H 6 HOH A 3 2003 2003 HOH HOH . H 6 HOH A 4 2004 2004 HOH HOH . H 6 HOH A 5 2005 2005 HOH HOH . H 6 HOH A 6 2006 2006 HOH HOH . H 6 HOH A 7 2007 2007 HOH HOH . H 6 HOH A 8 2008 2008 HOH HOH . H 6 HOH A 9 2009 2009 HOH HOH . H 6 HOH A 10 2010 2010 HOH HOH . H 6 HOH A 11 2011 2011 HOH HOH . H 6 HOH A 12 2012 2012 HOH HOH . H 6 HOH A 13 2013 2013 HOH HOH . H 6 HOH A 14 2014 2014 HOH HOH . H 6 HOH A 15 2015 2015 HOH HOH . H 6 HOH A 16 2016 2016 HOH HOH . H 6 HOH A 17 2017 2017 HOH HOH . H 6 HOH A 18 2018 2018 HOH HOH . H 6 HOH A 19 2019 2019 HOH HOH . H 6 HOH A 20 2020 2020 HOH HOH . H 6 HOH A 21 2021 2021 HOH HOH . H 6 HOH A 22 2022 2022 HOH HOH . H 6 HOH A 23 2023 2023 HOH HOH . H 6 HOH A 24 2024 2024 HOH HOH . H 6 HOH A 25 2025 2025 HOH HOH . H 6 HOH A 26 2026 2026 HOH HOH . H 6 HOH A 27 2027 2027 HOH HOH . H 6 HOH A 28 2028 2028 HOH HOH . H 6 HOH A 29 2029 2029 HOH HOH . H 6 HOH A 30 2030 2030 HOH HOH . H 6 HOH A 31 2031 2031 HOH HOH . H 6 HOH A 32 2032 2032 HOH HOH . H 6 HOH A 33 2033 2033 HOH HOH . H 6 HOH A 34 2034 2034 HOH HOH . H 6 HOH A 35 2035 2035 HOH HOH . H 6 HOH A 36 2036 2036 HOH HOH . H 6 HOH A 37 2037 2037 HOH HOH . H 6 HOH A 38 2038 2038 HOH HOH . H 6 HOH A 39 2039 2039 HOH HOH . H 6 HOH A 40 2040 2040 HOH HOH . H 6 HOH A 41 2041 2041 HOH HOH . H 6 HOH A 42 2042 2042 HOH HOH . H 6 HOH A 43 2043 2043 HOH HOH . H 6 HOH A 44 2044 2044 HOH HOH . H 6 HOH A 45 2045 2045 HOH HOH . H 6 HOH A 46 2046 2046 HOH HOH . H 6 HOH A 47 2047 2047 HOH HOH . H 6 HOH A 48 2048 2048 HOH HOH . H 6 HOH A 49 2049 2049 HOH HOH . H 6 HOH A 50 2050 2050 HOH HOH . H 6 HOH A 51 2051 2051 HOH HOH . H 6 HOH A 52 2052 2052 HOH HOH . H 6 HOH A 53 2053 2053 HOH HOH . H 6 HOH A 54 2054 2054 HOH HOH . H 6 HOH A 55 2055 2055 HOH HOH . H 6 HOH A 56 2056 2056 HOH HOH . H 6 HOH A 57 2057 2057 HOH HOH . H 6 HOH A 58 2058 2058 HOH HOH . H 6 HOH A 59 2059 2059 HOH HOH . H 6 HOH A 60 2060 2060 HOH HOH . H 6 HOH A 61 2061 2061 HOH HOH . H 6 HOH A 62 2062 2062 HOH HOH . H 6 HOH A 63 2063 2063 HOH HOH . H 6 HOH A 64 2064 2064 HOH HOH . H 6 HOH A 65 2065 2065 HOH HOH . H 6 HOH A 66 2066 2066 HOH HOH . H 6 HOH A 67 2067 2067 HOH HOH . H 6 HOH A 68 2068 2068 HOH HOH . H 6 HOH A 69 2069 2069 HOH HOH . H 6 HOH A 70 2070 2070 HOH HOH . H 6 HOH A 71 2071 2071 HOH HOH . H 6 HOH A 72 2072 2072 HOH HOH . H 6 HOH A 73 2073 2073 HOH HOH . I 6 HOH B 1 2001 2001 HOH HOH . I 6 HOH B 2 2002 2002 HOH HOH . I 6 HOH B 3 2003 2003 HOH HOH . I 6 HOH B 4 2004 2004 HOH HOH . I 6 HOH B 5 2005 2005 HOH HOH . I 6 HOH B 6 2006 2006 HOH HOH . I 6 HOH B 7 2007 2007 HOH HOH . I 6 HOH B 8 2008 2008 HOH HOH . I 6 HOH B 9 2009 2009 HOH HOH . I 6 HOH B 10 2010 2010 HOH HOH . I 6 HOH B 11 2011 2011 HOH HOH . I 6 HOH B 12 2012 2012 HOH HOH . I 6 HOH B 13 2013 2013 HOH HOH . I 6 HOH B 14 2014 2014 HOH HOH . I 6 HOH B 15 2015 2015 HOH HOH . I 6 HOH B 16 2016 2016 HOH HOH . I 6 HOH B 17 2017 2017 HOH HOH . I 6 HOH B 18 2018 2018 HOH HOH . I 6 HOH B 19 2019 2019 HOH HOH . I 6 HOH B 20 2020 2020 HOH HOH . I 6 HOH B 21 2021 2021 HOH HOH . I 6 HOH B 22 2022 2022 HOH HOH . I 6 HOH B 23 2023 2023 HOH HOH . I 6 HOH B 24 2024 2024 HOH HOH . I 6 HOH B 25 2025 2025 HOH HOH . I 6 HOH B 26 2026 2026 HOH HOH . I 6 HOH B 27 2027 2027 HOH HOH . I 6 HOH B 28 2028 2028 HOH HOH . I 6 HOH B 29 2029 2029 HOH HOH . I 6 HOH B 30 2030 2030 HOH HOH . I 6 HOH B 31 2031 2031 HOH HOH . I 6 HOH B 32 2032 2032 HOH HOH . I 6 HOH B 33 2033 2033 HOH HOH . I 6 HOH B 34 2034 2034 HOH HOH . I 6 HOH B 35 2035 2035 HOH HOH . I 6 HOH B 36 2036 2036 HOH HOH . I 6 HOH B 37 2037 2037 HOH HOH . I 6 HOH B 38 2038 2038 HOH HOH . I 6 HOH B 39 2039 2039 HOH HOH . I 6 HOH B 40 2040 2040 HOH HOH . I 6 HOH B 41 2041 2041 HOH HOH . I 6 HOH B 42 2042 2042 HOH HOH . I 6 HOH B 43 2043 2043 HOH HOH . I 6 HOH B 44 2044 2044 HOH HOH . I 6 HOH B 45 2045 2045 HOH HOH . I 6 HOH B 46 2046 2046 HOH HOH . I 6 HOH B 47 2047 2047 HOH HOH . I 6 HOH B 48 2048 2048 HOH HOH . I 6 HOH B 49 2049 2049 HOH HOH . I 6 HOH B 50 2050 2050 HOH HOH . I 6 HOH B 51 2051 2051 HOH HOH . I 6 HOH B 52 2052 2052 HOH HOH . I 6 HOH B 53 2053 2053 HOH HOH . I 6 HOH B 54 2054 2054 HOH HOH . I 6 HOH B 55 2055 2055 HOH HOH . I 6 HOH B 56 2056 2056 HOH HOH . I 6 HOH B 57 2057 2057 HOH HOH . I 6 HOH B 58 2058 2058 HOH HOH . I 6 HOH B 59 2059 2059 HOH HOH . I 6 HOH B 60 2060 2060 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . G 5 -30.932 29.272 3.604 1 79.8 ? N1 EPE 1165 B 1 HETATM 2 C C2 EPE . . . G 5 -31.01 28.629 2.312 1 82.49 ? C2 EPE 1165 B 1 HETATM 3 C C3 EPE . . . G 5 -31.899 27.429 2.569 1 82.2 ? C3 EPE 1165 B 1 HETATM 4 N N4 EPE . . . G 5 -31.14 26.52 3.423 1 80.3 ? N4 EPE 1165 B 1 HETATM 5 C C5 EPE . . . G 5 -30.234 27.079 4.429 1 84.98 ? C5 EPE 1165 B 1 HETATM 6 C C6 EPE . . . G 5 -30.763 28.474 4.815 1 84.75 ? C6 EPE 1165 B 1 HETATM 7 C C7 EPE . . . G 5 -31.303 25.072 3.294 1 80.81 ? C7 EPE 1165 B 1 HETATM 8 C C8 EPE . . . G 5 -31.163 24.632 1.828 1 82.91 ? C8 EPE 1165 B 1 HETATM 9 O O8 EPE . . . G 5 -32.436 24.198 1.309 1 81.88 ? O8 EPE 1165 B 1 HETATM 10 C C9 EPE . . . G 5 -31.047 30.709 3.681 1 86.6 ? C9 EPE 1165 B 1 HETATM 11 C C10 EPE . . . G 5 -29.845 31.269 2.935 1 97.09 ? C10 EPE 1165 B 1 HETATM 12 S S EPE . . . G 5 -28.473 31.192 3.876 1 112.87 ? S EPE 1165 B 1 HETATM 13 O O1S EPE . . . G 5 -27.264 31.371 3.033 1 114.38 ? O1S EPE 1165 B 1 HETATM 14 O O2S EPE . . . G 5 -28.359 29.898 4.593 1 113.56 ? O2S EPE 1165 B 1 HETATM 15 O O3S EPE . . . G 5 -28.525 32.303 4.855 1 117.75 ? O3S EPE 1165 B 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #