data_4BIU
#
_model_server_result.job_id            ckD2odMs3K2VL7yJt1q-Kw 
_model_server_result.datetime_utc      '2024-11-15 05:04:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4biu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":501}' 
#
_entry.id    4BIU 
#
_exptl.entry_id    4BIU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4BIU 
_cell.length_a            143.274 
_cell.length_b            191.697 
_cell.length_c            205.013 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4BIU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
C,D,G,H,I 1 1 
A,B 2 1 
E,F,J,K,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 J N N 
? 2 K N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     4BIU 
_atom_sites.fract_transf_matrix[1][1]    0.00698 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005217 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004878 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 ADP C 1 501 501 ADP ADP . 
H 3 SO4 D 1 1456 1456 SO4 SO4 . 
I 3 SO4 D 1 1457 1457 SO4 SO4 . 
J 2 ADP E 1 501 501 ADP ADP . 
K 2 ADP F 1 501 501 ADP ADP . 
L 3 SO4 F 1 1455 1455 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . G 2 47.476 29.766 25.009 1 221.44 ? PB ADP 501 C 1 
HETATM 2 O O1B ADP . . . G 2 48.695 29.668 24.079 1 220.58 ? O1B ADP 501 C 1 
HETATM 3 O O2B ADP . . . G 2 46.837 31.154 24.866 1 222.57 ? O2B ADP 501 C 1 
HETATM 4 O O3B ADP . . . G 2 46.475 28.738 24.613 1 226.31 ? O3B ADP 501 C 1 
HETATM 5 P PA ADP . . . G 2 49.225 28.807 27.169 1 209.75 ? PA ADP 501 C 1 
HETATM 6 O O1A ADP . . . G 2 50.308 28.663 26.073 1 211.9 ? O1A ADP 501 C 1 
HETATM 7 O O2A ADP . . . G 2 48.869 27.465 27.643 1 203.06 ? O2A ADP 501 C 1 
HETATM 8 O O3A ADP . . . G 2 47.948 29.52 26.518 1 190.73 ? O3A ADP 501 C 1 
HETATM 9 O O5' ADP . . . G 2 49.737 29.658 28.404 1 219.53 ? O5' ADP 501 C 1 
HETATM 10 C C5' ADP . . . G 2 48.792 30.093 29.377 1 215.7 ? C5' ADP 501 C 1 
HETATM 11 C C4' ADP . . . G 2 48.791 31.592 29.546 1 213.59 ? C4' ADP 501 C 1 
HETATM 12 O O4' ADP . . . G 2 50.102 31.964 29.982 1 207.6 ? O4' ADP 501 C 1 
HETATM 13 C C3' ADP . . . G 2 48.543 32.431 28.291 1 218.09 ? C3' ADP 501 C 1 
HETATM 14 O O3' ADP . . . G 2 47.143 32.697 28.152 1 220.26 ? O3' ADP 501 C 1 
HETATM 15 C C2' ADP . . . G 2 49.354 33.714 28.56 1 216.47 ? C2' ADP 501 C 1 
HETATM 16 O O2' ADP . . . G 2 48.549 34.803 28.994 1 215.19 ? O2' ADP 501 C 1 
HETATM 17 C C1' ADP . . . G 2 50.373 33.294 29.619 1 207.82 ? C1' ADP 501 C 1 
HETATM 18 N N9 ADP . . . G 2 51.762 33.342 29.165 1 196 ? N9 ADP 501 C 1 
HETATM 19 C C8 ADP . . . G 2 52.513 32.284 28.714 1 184.93 ? C8 ADP 501 C 1 
HETATM 20 N N7 ADP . . . G 2 53.727 32.613 28.354 1 192.87 ? N7 ADP 501 C 1 
HETATM 21 C C5 ADP . . . G 2 53.773 33.971 28.567 1 204 ? C5 ADP 501 C 1 
HETATM 22 C C6 ADP . . . G 2 54.794 34.922 28.38 1 209.23 ? C6 ADP 501 C 1 
HETATM 23 N N6 ADP . . . G 2 55.998 34.679 27.847 1 209.86 ? N6 ADP 501 C 1 
HETATM 24 N N1 ADP . . . G 2 54.535 36.188 28.724 1 214.43 ? N1 ADP 501 C 1 
HETATM 25 C C2 ADP . . . G 2 53.341 36.487 29.226 1 221.97 ? C2 ADP 501 C 1 
HETATM 26 N N3 ADP . . . G 2 52.288 35.699 29.448 1 222.65 ? N3 ADP 501 C 1 
HETATM 27 C C4 ADP . . . G 2 52.584 34.449 29.079 1 209.29 ? C4 ADP 501 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           243 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#