data_4BJ3 # _model_server_result.job_id nq8tzpKSTLUdvCIH6o2nnw _model_server_result.datetime_utc '2024-11-22 12:15:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bj3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":804}' # _entry.id 4BJ3 # _exptl.entry_id 4BJ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 209.24 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4BJ3 _cell.length_a 83.004 _cell.length_b 83.004 _cell.length_c 175.256 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BJ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C PRO 2 C PRO 3 1_555 C N HYP 3 C HYP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 C C HYP 3 C HYP 4 1_555 C N GLY 4 C GLY 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 C C PRO 5 C PRO 6 1_555 C N HYP 6 C HYP 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 C C HYP 6 C HYP 7 1_555 C N GLY 7 C GLY 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 C C PHE 8 C PHE 9 1_555 C N HYP 9 C HYP 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 C C HYP 9 C HYP 10 1_555 C N GLY 10 C GLY 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 C C PRO 14 C PRO 15 1_555 C N HYP 15 C HYP 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 C C HYP 15 C HYP 16 1_555 C N GLY 16 C GLY 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 C C PRO 17 C PRO 18 1_555 C N HYP 18 C HYP 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 D C PRO 2 D PRO 3 1_555 D N HYP 3 D HYP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 D C HYP 3 D HYP 4 1_555 D N GLY 4 D GLY 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 D C PRO 5 D PRO 6 1_555 D N HYP 6 D HYP 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 D C HYP 6 D HYP 7 1_555 D N GLY 7 D GLY 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 D C PHE 8 D PHE 9 1_555 D N HYP 9 D HYP 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 D C HYP 9 D HYP 10 1_555 D N GLY 10 D GLY 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 D C PRO 14 D PRO 15 1_555 D N HYP 15 D HYP 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale17 D C HYP 15 D HYP 16 1_555 D N GLY 16 D GLY 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale18 D C PRO 17 D PRO 18 1_555 D N HYP 18 D HYP 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale19 E C PRO 2 E PRO 3 1_555 E N HYP 3 E HYP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale20 E C HYP 3 E HYP 4 1_555 E N GLY 4 E GLY 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale21 E C PRO 5 E PRO 6 1_555 E N HYP 6 E HYP 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale22 E C HYP 6 E HYP 7 1_555 E N GLY 7 E GLY 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale23 E C PHE 8 E PHE 9 1_555 E N HYP 9 E HYP 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale24 E C HYP 9 E HYP 10 1_555 E N GLY 10 E GLY 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale25 E C PRO 14 E PRO 15 1_555 E N HYP 15 E HYP 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale26 E C HYP 15 E HYP 16 1_555 E N GLY 16 E GLY 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale27 E C PRO 17 E PRO 18 1_555 E N HYP 18 E HYP 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OG SER 33 A SER 153 1_555 F MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc2 A OG SER 35 A SER 155 1_555 F MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc3 A OG1 THR 101 A THR 221 1_555 F MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc4 F MG MG . A MG 801 1_555 E OE2 GLU 11 E GLU 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc5 B OG SER 33 B SER 153 1_555 I MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc6 B OG SER 35 B SER 155 1_555 I MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc7 B OG1 THR 101 B THR 221 1_555 I MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc8 I MG MG . B MG 802 1_555 C OE2 GLU 11 C GLU 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? # _chem_comp.formula 'C8 H19 N O5' _chem_comp.formula_weight 209.24 _chem_comp.id BTB _chem_comp.mon_nstd_flag . _chem_comp.name 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'BIS-TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BTB sing 70 n n C1 C2 BTB sing 71 n n C1 H11 BTB sing 72 n n C1 H12 BTB sing 73 n n O1 HO1 BTB sing 74 n n C2 C3 BTB sing 75 n n C2 C4 BTB sing 76 n n C2 N BTB sing 77 n n C3 O3 BTB sing 78 n n C3 H31 BTB sing 79 n n C3 H32 BTB sing 80 n n O3 HO3 BTB sing 81 n n C4 O4 BTB sing 82 n n C4 H41 BTB sing 83 n n C4 H42 BTB sing 84 n n O4 HO4 BTB sing 85 n n N C5 BTB sing 86 n n N C7 BTB sing 87 n n C5 C6 BTB sing 88 n n C5 H51 BTB sing 89 n n C5 H52 BTB sing 90 n n C6 O6 BTB sing 91 n n C6 H61 BTB sing 92 n n C6 H62 BTB sing 93 n n O6 HO6 BTB sing 94 n n C7 C8 BTB sing 95 n n C7 H71 BTB sing 96 n n C7 H72 BTB sing 97 n n C8 O8 BTB sing 98 n n C8 H81 BTB sing 99 n n C8 H82 BTB sing 100 n n O8 HO8 BTB sing 101 n n # _atom_sites.entry_id 4BJ3 _atom_sites.fract_transf_matrix[1][1] 0.012048 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012048 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005706 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 MG A 1 801 801 MG MG . G 4 CL A 1 803 803 CL CL . H 5 BTB A 1 804 804 BTB BTB . I 3 MG B 1 802 802 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BTB . . . H 5 115.226 46.976 29.95 1 90.94 ? C1 BTB 804 A 1 HETATM 2 O O1 BTB . . . H 5 114.466 47.212 28.756 1 97.92 ? O1 BTB 804 A 1 HETATM 3 C C2 BTB . . . H 5 115.76 45.547 30.007 1 89.98 ? C2 BTB 804 A 1 HETATM 4 C C3 BTB . . . H 5 117.263 45.606 30.213 1 88.75 ? C3 BTB 804 A 1 HETATM 5 O O3 BTB . . . H 5 117.861 44.375 29.786 1 90.65 ? O3 BTB 804 A 1 HETATM 6 C C4 BTB . . . H 5 115.459 44.808 28.7 1 89.65 ? C4 BTB 804 A 1 HETATM 7 O O4 BTB . . . H 5 114.192 45.214 28.137 1 92.12 ? O4 BTB 804 A 1 HETATM 8 N N BTB . . . H 5 115.207 44.807 31.177 1 87.28 ? N BTB 804 A 1 HETATM 9 C C5 BTB . . . H 5 114.635 45.697 32.203 1 81.14 ? C5 BTB 804 A 1 HETATM 10 C C6 BTB . . . H 5 115.641 45.93 33.326 1 75.92 ? C6 BTB 804 A 1 HETATM 11 O O6 BTB . . . H 5 116.44 47.072 33.009 1 74.94 ? O6 BTB 804 A 1 HETATM 12 C C7 BTB . . . H 5 114.171 43.823 30.824 1 81 ? C7 BTB 804 A 1 HETATM 13 C C8 BTB . . . H 5 114.693 42.431 31.163 1 80.14 ? C8 BTB 804 A 1 HETATM 14 O O8 BTB . . . H 5 116.043 42.336 30.69 1 83.51 ? O8 BTB 804 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #