data_4BJK # _model_server_result.job_id 1sDJbdYZUTEOiRowV86B_A _model_server_result.datetime_utc '2024-10-13 09:13:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4bjk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1460}' # _entry.id 4BJK # _exptl.entry_id 4BJK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 496.507 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,3'-difluoro-N-[(2S)-3-(1H-indol-3-yl)-1-oxo-1-(pyridin-4-ylamino)propan-2-yl]biphenyl-4-carboxamide" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 132.47 _cell.angle_gamma 90 _cell.entry_id 4BJK _cell.length_a 199.291 _cell.length_b 114.671 _cell.length_c 136.221 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4BJK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,M 1 1 B,G,H,N 2 1 C,I,J,O 3 1 D,K,L,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 402 A CYS 422 1_555 E FE HEM . A HEM 1450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc2 E FE HEM . A HEM 1450 1_555 F N1 18I . A 18I 1460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? metalc ? metalc3 B SG CYS 402 B CYS 422 1_555 G FE HEM . B HEM 1450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc4 G FE HEM . B HEM 1450 1_555 H N1 18I . B 18I 1460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc5 C SG CYS 402 C CYS 422 1_555 I FE HEM . C HEM 1450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc6 I FE HEM . C HEM 1450 1_555 J C3 18I . C 18I 1460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc7 I FE HEM . C HEM 1450 1_555 J N1 18I . C 18I 1460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.623 ? metalc ? metalc8 D SG CYS 402 D CYS 422 1_555 K FE HEM . D HEM 1450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc9 K FE HEM . D HEM 1450 1_555 L N1 18I . D 18I 1460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? # _chem_comp.formula 'C29 H22 F2 N4 O2' _chem_comp.formula_weight 496.507 _chem_comp.id 18I _chem_comp.mon_nstd_flag . _chem_comp.name "3,3'-difluoro-N-[(2S)-3-(1H-indol-3-yl)-1-oxo-1-(pyridin-4-ylamino)propan-2-yl]biphenyl-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 18I doub 1 n y C1 C5 18I sing 2 n y F1 C17 18I sing 3 n n N1 C2 18I sing 4 n y N1 C3 18I doub 5 n y O1 C8 18I doub 6 n n F2 C20 18I sing 7 n n N2 C5 18I sing 8 n n N2 C6 18I sing 9 n n O2 C6 18I doub 10 n n C3 C4 18I sing 11 n y N3 C7 18I sing 12 n n N3 C8 18I sing 13 n n C4 C5 18I doub 14 n y N4 C23 18I sing 15 n y N4 C24 18I sing 16 n y C6 C7 18I sing 17 n n C7 C21 18I sing 18 n n C8 C9 18I sing 19 n n C9 C10 18I doub 20 n y C9 C20 18I sing 21 n y C10 C11 18I sing 22 n y C11 C12 18I doub 23 n y C12 C13 18I sing 24 n n C12 C19 18I sing 25 n y C13 C14 18I doub 26 n y C13 C18 18I sing 27 n y C14 C15 18I sing 28 n y C15 C16 18I doub 29 n y C16 C17 18I sing 30 n y C17 C18 18I doub 31 n y C19 C20 18I doub 32 n y C21 C22 18I sing 33 n n C22 C23 18I doub 34 n y C22 C29 18I sing 35 n y C24 C25 18I doub 36 n y C24 C29 18I sing 37 n y C25 C26 18I sing 38 n y C26 C27 18I doub 39 n y C27 C28 18I sing 40 n y C28 C29 18I doub 41 n y C1 H1 18I sing 42 n n C2 H2 18I sing 43 n n N2 HN2 18I sing 44 n n C3 H3 18I sing 45 n n N3 HN3 18I sing 46 n n C4 H4 18I sing 47 n n N4 HN4 18I sing 48 n n C7 H7 18I sing 49 n n C10 H10 18I sing 50 n n C11 H11 18I sing 51 n n C14 H14 18I sing 52 n n C15 H15 18I sing 53 n n C16 H16 18I sing 54 n n C18 H18 18I sing 55 n n C19 H19 18I sing 56 n n C21 H21 18I sing 57 n n C21 H21A 18I sing 58 n n C23 H23 18I sing 59 n n C25 H25 18I sing 60 n n C26 H26 18I sing 61 n n C27 H27 18I sing 62 n n C28 H28 18I sing 63 n n # _atom_sites.entry_id 4BJK _atom_sites.fract_transf_matrix[1][1] 0.005018 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004593 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008721 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009952 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 1450 1450 HEM HEM . F 3 18I A 1 1460 1460 18I 18I . G 2 HEM B 1 1450 1450 HEM HEM . H 3 18I B 1 1460 1460 18I 18I . I 2 HEM C 1 1450 1450 HEM HEM . J 3 18I C 1 1460 1460 18I 18I . K 2 HEM D 1 1450 1450 HEM HEM . L 3 18I D 1 1460 1460 18I 18I . M 4 HOH A 1 2001 2001 HOH HOH . M 4 HOH A 2 2002 2002 HOH HOH . M 4 HOH A 3 2003 2003 HOH HOH . M 4 HOH A 4 2004 2004 HOH HOH . M 4 HOH A 5 2005 2005 HOH HOH . M 4 HOH A 6 2006 2006 HOH HOH . M 4 HOH A 7 2007 2007 HOH HOH . M 4 HOH A 8 2008 2008 HOH HOH . M 4 HOH A 9 2009 2009 HOH HOH . M 4 HOH A 10 2010 2010 HOH HOH . M 4 HOH A 11 2011 2011 HOH HOH . M 4 HOH A 12 2012 2012 HOH HOH . M 4 HOH A 13 2013 2013 HOH HOH . M 4 HOH A 14 2014 2014 HOH HOH . M 4 HOH A 15 2015 2015 HOH HOH . M 4 HOH A 16 2016 2016 HOH HOH . M 4 HOH A 17 2017 2017 HOH HOH . M 4 HOH A 18 2018 2018 HOH HOH . M 4 HOH A 19 2019 2019 HOH HOH . M 4 HOH A 20 2020 2020 HOH HOH . M 4 HOH A 21 2021 2021 HOH HOH . M 4 HOH A 22 2022 2022 HOH HOH . M 4 HOH A 23 2023 2023 HOH HOH . M 4 HOH A 24 2024 2024 HOH HOH . M 4 HOH A 25 2025 2025 HOH HOH . M 4 HOH A 26 2026 2026 HOH HOH . M 4 HOH A 27 2027 2027 HOH HOH . M 4 HOH A 28 2028 2028 HOH HOH . M 4 HOH A 29 2029 2029 HOH HOH . M 4 HOH A 30 2030 2030 HOH HOH . M 4 HOH A 31 2031 2031 HOH HOH . M 4 HOH A 32 2032 2032 HOH HOH . M 4 HOH A 33 2033 2033 HOH HOH . M 4 HOH A 34 2034 2034 HOH HOH . M 4 HOH A 35 2035 2035 HOH HOH . M 4 HOH A 36 2036 2036 HOH HOH . M 4 HOH A 37 2037 2037 HOH HOH . M 4 HOH A 38 2038 2038 HOH HOH . M 4 HOH A 39 2039 2039 HOH HOH . M 4 HOH A 40 2040 2040 HOH HOH . M 4 HOH A 41 2041 2041 HOH HOH . M 4 HOH A 42 2042 2042 HOH HOH . M 4 HOH A 43 2043 2043 HOH HOH . M 4 HOH A 44 2044 2044 HOH HOH . M 4 HOH A 45 2045 2045 HOH HOH . M 4 HOH A 46 2046 2046 HOH HOH . N 4 HOH B 1 2001 2001 HOH HOH . N 4 HOH B 2 2002 2002 HOH HOH . N 4 HOH B 3 2003 2003 HOH HOH . N 4 HOH B 4 2004 2004 HOH HOH . N 4 HOH B 5 2005 2005 HOH HOH . N 4 HOH B 6 2006 2006 HOH HOH . N 4 HOH B 7 2007 2007 HOH HOH . N 4 HOH B 8 2008 2008 HOH HOH . N 4 HOH B 9 2009 2009 HOH HOH . N 4 HOH B 10 2010 2010 HOH HOH . N 4 HOH B 11 2011 2011 HOH HOH . N 4 HOH B 12 2012 2012 HOH HOH . N 4 HOH B 13 2013 2013 HOH HOH . N 4 HOH B 14 2014 2014 HOH HOH . N 4 HOH B 15 2015 2015 HOH HOH . N 4 HOH B 16 2016 2016 HOH HOH . N 4 HOH B 17 2017 2017 HOH HOH . N 4 HOH B 18 2018 2018 HOH HOH . N 4 HOH B 19 2019 2019 HOH HOH . N 4 HOH B 20 2020 2020 HOH HOH . N 4 HOH B 21 2021 2021 HOH HOH . N 4 HOH B 22 2022 2022 HOH HOH . N 4 HOH B 23 2023 2023 HOH HOH . N 4 HOH B 24 2024 2024 HOH HOH . N 4 HOH B 25 2025 2025 HOH HOH . N 4 HOH B 26 2026 2026 HOH HOH . N 4 HOH B 27 2027 2027 HOH HOH . N 4 HOH B 28 2028 2028 HOH HOH . O 4 HOH C 1 2001 2001 HOH HOH . O 4 HOH C 2 2002 2002 HOH HOH . O 4 HOH C 3 2003 2003 HOH HOH . O 4 HOH C 4 2004 2004 HOH HOH . O 4 HOH C 5 2005 2005 HOH HOH . O 4 HOH C 6 2006 2006 HOH HOH . O 4 HOH C 7 2007 2007 HOH HOH . O 4 HOH C 8 2008 2008 HOH HOH . O 4 HOH C 9 2009 2009 HOH HOH . O 4 HOH C 10 2010 2010 HOH HOH . O 4 HOH C 11 2011 2011 HOH HOH . O 4 HOH C 12 2012 2012 HOH HOH . O 4 HOH C 13 2013 2013 HOH HOH . O 4 HOH C 14 2014 2014 HOH HOH . O 4 HOH C 15 2015 2015 HOH HOH . O 4 HOH C 16 2016 2016 HOH HOH . O 4 HOH C 17 2017 2017 HOH HOH . O 4 HOH C 18 2018 2018 HOH HOH . O 4 HOH C 19 2019 2019 HOH HOH . O 4 HOH C 20 2020 2020 HOH HOH . O 4 HOH C 21 2021 2021 HOH HOH . O 4 HOH C 22 2022 2022 HOH HOH . O 4 HOH C 23 2023 2023 HOH HOH . O 4 HOH C 24 2024 2024 HOH HOH . O 4 HOH C 25 2025 2025 HOH HOH . O 4 HOH C 26 2026 2026 HOH HOH . O 4 HOH C 27 2027 2027 HOH HOH . O 4 HOH C 28 2028 2028 HOH HOH . P 4 HOH D 1 2001 2001 HOH HOH . P 4 HOH D 2 2002 2002 HOH HOH . P 4 HOH D 3 2003 2003 HOH HOH . P 4 HOH D 4 2004 2004 HOH HOH . P 4 HOH D 5 2005 2005 HOH HOH . P 4 HOH D 6 2006 2006 HOH HOH . P 4 HOH D 7 2007 2007 HOH HOH . P 4 HOH D 8 2008 2008 HOH HOH . P 4 HOH D 9 2009 2009 HOH HOH . P 4 HOH D 10 2010 2010 HOH HOH . P 4 HOH D 11 2011 2011 HOH HOH . P 4 HOH D 12 2012 2012 HOH HOH . P 4 HOH D 13 2013 2013 HOH HOH . P 4 HOH D 14 2014 2014 HOH HOH . P 4 HOH D 15 2015 2015 HOH HOH . P 4 HOH D 16 2016 2016 HOH HOH . P 4 HOH D 17 2017 2017 HOH HOH . P 4 HOH D 18 2018 2018 HOH HOH . P 4 HOH D 19 2019 2019 HOH HOH . P 4 HOH D 20 2020 2020 HOH HOH . P 4 HOH D 21 2021 2021 HOH HOH . P 4 HOH D 22 2022 2022 HOH HOH . P 4 HOH D 23 2023 2023 HOH HOH . P 4 HOH D 24 2024 2024 HOH HOH . P 4 HOH D 25 2025 2025 HOH HOH . P 4 HOH D 26 2026 2026 HOH HOH . P 4 HOH D 27 2027 2027 HOH HOH . P 4 HOH D 28 2028 2028 HOH HOH . P 4 HOH D 29 2029 2029 HOH HOH . P 4 HOH D 30 2030 2030 HOH HOH . P 4 HOH D 31 2031 2031 HOH HOH . P 4 HOH D 32 2032 2032 HOH HOH . P 4 HOH D 33 2033 2033 HOH HOH . P 4 HOH D 34 2034 2034 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 18I . . . L 3 9.715 148.677 -48.111 1 77.97 ? C1 18I 1460 D 1 HETATM 2 N N1 18I . . . L 3 8.079 150.058 -49.152 1 74.4 ? N1 18I 1460 D 1 HETATM 3 C C2 18I . . . L 3 8.438 149.23 -48.163 1 77.82 ? C2 18I 1460 D 1 HETATM 4 N N2 18I . . . L 3 11.891 148.481 -49.139 1 92.07 ? N2 18I 1460 D 1 HETATM 5 O O2 18I . . . L 3 11.595 146.912 -47.565 1 87.55 ? O2 18I 1460 D 1 HETATM 6 C C3 18I . . . L 3 8.971 150.359 -50.114 1 80.64 ? C3 18I 1460 D 1 HETATM 7 N N3 18I . . . L 3 14.284 146.131 -47.885 1 81.39 ? N3 18I 1460 D 1 HETATM 8 C C4 18I . . . L 3 10.253 149.835 -50.115 1 73.56 ? C4 18I 1460 D 1 HETATM 9 N N4 18I . . . L 3 12.708 147.701 -52.963 1 99.77 ? N4 18I 1460 D 1 HETATM 10 C C5 18I . . . L 3 10.644 148.991 -49.092 1 81.71 ? C5 18I 1460 D 1 HETATM 11 C C6 18I . . . L 3 12.252 147.407 -48.448 1 86.95 ? C6 18I 1460 D 1 HETATM 12 C C7 18I . . . L 3 13.47 146.698 -48.933 1 85.37 ? C7 18I 1460 D 1 HETATM 13 C C21 18I . . . L 3 12.883 145.633 -49.858 1 89.15 ? C21 18I 1460 D 1 HETATM 14 C C22 18I . . . L 3 12.502 146.352 -51.13 1 91.52 ? C22 18I 1460 D 1 HETATM 15 C C23 18I . . . L 3 13.355 147.16 -51.886 1 100.32 ? C23 18I 1460 D 1 HETATM 16 C C24 18I . . . L 3 11.42 147.309 -52.989 1 96.81 ? C24 18I 1460 D 1 HETATM 17 C C25 18I . . . L 3 10.358 147.567 -53.845 1 91.18 ? C25 18I 1460 D 1 HETATM 18 C C26 18I . . . L 3 9.117 146.991 -53.58 1 86.98 ? C26 18I 1460 D 1 HETATM 19 C C27 18I . . . L 3 8.925 146.162 -52.468 1 88.1 ? C27 18I 1460 D 1 HETATM 20 C C28 18I . . . L 3 9.956 145.869 -51.574 1 87.83 ? C28 18I 1460 D 1 HETATM 21 C C29 18I . . . L 3 11.195 146.431 -51.817 1 91.34 ? C29 18I 1460 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 21 #