data_4BKP
#
_model_server_result.job_id            kFOxZZyD8eYC360ft2ggMw 
_model_server_result.datetime_utc      '2024-11-30 21:24:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4bkp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":901}' 
#
_entry.id    4BKP 
#
_exptl.entry_id    4BKP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4BKP 
_cell.length_a            106.596 
_cell.length_b            163.095 
_cell.length_c            197.581 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4BKP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,K,L 1 1 
C,D,H,I,J,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 263 n n 
PA O2A NAP sing 264 n n 
PA O5B NAP sing 265 n n 
PA O3 NAP sing 266 n n 
O2A HOA2 NAP sing 267 n n 
O5B C5B NAP sing 268 n n 
C5B C4B NAP sing 269 n n 
C5B H51A NAP sing 270 n n 
C5B H52A NAP sing 271 n n 
C4B O4B NAP sing 272 n n 
C4B C3B NAP sing 273 n n 
C4B H4B NAP sing 274 n n 
O4B C1B NAP sing 275 n n 
C3B O3B NAP sing 276 n n 
C3B C2B NAP sing 277 n n 
C3B H3B NAP sing 278 n n 
O3B HO3A NAP sing 279 n n 
C2B O2B NAP sing 280 n n 
C2B C1B NAP sing 281 n n 
C2B H2B NAP sing 282 n n 
O2B P2B NAP sing 283 n n 
C1B N9A NAP sing 284 n n 
C1B H1B NAP sing 285 n n 
N9A C8A NAP sing 286 n y 
N9A C4A NAP sing 287 n y 
C8A N7A NAP doub 288 n y 
C8A H8A NAP sing 289 n n 
N7A C5A NAP sing 290 n y 
C5A C6A NAP sing 291 n y 
C5A C4A NAP doub 292 n y 
C6A N6A NAP sing 293 n n 
C6A N1A NAP doub 294 n y 
N6A H61A NAP sing 295 n n 
N6A H62A NAP sing 296 n n 
N1A C2A NAP sing 297 n y 
C2A N3A NAP doub 298 n y 
C2A H2A NAP sing 299 n n 
N3A C4A NAP sing 300 n y 
O3 PN NAP sing 301 n n 
PN O1N NAP doub 302 n n 
PN O2N NAP sing 303 n n 
PN O5D NAP sing 304 n n 
O5D C5D NAP sing 305 n n 
C5D C4D NAP sing 306 n n 
C5D H51N NAP sing 307 n n 
C5D H52N NAP sing 308 n n 
C4D O4D NAP sing 309 n n 
C4D C3D NAP sing 310 n n 
C4D H4D NAP sing 311 n n 
O4D C1D NAP sing 312 n n 
C3D O3D NAP sing 313 n n 
C3D C2D NAP sing 314 n n 
C3D H3D NAP sing 315 n n 
O3D HO3N NAP sing 316 n n 
C2D O2D NAP sing 317 n n 
C2D C1D NAP sing 318 n n 
C2D H2D NAP sing 319 n n 
O2D HO2N NAP sing 320 n n 
C1D N1N NAP sing 321 n n 
C1D H1D NAP sing 322 n n 
N1N C2N NAP sing 323 n y 
N1N C6N NAP doub 324 n y 
C2N C3N NAP doub 325 n y 
C2N H2N NAP sing 326 n n 
C3N C7N NAP sing 327 n n 
C3N C4N NAP sing 328 n y 
C7N O7N NAP doub 329 n n 
C7N N7N NAP sing 330 n n 
N7N H71N NAP sing 331 n n 
N7N H72N NAP sing 332 n n 
C4N C5N NAP doub 333 n y 
C4N H4N NAP sing 334 n n 
C5N C6N NAP sing 335 n y 
C5N H5N NAP sing 336 n n 
C6N H6N NAP sing 337 n n 
P2B O1X NAP doub 338 n n 
P2B O2X NAP sing 339 n n 
P2B O3X NAP sing 340 n n 
O2X HOP2 NAP sing 341 n n 
O3X HOP3 NAP sing 342 n n 
#
_atom_sites.entry_id                     4BKP 
_atom_sites.fract_transf_matrix[1][1]    0.009381 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006131 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005061 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAP A 1 901 901 NAP NAP . 
F 3 FLC A 1 1321 1321 FLC FLC . 
G 2 NAP B 1 901 901 NAP NAP . 
H 2 NAP C 1 901 901 NAP NAP . 
I 2 NAP D 1 901 901 NAP NAP . 
J 4 EDO D 1 1321 1321 EDO EDO . 
K 5 HOH A 1 2001 2001 HOH HOH . 
K 5 HOH A 2 2002 2002 HOH HOH . 
K 5 HOH A 3 2003 2003 HOH HOH . 
K 5 HOH A 4 2004 2004 HOH HOH . 
K 5 HOH A 5 2005 2005 HOH HOH . 
K 5 HOH A 6 2006 2006 HOH HOH . 
K 5 HOH A 7 2007 2007 HOH HOH . 
K 5 HOH A 8 2008 2008 HOH HOH . 
K 5 HOH A 9 2009 2009 HOH HOH . 
K 5 HOH A 10 2010 2010 HOH HOH . 
K 5 HOH A 11 2011 2011 HOH HOH . 
K 5 HOH A 12 2012 2012 HOH HOH . 
K 5 HOH A 13 2013 2013 HOH HOH . 
K 5 HOH A 14 2014 2014 HOH HOH . 
K 5 HOH A 15 2015 2015 HOH HOH . 
K 5 HOH A 16 2016 2016 HOH HOH . 
K 5 HOH A 17 2017 2017 HOH HOH . 
L 5 HOH B 1 2001 2001 HOH HOH . 
L 5 HOH B 2 2002 2002 HOH HOH . 
L 5 HOH B 3 2003 2003 HOH HOH . 
L 5 HOH B 4 2004 2004 HOH HOH . 
L 5 HOH B 5 2005 2005 HOH HOH . 
L 5 HOH B 6 2006 2006 HOH HOH . 
M 5 HOH C 1 2001 2001 HOH HOH . 
M 5 HOH C 2 2002 2002 HOH HOH . 
M 5 HOH C 3 2003 2003 HOH HOH . 
M 5 HOH C 4 2004 2004 HOH HOH . 
M 5 HOH C 5 2005 2005 HOH HOH . 
M 5 HOH C 6 2006 2006 HOH HOH . 
M 5 HOH C 7 2007 2007 HOH HOH . 
M 5 HOH C 8 2008 2008 HOH HOH . 
M 5 HOH C 9 2009 2009 HOH HOH . 
M 5 HOH C 10 2010 2010 HOH HOH . 
M 5 HOH C 11 2011 2011 HOH HOH . 
M 5 HOH C 12 2012 2012 HOH HOH . 
M 5 HOH C 13 2013 2013 HOH HOH . 
M 5 HOH C 14 2014 2014 HOH HOH . 
M 5 HOH C 15 2015 2015 HOH HOH . 
M 5 HOH C 16 2016 2016 HOH HOH . 
N 5 HOH D 1 2001 2001 HOH HOH . 
N 5 HOH D 2 2002 2002 HOH HOH . 
N 5 HOH D 3 2003 2003 HOH HOH . 
N 5 HOH D 4 2004 2004 HOH HOH . 
N 5 HOH D 5 2005 2005 HOH HOH . 
N 5 HOH D 6 2006 2006 HOH HOH . 
N 5 HOH D 7 2007 2007 HOH HOH . 
N 5 HOH D 8 2008 2008 HOH HOH . 
N 5 HOH D 9 2009 2009 HOH HOH . 
N 5 HOH D 10 2010 2010 HOH HOH . 
N 5 HOH D 11 2011 2011 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . E 2 -10.335 -25.184 -62.811 1 50.26 ? PA NAP 901 A 1 
HETATM 2 O O1A NAP . . . E 2 -11.23 -25.637 -61.702 1 51.27 ? O1A NAP 901 A 1 
HETATM 3 O O2A NAP . . . E 2 -10.835 -25.088 -64.237 1 57.84 ? O2A NAP 901 A 1 
HETATM 4 O O5B NAP . . . E 2 -9.807 -23.726 -62.403 1 50.07 ? O5B NAP 901 A 1 
HETATM 5 C C5B NAP . . . E 2 -9.013 -22.993 -63.311 1 50.02 ? C5B NAP 901 A 1 
HETATM 6 C C4B NAP . . . E 2 -8.78 -21.629 -62.716 1 47.14 ? C4B NAP 901 A 1 
HETATM 7 O O4B NAP . . . E 2 -7.96 -20.896 -63.623 1 48.34 ? O4B NAP 901 A 1 
HETATM 8 C C3B NAP . . . E 2 -10.065 -20.844 -62.526 1 46.77 ? C3B NAP 901 A 1 
HETATM 9 O O3B NAP . . . E 2 -10.106 -20.274 -61.217 1 48.34 ? O3B NAP 901 A 1 
HETATM 10 C C2B NAP . . . E 2 -9.974 -19.766 -63.581 1 52.67 ? C2B NAP 901 A 1 
HETATM 11 O O2B NAP . . . E 2 -10.652 -18.555 -63.239 1 59 ? O2B NAP 901 A 1 
HETATM 12 C C1B NAP . . . E 2 -8.48 -19.58 -63.741 1 49.26 ? C1B NAP 901 A 1 
HETATM 13 N N9A NAP . . . E 2 -8.19 -18.979 -65.052 1 56.39 ? N9A NAP 901 A 1 
HETATM 14 C C8A NAP . . . E 2 -8.295 -19.574 -66.262 1 56.76 ? C8A NAP 901 A 1 
HETATM 15 N N7A NAP . . . E 2 -7.954 -18.702 -67.256 1 54.57 ? N7A NAP 901 A 1 
HETATM 16 C C5A NAP . . . E 2 -7.63 -17.533 -66.677 1 49.62 ? C5A NAP 901 A 1 
HETATM 17 C C6A NAP . . . E 2 -7.185 -16.199 -67.12 1 50.74 ? C6A NAP 901 A 1 
HETATM 18 N N6A NAP . . . E 2 -7.006 -15.923 -68.423 1 54.01 ? N6A NAP 901 A 1 
HETATM 19 N N1A NAP . . . E 2 -6.95 -15.258 -66.168 1 66.45 ? N1A NAP 901 A 1 
HETATM 20 C C2A NAP . . . E 2 -7.114 -15.514 -64.854 1 48.49 ? C2A NAP 901 A 1 
HETATM 21 N N3A NAP . . . E 2 -7.511 -16.712 -64.382 1 44.16 ? N3A NAP 901 A 1 
HETATM 22 C C4A NAP . . . E 2 -7.779 -17.73 -65.221 1 52.43 ? C4A NAP 901 A 1 
HETATM 23 O O3 NAP . . . E 2 -9.016 -26.077 -62.873 1 42.01 ? O3 NAP 901 A 1 
HETATM 24 P PN NAP . . . E 2 -8.288 -26.788 -61.645 1 51.9 ? PN NAP 901 A 1 
HETATM 25 O O1N NAP . . . E 2 -8.331 -28.299 -61.657 1 50.71 ? O1N NAP 901 A 1 
HETATM 26 O O2N NAP . . . E 2 -8.596 -26.017 -60.382 1 66.86 ? O2N NAP 901 A 1 
HETATM 27 O O5D NAP . . . E 2 -6.819 -26.524 -62.23 1 51 ? O5D NAP 901 A 1 
HETATM 28 C C5D NAP . . . E 2 -5.997 -25.441 -61.804 1 60.3 ? C5D NAP 901 A 1 
HETATM 29 C C4D NAP . . . E 2 -4.523 -25.832 -61.928 1 55.04 ? C4D NAP 901 A 1 
HETATM 30 O O4D NAP . . . E 2 -4.318 -27.181 -61.489 1 54.19 ? O4D NAP 901 A 1 
HETATM 31 C C3D NAP . . . E 2 -4.022 -25.752 -63.366 1 54.37 ? C3D NAP 901 A 1 
HETATM 32 O O3D NAP . . . E 2 -2.752 -25.095 -63.396 1 62.67 ? O3D NAP 901 A 1 
HETATM 33 C C2D NAP . . . E 2 -3.855 -27.184 -63.798 1 49.84 ? C2D NAP 901 A 1 
HETATM 34 O O2D NAP . . . E 2 -2.79 -27.281 -64.739 1 69.79 ? O2D NAP 901 A 1 
HETATM 35 C C1D NAP . . . E 2 -3.54 -27.877 -62.48 1 54.06 ? C1D NAP 901 A 1 
HETATM 36 N N1N NAP . . . E 2 -3.804 -29.328 -62.444 1 48.39 ? N1N NAP 901 A 1 
HETATM 37 C C2N NAP . . . E 2 -5.062 -29.798 -62.423 1 49.53 ? C2N NAP 901 A 1 
HETATM 38 C C3N NAP . . . E 2 -5.293 -31.175 -62.381 1 55.92 ? C3N NAP 901 A 1 
HETATM 39 C C7N NAP . . . E 2 -6.672 -31.739 -62.351 1 54.12 ? C7N NAP 901 A 1 
HETATM 40 O O7N NAP . . . E 2 -6.806 -32.911 -62.635 1 69.06 ? O7N NAP 901 A 1 
HETATM 41 N N7N NAP . . . E 2 -7.716 -30.987 -61.995 1 60.28 ? N7N NAP 901 A 1 
HETATM 42 C C4N NAP . . . E 2 -4.215 -32.057 -62.348 1 64.78 ? C4N NAP 901 A 1 
HETATM 43 C C5N NAP . . . E 2 -2.923 -31.543 -62.364 1 59.14 ? C5N NAP 901 A 1 
HETATM 44 C C6N NAP . . . E 2 -2.753 -30.165 -62.407 1 54.55 ? C6N NAP 901 A 1 
HETATM 45 P P2B NAP . . . E 2 -12.163 -18.389 -63.768 1 61.55 ? P2B NAP 901 A 1 
HETATM 46 O O1X NAP . . . E 2 -12.662 -17.054 -63.281 1 53 ? O1X NAP 901 A 1 
HETATM 47 O O2X NAP . . . E 2 -11.983 -18.433 -65.267 1 70.58 ? O2X NAP 901 A 1 
HETATM 48 O O3X NAP . . . E 2 -12.837 -19.589 -63.147 1 50.68 ? O3X NAP 901 A 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           48 
#